Wall clock time and date at job start Mon Mar 30 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00028 * 2 1 4 4 H 1.08002 * 120.00098 * 170.88100 * 3 2 1 5 5 C 1.38813 * 120.00373 * 350.88703 * 3 2 1 6 6 N 1.31621 * 119.99426 * 6.77026 * 5 3 2 7 7 Si 1.86798 * 120.00361 * 186.77852 * 5 3 2 8 8 H 1.48502 * 109.47399 * 89.99361 * 7 5 3 9 9 H 1.48490 * 109.47050 * 209.99581 * 7 5 3 10 10 H 1.48498 * 109.47025 * 329.99618 * 7 5 3 11 11 C 1.46504 * 119.99988 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46685 * 84.38237 * 11 2 1 13 13 H 1.09004 * 108.76546 * 306.17709 * 12 11 2 14 14 C 1.45863 * 108.79937 * 64.53788 * 12 11 2 15 15 C 1.54499 * 111.53840 * 182.24482 * 14 12 11 16 16 C 1.50521 * 108.82900 * 282.70796 * 15 14 12 17 17 C 1.54293 * 112.96728 * 92.24176 * 16 15 14 18 18 C 1.54070 * 112.29344 * 318.30081 * 17 16 15 19 19 N 1.44271 * 111.97638 * 318.91792 * 18 17 16 20 20 C 1.46902 * 111.00117 * 219.30895 * 19 18 17 21 21 H 1.08997 * 109.47420 * 184.40162 * 1 2 3 22 22 H 1.09001 * 109.46863 * 304.39961 * 1 2 3 23 23 H 1.08995 * 109.47528 * 64.39708 * 1 2 3 24 24 H 0.97007 * 119.99326 * 180.02562 * 6 5 3 25 25 H 1.08994 * 109.46994 * 324.38358 * 11 2 1 26 26 H 1.08997 * 109.46982 * 204.37900 * 11 2 1 27 27 H 1.08996 * 109.05633 * 302.75826 * 14 12 11 28 28 H 1.09001 * 109.04998 * 61.73338 * 14 12 11 29 29 H 1.09005 * 109.57746 * 42.58609 * 15 14 12 30 30 H 1.09002 * 109.57361 * 162.96474 * 15 14 12 31 31 H 1.08995 * 108.80526 * 331.34669 * 16 15 14 32 32 H 1.08998 * 108.70591 * 213.07249 * 16 15 14 33 33 H 1.08997 * 108.91964 * 197.57661 * 17 16 15 34 34 H 1.09002 * 108.91912 * 79.02694 * 17 16 15 35 35 H 1.08997 * 108.98345 * 198.27051 * 18 17 16 36 36 H 1.08999 * 108.97604 * 79.55362 * 18 17 16 37 37 H 1.09000 * 109.46780 * 290.93703 * 20 19 18 38 38 H 1.09007 * 109.46583 * 50.92541 * 20 19 18 39 39 H 1.08995 * 109.47549 * 170.92743 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2194 1.1918 0.1482 5 6 1.4688 2.3805 -0.1904 6 7 0.1535 2.3879 -0.2376 7 14 2.4193 3.9774 -0.3798 8 1 2.7198 4.2073 -1.8158 9 1 1.6039 5.1035 0.1417 10 1 3.6898 3.8908 0.3840 11 6 2.1975 -1.2688 0.0006 12 6 2.3301 -1.7816 -1.4348 13 1 1.3381 -1.8262 -1.8843 14 6 3.1488 -0.8439 -2.1952 15 6 3.2780 -1.2733 -3.6736 16 6 4.2755 -2.3966 -3.7678 17 6 3.6219 -3.7913 -3.6778 18 6 2.5202 -3.8523 -2.6025 19 7 2.8975 -3.1460 -1.4024 20 6 2.4559 -3.8714 -0.2038 21 1 -0.3634 -1.0246 0.0789 22 1 -0.3633 0.5806 0.8480 23 1 -0.3634 0.4441 -0.9267 24 1 -0.3223 3.2227 -0.3710 25 1 1.6557 -2.0008 0.5993 26 1 3.1897 -1.1152 0.4247 27 1 2.6921 0.1448 -2.1503 28 1 4.1426 -0.7970 -1.7499 29 1 2.3094 -1.6117 -4.0417 30 1 3.6228 -0.4288 -4.2704 31 1 4.9971 -2.2945 -2.9574 32 1 4.8029 -2.3170 -4.7184 33 1 4.3900 -4.5268 -3.4388 34 1 3.1857 -4.0403 -4.6452 35 1 2.3251 -4.8953 -2.3536 36 1 1.6089 -3.4085 -3.0033 37 1 1.3684 -3.8365 -0.1381 38 1 2.7829 -4.9094 -0.2663 39 1 2.8886 -3.4069 0.6822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:57 Heat of formation + Delta-G solvation = 17.386401 kcal Electronic energy + Delta-G solvation = -17093.829276 eV Core-core repulsion = 14650.732662 eV Total energy + Delta-G solvation = -2443.096614 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64241 -37.37347 -35.38536 -34.04714 -32.32365 -28.85983 -28.21052 -27.97597 -25.10437 -24.67068 -22.71794 -20.77680 -20.33516 -18.82073 -17.28196 -16.85506 -16.20084 -15.90504 -15.48786 -15.17034 -14.65459 -14.44857 -14.35979 -14.02613 -13.53567 -13.35397 -13.03516 -12.89754 -12.70267 -12.55416 -12.19799 -12.09693 -11.97159 -11.92986 -11.58730 -11.56514 -11.37219 -11.18660 -11.01375 -10.57354 -9.18479 -8.87238 -7.73969 -5.16595 1.46327 1.47802 1.55713 2.51053 3.01596 3.36820 3.80669 3.87692 4.04224 4.16155 4.27771 4.39774 4.40148 4.51571 4.54166 4.60637 4.77761 4.80113 4.84153 4.88935 4.98713 5.04361 5.08576 5.09951 5.29493 5.37424 5.45867 5.51358 5.51878 5.57787 5.62495 5.72907 5.83214 6.20402 6.34301 6.39323 7.19057 7.91097 8.30595 9.25273 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032523 B = 0.008606 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.719848 B = 3252.943532 C = 3756.143149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.623 5.623 3 C -0.237 4.237 4 H 0.076 0.924 5 C -0.062 4.062 6 N -0.947 5.947 7 Si 0.965 3.035 8 H -0.288 1.288 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.149 3.851 12 C 0.083 3.917 13 H 0.012 0.988 14 C -0.097 4.097 15 C -0.111 4.111 16 C -0.103 4.103 17 C -0.102 4.102 18 C 0.051 3.949 19 N -0.532 5.532 20 C 0.024 3.976 21 H 0.014 0.986 22 H 0.015 0.985 23 H 0.013 0.987 24 H 0.243 0.757 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.022 0.978 37 H 0.019 0.981 38 H 0.085 0.915 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -12.950 -5.041 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.348 5.348 3 C -0.367 4.367 4 H 0.094 0.906 5 C -0.255 4.255 6 N -0.597 5.597 7 Si 0.794 3.206 8 H -0.215 1.215 9 H -0.224 1.224 10 H -0.194 1.194 11 C 0.022 3.978 12 C -0.027 4.027 13 H 0.030 0.970 14 C -0.135 4.135 15 C -0.149 4.149 16 C -0.141 4.141 17 C -0.140 4.140 18 C -0.078 4.078 19 N -0.256 5.256 20 C -0.123 4.123 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.103 0.897 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.403 -12.791 -5.003 15.153 hybrid contribution -0.902 1.266 -0.065 1.556 sum 5.501 -11.525 -5.068 13.739 Atomic orbital electron populations 1.20641 0.82315 0.93402 0.99160 1.44255 1.02312 1.01688 1.86508 1.19533 0.91988 0.84781 1.40385 0.90639 1.25618 0.96532 1.00898 1.02435 1.70411 1.06420 1.25148 1.57711 0.85278 0.77933 0.79757 0.77675 1.21494 1.22351 1.19450 1.21312 0.95755 0.86565 0.94131 1.21015 0.94485 0.88867 0.98329 0.96970 1.20444 0.99576 0.98439 0.95078 1.21320 0.99463 0.98413 0.95701 1.21159 0.97807 0.93899 1.01239 1.21901 0.97870 0.96807 0.97457 1.22005 0.96613 0.98188 0.90993 1.61717 1.59255 1.01789 1.02857 1.22544 0.97766 0.98873 0.93150 0.96777 0.96622 0.96875 0.94735 0.92849 0.93311 0.93075 0.92955 0.93304 0.92557 0.92661 0.91839 0.91070 0.91283 0.90413 0.95958 0.96245 0.89670 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.84 9.00 127.77 1.15 10.99 16 2 N -0.62 -31.76 2.64 -726.96 -1.92 -33.68 16 3 C -0.24 -13.04 8.05 84.03 0.68 -12.37 16 4 H 0.08 4.04 7.77 -2.91 -0.02 4.02 16 5 C -0.06 -3.53 5.46 84.86 0.46 -3.06 16 6 N -0.95 -56.76 9.49 21.65 0.21 -56.55 16 7 Si 0.96 46.01 29.56 68.60 2.03 48.03 16 8 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 C 0.15 6.13 4.10 86.38 0.35 6.48 16 12 C 0.08 3.08 1.89 42.55 0.08 3.16 16 13 H 0.01 0.51 7.23 -2.39 -0.02 0.50 16 14 C -0.10 -3.73 4.47 28.92 0.13 -3.61 16 15 C -0.11 -3.51 5.60 30.30 0.17 -3.34 16 16 C -0.10 -2.67 5.42 30.23 0.16 -2.50 16 17 C -0.10 -2.28 6.14 31.39 0.19 -2.09 16 18 C 0.05 1.30 5.17 87.16 0.45 1.75 16 19 N -0.53 -15.78 4.44 -912.35 -4.05 -19.83 16 20 C 0.02 0.63 8.06 127.69 1.03 1.66 16 21 H 0.01 0.63 7.84 -2.39 -0.02 0.61 16 22 H 0.02 0.87 7.14 -2.39 -0.02 0.85 16 23 H 0.01 0.73 6.97 -2.39 -0.02 0.72 16 24 H 0.24 14.25 8.31 -92.70 -0.77 13.47 16 25 H 0.05 2.03 5.66 -2.39 -0.01 2.02 16 26 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 27 H 0.05 2.40 6.21 -2.39 -0.01 2.38 16 28 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 29 H 0.05 1.56 7.14 -2.38 -0.02 1.55 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.55 7.38 -2.39 -0.02 1.53 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.64 7.37 -2.39 -0.02 1.62 16 36 H 0.02 0.64 6.50 -2.39 -0.02 0.62 16 37 H 0.02 0.51 7.67 -2.39 -0.02 0.49 16 38 H 0.08 1.72 7.80 -2.38 -0.02 1.70 16 39 H 0.07 1.81 6.76 -2.39 -0.02 1.79 16 Total: -1.00 -61.36 286.65 2.12 -59.25 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.99 Total: 5.71 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.86 Total: -2.93 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -5.76 Total: -110.06 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -61.36 2.12 -59.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.636 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds