Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99736 * 2 1 4 4 H 1.07991 * 119.99604 * 187.07511 * 3 2 1 5 5 C 1.38814 * 119.99884 * 7.07857 * 3 2 1 6 6 N 1.31612 * 120.00274 * 7.18784 * 5 3 2 7 7 Si 1.86798 * 119.99587 * 187.18923 * 5 3 2 8 8 H 1.48497 * 109.47536 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47109 * 120.00321 * 7 5 3 10 10 H 1.48504 * 109.46725 * 239.99832 * 7 5 3 11 11 C 1.46496 * 119.99962 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47476 * 276.37365 * 11 2 1 13 13 H 1.09012 * 109.68780 * 56.94508 * 12 11 2 14 14 C 1.53974 * 109.70017 * 296.39474 * 12 11 2 15 15 C 1.45869 * 112.67298 * 158.88741 * 14 12 11 16 16 C 1.54523 * 111.67463 * 61.49401 * 15 14 12 17 17 C 1.50529 * 108.96340 * 282.71125 * 16 15 14 18 18 C 1.54048 * 112.86614 * 91.60926 * 17 16 15 19 19 N 1.44296 * 109.69704 * 177.53126 * 12 11 2 20 20 C 1.46897 * 111.00394 * 341.05478 * 19 12 11 21 21 H 1.08999 * 109.47277 * 174.86188 * 1 2 3 22 22 H 1.09005 * 109.47301 * 294.85983 * 1 2 3 23 23 H 1.09006 * 109.47604 * 54.86140 * 1 2 3 24 24 H 0.97001 * 120.00120 * 180.02562 * 6 5 3 25 25 H 1.09003 * 109.47023 * 156.37207 * 11 2 1 26 26 H 1.09002 * 109.47088 * 36.38071 * 11 2 1 27 27 H 1.09004 * 108.84354 * 38.05904 * 14 12 11 28 28 H 1.09004 * 108.83960 * 279.71213 * 14 12 11 29 29 H 1.08999 * 109.04126 * 300.92628 * 15 14 12 30 30 H 1.09005 * 108.98231 * 182.02193 * 15 14 12 31 31 H 1.09005 * 109.56671 * 42.58392 * 16 15 14 32 32 H 1.09001 * 109.57500 * 162.83068 * 16 15 14 33 33 H 1.08997 * 108.79144 * 212.70034 * 17 16 15 34 34 H 1.09002 * 108.79392 * 330.91797 * 17 16 15 35 35 H 1.09007 * 108.72382 * 196.87710 * 18 17 16 36 36 H 1.09008 * 108.61537 * 78.91808 * 18 17 16 37 37 H 1.09005 * 109.46946 * 64.72413 * 20 19 12 38 38 H 1.08994 * 109.47702 * 184.72229 * 20 19 12 39 39 H 1.08993 * 109.47244 * 304.73122 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2234 1.1895 -0.1152 5 6 1.4634 2.3835 0.1481 6 7 0.1778 2.3749 0.4296 7 14 2.3649 4.0073 -0.0520 8 1 3.7930 3.7457 -0.3635 9 1 1.7498 4.7816 -1.1598 10 1 2.2684 4.7857 1.2090 11 6 2.1975 -1.2687 0.0006 12 6 2.3138 -1.7899 1.4343 13 1 1.3195 -1.8957 1.8685 14 6 3.1465 -0.8070 2.2779 15 6 2.9047 -0.9499 3.7093 16 6 3.2910 -2.3578 4.2156 17 6 2.2122 -3.3316 3.8237 18 6 2.4775 -4.0031 2.4628 19 7 2.9838 -3.0679 1.4344 20 6 2.9465 -3.6819 0.1004 21 1 -0.3634 -1.0235 -0.0920 22 1 -0.3634 0.4320 0.9325 23 1 -0.3634 0.5915 -0.8404 24 1 -0.3018 3.2117 0.5327 25 1 3.1945 -1.1128 -0.4114 26 1 1.6626 -1.9973 -0.6087 27 1 2.8984 0.2114 1.9788 28 1 4.2041 -0.9819 2.0802 29 1 1.8474 -0.7774 3.9103 30 1 3.4942 -0.2054 4.2445 31 1 4.2370 -2.6604 3.7664 32 1 3.3910 -2.3409 5.3009 33 1 2.1392 -4.1023 4.5910 34 1 1.2618 -2.8005 3.7712 35 1 1.5486 -4.4472 2.1047 36 1 3.2102 -4.7978 2.6039 37 1 3.5155 -3.0682 -0.5981 38 1 3.3837 -4.6793 0.1471 39 1 1.9129 -3.7537 -0.2378 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = 32.857876 kcal Electronic energy + Delta-G solvation = -17151.318191 eV Core-core repulsion = 14708.892471 eV Total energy + Delta-G solvation = -2442.425720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.11333 -35.49280 -34.31994 -32.22659 -30.56277 -27.39324 -26.67253 -25.91380 -24.03964 -22.87215 -20.78060 -19.84433 -18.50488 -16.76001 -15.70837 -15.46782 -14.68926 -14.47360 -13.92849 -13.34476 -13.24944 -13.02246 -12.60887 -12.48504 -12.28466 -11.67678 -11.56716 -11.11116 -11.06324 -10.80595 -10.65542 -10.39911 -10.35542 -10.16749 -10.01779 -9.95788 -9.84598 -9.65629 -9.53273 -8.49007 -7.68592 -6.81003 -5.57859 -3.01789 3.41625 3.48527 3.50273 4.30780 4.57417 5.03399 5.20902 5.37082 5.48447 5.54194 5.61638 5.69643 5.76595 5.81038 5.87330 5.95034 6.05856 6.13303 6.20891 6.26366 6.30458 6.32388 6.48716 6.63570 6.77729 6.80457 6.86560 6.96039 7.03647 7.41051 7.56495 7.62224 7.77562 7.85554 7.97862 8.43537 9.32391 9.96040 10.39504 11.40763 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032550 B = 0.008592 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.004299 B = 3257.940907 C = 3584.063025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.607 5.607 3 C -0.236 4.236 4 H 0.075 0.925 5 C -0.008 4.008 6 N -0.917 5.917 7 Si 0.904 3.096 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.149 3.851 12 C 0.074 3.926 13 H 0.039 0.961 14 C -0.111 4.111 15 C -0.108 4.108 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.066 3.934 19 N -0.548 5.548 20 C 0.029 3.971 21 H -0.013 1.013 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.248 0.752 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -10.935 4.052 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.331 5.331 3 C -0.365 4.365 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.566 5.566 7 Si 0.735 3.265 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.021 3.979 12 C -0.037 4.037 13 H 0.057 0.943 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.062 4.062 19 N -0.273 5.273 20 C -0.119 4.119 21 H 0.006 0.994 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.427 -10.679 4.167 12.288 hybrid contribution -0.511 0.713 -0.163 0.892 sum 3.917 -9.966 4.004 11.432 Atomic orbital electron populations 1.21002 0.81976 0.92723 1.01891 1.44071 1.02231 1.00585 1.86173 1.19318 0.91564 0.83617 1.42025 0.90759 1.24851 0.96053 0.97780 1.01715 1.70177 1.07346 1.24539 1.54509 0.86153 0.78784 0.84248 0.77275 1.20473 1.21838 1.21894 1.21191 0.96182 0.87989 0.92575 1.22158 0.94761 0.87113 0.99680 0.94253 1.20502 0.99296 1.01732 0.93399 1.20541 1.00772 0.95559 0.97697 1.21314 0.99136 0.95479 0.98899 1.21373 0.99758 0.98778 0.95634 1.22331 0.97434 0.94574 0.91833 1.60929 1.58424 1.03915 1.04060 1.22367 0.99605 0.98822 0.91135 0.99393 0.92964 0.95042 0.94115 0.92889 0.94586 0.88631 0.93012 0.92959 0.93121 0.91286 0.93236 0.92313 0.92368 0.95828 0.91960 0.90938 0.92842 0.95748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.28 9.00 59.85 0.54 4.82 16 2 N -0.61 -15.27 2.71 -181.12 -0.49 -15.76 16 3 C -0.24 -6.39 7.75 -15.06 -0.12 -6.51 16 4 H 0.07 1.98 7.77 -52.49 -0.41 1.57 16 5 C -0.01 -0.22 5.39 -17.43 -0.09 -0.32 16 6 N -0.92 -26.70 9.62 55.49 0.53 -26.16 16 7 Si 0.90 22.08 29.56 -169.99 -5.02 17.06 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 C 0.15 3.10 3.84 -4.05 -0.02 3.08 16 12 C 0.07 1.40 2.22 -68.60 -0.15 1.25 16 13 H 0.04 0.82 6.80 -51.92 -0.35 0.47 16 14 C -0.11 -2.16 4.78 -29.60 -0.14 -2.31 16 15 C -0.11 -1.85 5.35 -29.31 -0.16 -2.01 16 16 C -0.11 -1.59 5.62 -27.17 -0.15 -1.74 16 17 C -0.12 -1.62 5.29 -27.42 -0.15 -1.76 16 18 C 0.07 0.93 5.38 -2.70 -0.01 0.92 16 19 N -0.55 -8.85 4.25 -234.70 -1.00 -9.85 16 20 C 0.03 0.41 8.27 60.06 0.50 0.91 16 21 H -0.01 -0.29 7.85 -51.93 -0.41 -0.70 16 22 H 0.05 1.45 6.74 -51.93 -0.35 1.10 16 23 H 0.03 0.86 7.41 -51.93 -0.38 0.47 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.05 1.11 7.27 -51.93 -0.38 0.73 16 26 H 0.04 0.71 6.00 -51.93 -0.31 0.40 16 27 H 0.10 2.22 5.52 -51.93 -0.29 1.93 16 28 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.05 0.95 7.59 -51.93 -0.39 0.56 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.02 7.79 -51.93 -0.40 0.62 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.88 6.67 -51.93 -0.35 0.54 16 35 H 0.02 0.33 8.02 -51.92 -0.42 -0.09 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 38 H 0.05 0.65 8.05 -51.93 -0.42 0.24 16 39 H 0.02 0.36 6.98 -51.93 -0.36 -0.01 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -28.40 286.48 -8.43 -36.83 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.81 Total: -2.77 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.05 Total: -3.67 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.95 Total: -51.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.40 -8.43 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.689 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds