Wall clock time and date at job start Mon Mar 30 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00028 * 2 1 4 4 H 1.08002 * 120.00098 * 170.88100 * 3 2 1 5 5 C 1.38813 * 120.00373 * 350.88703 * 3 2 1 6 6 N 1.31621 * 119.99426 * 6.77026 * 5 3 2 7 7 Si 1.86798 * 120.00361 * 186.77852 * 5 3 2 8 8 H 1.48502 * 109.47399 * 89.99361 * 7 5 3 9 9 H 1.48490 * 109.47050 * 209.99581 * 7 5 3 10 10 H 1.48498 * 109.47025 * 329.99618 * 7 5 3 11 11 C 1.46504 * 119.99988 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46685 * 84.38237 * 11 2 1 13 13 H 1.09004 * 108.76546 * 306.17709 * 12 11 2 14 14 C 1.45863 * 108.79937 * 64.53788 * 12 11 2 15 15 C 1.54499 * 111.53840 * 182.24482 * 14 12 11 16 16 C 1.50521 * 108.82900 * 282.70796 * 15 14 12 17 17 C 1.54293 * 112.96728 * 92.24176 * 16 15 14 18 18 C 1.54070 * 112.29344 * 318.30081 * 17 16 15 19 19 N 1.44271 * 111.97638 * 318.91792 * 18 17 16 20 20 C 1.46902 * 111.00117 * 219.30895 * 19 18 17 21 21 H 1.08997 * 109.47420 * 184.40162 * 1 2 3 22 22 H 1.09001 * 109.46863 * 304.39961 * 1 2 3 23 23 H 1.08995 * 109.47528 * 64.39708 * 1 2 3 24 24 H 0.97007 * 119.99326 * 180.02562 * 6 5 3 25 25 H 1.08994 * 109.46994 * 324.38358 * 11 2 1 26 26 H 1.08997 * 109.46982 * 204.37900 * 11 2 1 27 27 H 1.08996 * 109.05633 * 302.75826 * 14 12 11 28 28 H 1.09001 * 109.04998 * 61.73338 * 14 12 11 29 29 H 1.09005 * 109.57746 * 42.58609 * 15 14 12 30 30 H 1.09002 * 109.57361 * 162.96474 * 15 14 12 31 31 H 1.08995 * 108.80526 * 331.34669 * 16 15 14 32 32 H 1.08998 * 108.70591 * 213.07249 * 16 15 14 33 33 H 1.08997 * 108.91964 * 197.57661 * 17 16 15 34 34 H 1.09002 * 108.91912 * 79.02694 * 17 16 15 35 35 H 1.08997 * 108.98345 * 198.27051 * 18 17 16 36 36 H 1.08999 * 108.97604 * 79.55362 * 18 17 16 37 37 H 1.09000 * 109.46780 * 290.93703 * 20 19 18 38 38 H 1.09007 * 109.46583 * 50.92541 * 20 19 18 39 39 H 1.08995 * 109.47549 * 170.92743 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2194 1.1918 0.1482 5 6 1.4688 2.3805 -0.1904 6 7 0.1535 2.3879 -0.2376 7 14 2.4193 3.9774 -0.3798 8 1 2.7198 4.2073 -1.8158 9 1 1.6039 5.1035 0.1417 10 1 3.6898 3.8908 0.3840 11 6 2.1975 -1.2688 0.0006 12 6 2.3301 -1.7816 -1.4348 13 1 1.3381 -1.8262 -1.8843 14 6 3.1488 -0.8439 -2.1952 15 6 3.2780 -1.2733 -3.6736 16 6 4.2755 -2.3966 -3.7678 17 6 3.6219 -3.7913 -3.6778 18 6 2.5202 -3.8523 -2.6025 19 7 2.8975 -3.1460 -1.4024 20 6 2.4559 -3.8714 -0.2038 21 1 -0.3634 -1.0246 0.0789 22 1 -0.3633 0.5806 0.8480 23 1 -0.3634 0.4441 -0.9267 24 1 -0.3223 3.2227 -0.3710 25 1 1.6557 -2.0008 0.5993 26 1 3.1897 -1.1152 0.4247 27 1 2.6921 0.1448 -2.1503 28 1 4.1426 -0.7970 -1.7499 29 1 2.3094 -1.6117 -4.0417 30 1 3.6228 -0.4288 -4.2704 31 1 4.9971 -2.2945 -2.9574 32 1 4.8029 -2.3170 -4.7184 33 1 4.3900 -4.5268 -3.4388 34 1 3.1857 -4.0403 -4.6452 35 1 2.3251 -4.8953 -2.3536 36 1 1.6089 -3.4085 -3.0033 37 1 1.3684 -3.8365 -0.1381 38 1 2.7829 -4.9094 -0.2663 39 1 2.8886 -3.4069 0.6822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:57 Heat of formation + Delta-G solvation = 34.279927 kcal Electronic energy + Delta-G solvation = -17093.096718 eV Core-core repulsion = 14650.732662 eV Total energy + Delta-G solvation = -2442.364055 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24603 -35.54600 -34.10540 -32.39920 -30.49631 -27.59570 -26.61411 -25.89165 -23.82762 -23.08819 -20.96244 -19.34001 -19.04796 -16.77803 -15.74792 -15.29497 -14.63134 -14.37863 -14.21417 -13.40729 -13.14281 -12.90171 -12.80316 -12.57145 -12.11495 -11.80825 -11.58340 -11.05041 -10.98596 -10.83816 -10.71705 -10.42166 -10.31319 -10.18719 -10.06767 -9.92697 -9.89210 -9.62696 -9.60669 -8.46087 -7.87108 -6.83230 -5.61040 -3.02457 3.41775 3.48034 3.49001 4.30527 4.56937 5.11624 5.18936 5.29317 5.47772 5.54341 5.61732 5.69159 5.71473 5.78856 5.84944 5.95082 6.06175 6.11602 6.14753 6.19610 6.28206 6.40954 6.48677 6.64625 6.68732 6.78539 6.79659 6.90535 7.00461 7.31541 7.55981 7.64407 7.69553 7.78243 7.97055 8.42558 9.31779 9.95013 10.38992 11.39066 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032523 B = 0.008606 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.719848 B = 3252.943532 C = 3756.143149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.610 5.610 3 C -0.239 4.239 4 H 0.074 0.926 5 C -0.006 4.006 6 N -0.918 5.918 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.149 3.851 12 C 0.066 3.934 13 H 0.034 0.966 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.105 4.105 18 C 0.056 3.944 19 N -0.532 5.532 20 C 0.027 3.973 21 H -0.014 1.014 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.249 0.751 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.023 0.977 38 H 0.055 0.945 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -11.155 -4.420 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.333 5.333 3 C -0.368 4.368 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.566 5.566 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.020 3.980 12 C -0.043 4.043 13 H 0.052 0.948 14 C -0.141 4.141 15 C -0.155 4.155 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.074 4.074 19 N -0.257 5.257 20 C -0.121 4.121 21 H 0.005 0.995 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.937 -10.954 -4.383 12.789 hybrid contribution -0.476 0.804 -0.281 0.976 sum 4.461 -10.150 -4.663 12.028 Atomic orbital electron populations 1.21003 0.81856 0.92636 1.01788 1.44060 1.02274 1.00602 1.86404 1.19292 0.91851 0.83888 1.41733 0.90815 1.24895 0.95676 0.97880 1.01725 1.70220 1.05186 1.24993 1.56185 0.86242 0.78871 0.83573 0.77903 1.21552 1.21863 1.20673 1.21178 0.96308 0.87969 0.92509 1.21401 0.95517 0.86910 1.00505 0.94764 1.20589 1.00443 1.00397 0.92684 1.21378 0.98781 0.97276 0.98061 1.21212 0.98641 0.94001 1.00548 1.21899 0.97927 0.97466 0.97084 1.21889 0.96628 0.97343 0.91528 1.61719 1.59620 1.03048 1.01271 1.22460 0.97997 0.97502 0.94134 0.99521 0.93933 0.94097 0.94036 0.94372 0.93015 0.88797 0.92546 0.92944 0.92755 0.91638 0.93834 0.92622 0.92968 0.92761 0.94556 0.95830 0.92585 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 9.00 59.85 0.54 4.89 16 2 N -0.61 -15.32 2.64 -181.13 -0.48 -15.80 16 3 C -0.24 -6.47 8.05 -15.06 -0.12 -6.59 16 4 H 0.07 1.96 7.77 -52.49 -0.41 1.55 16 5 C -0.01 -0.16 5.46 -17.43 -0.10 -0.26 16 6 N -0.92 -26.72 9.49 55.49 0.53 -26.19 16 7 Si 0.90 22.04 29.56 -169.99 -5.02 17.01 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.15 3.09 4.10 -4.04 -0.02 3.07 16 12 C 0.07 1.25 1.89 -70.59 -0.13 1.11 16 13 H 0.03 0.71 7.23 -51.93 -0.38 0.34 16 14 C -0.10 -1.98 4.47 -29.32 -0.13 -2.11 16 15 C -0.12 -1.91 5.60 -27.18 -0.15 -2.06 16 16 C -0.11 -1.51 5.42 -27.29 -0.15 -1.66 16 17 C -0.11 -1.36 6.14 -25.50 -0.16 -1.52 16 18 C 0.06 0.79 5.17 -4.67 -0.02 0.76 16 19 N -0.53 -8.48 4.44 -239.72 -1.07 -9.54 16 20 C 0.03 0.39 8.06 60.07 0.48 0.87 16 21 H -0.01 -0.31 7.84 -51.93 -0.41 -0.72 16 22 H 0.04 1.17 7.14 -51.93 -0.37 0.80 16 23 H 0.04 1.12 6.97 -51.93 -0.36 0.76 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.04 0.75 5.66 -51.93 -0.29 0.46 16 26 H 0.05 1.09 7.94 -51.93 -0.41 0.68 16 27 H 0.09 2.15 6.21 -51.93 -0.32 1.82 16 28 H 0.06 1.09 7.58 -51.93 -0.39 0.70 16 29 H 0.05 0.86 7.14 -51.93 -0.37 0.49 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.00 7.38 -51.93 -0.38 0.62 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.68 7.37 -51.93 -0.38 0.30 16 36 H 0.04 0.56 6.50 -51.93 -0.34 0.22 16 37 H 0.02 0.34 7.67 -51.93 -0.40 -0.06 16 38 H 0.06 0.67 7.80 -51.93 -0.40 0.27 16 39 H 0.07 1.04 6.76 -51.93 -0.35 0.68 16 LS Contribution 286.65 15.07 4.32 4.32 Total: -1.00 -28.32 286.65 -8.48 -36.79 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.80 Total: -3.11 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.49 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -1.02 Total: -51.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.32 -8.48 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.074 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds