Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99736 * 2 1 4 4 H 1.07991 * 119.99604 * 187.07511 * 3 2 1 5 5 C 1.38814 * 119.99884 * 7.07857 * 3 2 1 6 6 N 1.31612 * 120.00274 * 7.18784 * 5 3 2 7 7 Si 1.86798 * 119.99587 * 187.18923 * 5 3 2 8 8 H 1.48497 * 109.47536 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47109 * 120.00321 * 7 5 3 10 10 H 1.48504 * 109.46725 * 239.99832 * 7 5 3 11 11 C 1.46496 * 119.99962 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47476 * 276.37365 * 11 2 1 13 13 H 1.09012 * 109.68780 * 56.94508 * 12 11 2 14 14 C 1.53974 * 109.70017 * 296.39474 * 12 11 2 15 15 C 1.45869 * 112.67298 * 158.88741 * 14 12 11 16 16 C 1.54523 * 111.67463 * 61.49401 * 15 14 12 17 17 C 1.50529 * 108.96340 * 282.71125 * 16 15 14 18 18 C 1.54048 * 112.86614 * 91.60926 * 17 16 15 19 19 N 1.44296 * 109.69704 * 177.53126 * 12 11 2 20 20 C 1.46897 * 111.00394 * 341.05478 * 19 12 11 21 21 H 1.08999 * 109.47277 * 174.86188 * 1 2 3 22 22 H 1.09005 * 109.47301 * 294.85983 * 1 2 3 23 23 H 1.09006 * 109.47604 * 54.86140 * 1 2 3 24 24 H 0.97001 * 120.00120 * 180.02562 * 6 5 3 25 25 H 1.09003 * 109.47023 * 156.37207 * 11 2 1 26 26 H 1.09002 * 109.47088 * 36.38071 * 11 2 1 27 27 H 1.09004 * 108.84354 * 38.05904 * 14 12 11 28 28 H 1.09004 * 108.83960 * 279.71213 * 14 12 11 29 29 H 1.08999 * 109.04126 * 300.92628 * 15 14 12 30 30 H 1.09005 * 108.98231 * 182.02193 * 15 14 12 31 31 H 1.09005 * 109.56671 * 42.58392 * 16 15 14 32 32 H 1.09001 * 109.57500 * 162.83068 * 16 15 14 33 33 H 1.08997 * 108.79144 * 212.70034 * 17 16 15 34 34 H 1.09002 * 108.79392 * 330.91797 * 17 16 15 35 35 H 1.09007 * 108.72382 * 196.87710 * 18 17 16 36 36 H 1.09008 * 108.61537 * 78.91808 * 18 17 16 37 37 H 1.09005 * 109.46946 * 64.72413 * 20 19 12 38 38 H 1.08994 * 109.47702 * 184.72229 * 20 19 12 39 39 H 1.08993 * 109.47244 * 304.73122 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2234 1.1895 -0.1152 5 6 1.4634 2.3835 0.1481 6 7 0.1778 2.3749 0.4296 7 14 2.3649 4.0073 -0.0520 8 1 3.7930 3.7457 -0.3635 9 1 1.7498 4.7816 -1.1598 10 1 2.2684 4.7857 1.2090 11 6 2.1975 -1.2687 0.0006 12 6 2.3138 -1.7899 1.4343 13 1 1.3195 -1.8957 1.8685 14 6 3.1465 -0.8070 2.2779 15 6 2.9047 -0.9499 3.7093 16 6 3.2910 -2.3578 4.2156 17 6 2.2122 -3.3316 3.8237 18 6 2.4775 -4.0031 2.4628 19 7 2.9838 -3.0679 1.4344 20 6 2.9465 -3.6819 0.1004 21 1 -0.3634 -1.0235 -0.0920 22 1 -0.3634 0.4320 0.9325 23 1 -0.3634 0.5915 -0.8404 24 1 -0.3018 3.2117 0.5327 25 1 3.1945 -1.1128 -0.4114 26 1 1.6626 -1.9973 -0.6087 27 1 2.8984 0.2114 1.9788 28 1 4.2041 -0.9819 2.0802 29 1 1.8474 -0.7774 3.9103 30 1 3.4942 -0.2054 4.2445 31 1 4.2370 -2.6604 3.7664 32 1 3.3910 -2.3409 5.3009 33 1 2.1392 -4.1023 4.5910 34 1 1.2618 -2.8005 3.7712 35 1 1.5486 -4.4472 2.1047 36 1 3.2102 -4.7978 2.6039 37 1 3.5155 -3.0682 -0.5981 38 1 3.3837 -4.6793 0.1471 39 1 1.9129 -3.7537 -0.2378 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = 15.995911 kcal Electronic energy + Delta-G solvation = -17152.049380 eV Core-core repulsion = 14708.892471 eV Total energy + Delta-G solvation = -2443.156910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51735 -37.32593 -35.66077 -33.85663 -32.37292 -28.78499 -28.18254 -28.00763 -25.40926 -24.42113 -22.55116 -21.16738 -19.94223 -18.79751 -17.32799 -16.84417 -16.32036 -15.99844 -15.40615 -15.03011 -14.72183 -14.53989 -14.29945 -13.96452 -13.58249 -13.37808 -13.08803 -12.89427 -12.73917 -12.37432 -12.31142 -12.11123 -11.92630 -11.85017 -11.66663 -11.52604 -11.45618 -11.15934 -11.06928 -10.58636 -9.08640 -8.78648 -7.70418 -5.15741 1.46521 1.47542 1.57303 2.52163 3.05287 3.38184 3.78854 3.86621 4.01927 4.10596 4.25126 4.34102 4.42705 4.54218 4.57219 4.65490 4.72607 4.77994 4.79263 4.92335 5.02383 5.05902 5.11715 5.13401 5.18280 5.42828 5.43716 5.47838 5.54226 5.60208 5.63696 5.75856 5.83872 6.28760 6.34537 6.46315 7.19845 7.92091 8.31179 9.27348 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032550 B = 0.008592 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.004299 B = 3257.940907 C = 3584.063025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.621 5.621 3 C -0.233 4.233 4 H 0.077 0.923 5 C -0.065 4.065 6 N -0.947 5.947 7 Si 0.965 3.035 8 H -0.266 1.266 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.149 3.851 12 C 0.091 3.909 13 H 0.018 0.982 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.101 4.101 17 C -0.118 4.118 18 C 0.063 3.937 19 N -0.552 5.552 20 C 0.027 3.973 21 H 0.014 0.986 22 H 0.024 0.976 23 H 0.005 0.995 24 H 0.242 0.758 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -12.777 4.531 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.345 5.345 3 C -0.363 4.363 4 H 0.095 0.905 5 C -0.258 4.258 6 N -0.597 5.597 7 Si 0.795 3.205 8 H -0.191 1.191 9 H -0.222 1.222 10 H -0.223 1.223 11 C 0.023 3.977 12 C -0.021 4.021 13 H 0.036 0.964 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.138 4.138 17 C -0.156 4.156 18 C -0.064 4.064 19 N -0.278 5.278 20 C -0.120 4.120 21 H 0.033 0.967 22 H 0.042 0.958 23 H 0.024 0.976 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.913 -12.564 4.642 14.641 hybrid contribution -0.931 1.187 -0.317 1.541 sum 4.982 -11.377 4.326 13.152 Atomic orbital electron populations 1.20645 0.82466 0.93445 0.99295 1.44274 1.02258 1.01706 1.86222 1.19555 0.91733 0.84480 1.40494 0.90544 1.25580 0.96874 1.00819 1.02482 1.70370 1.08605 1.24664 1.56093 0.85193 0.78320 0.80397 0.76607 1.19087 1.22152 1.22292 1.21332 0.95762 0.86540 0.94101 1.21729 0.93844 0.88838 0.97641 0.96394 1.20374 0.99333 0.99414 0.95000 1.20516 0.99709 0.98105 0.96344 1.21232 0.99175 0.93248 1.00150 1.21399 0.98380 0.99285 0.96500 1.22458 0.98303 0.94468 0.91177 1.60911 1.57840 1.03345 1.05655 1.22420 0.99552 1.00089 0.89967 0.96735 0.95802 0.97611 0.94810 0.92879 0.93169 0.92923 0.92736 0.94834 0.92751 0.91153 0.91071 0.89332 0.94411 0.95556 0.89482 0.91402 0.90017 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.68 9.00 127.77 1.15 10.83 16 2 N -0.62 -31.59 2.71 -726.93 -1.97 -33.56 16 3 C -0.23 -12.77 7.75 84.03 0.65 -12.12 16 4 H 0.08 4.09 7.77 -2.92 -0.02 4.06 16 5 C -0.06 -3.68 5.39 84.86 0.46 -3.22 16 6 N -0.95 -56.81 9.62 21.65 0.21 -56.60 16 7 Si 0.97 46.10 29.56 68.60 2.03 48.12 16 8 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 9 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 11 C 0.15 6.13 3.84 86.38 0.33 6.46 16 12 C 0.09 3.38 2.22 45.73 0.10 3.48 16 13 H 0.02 0.75 6.80 -2.38 -0.02 0.73 16 14 C -0.10 -3.99 4.78 28.74 0.14 -3.86 16 15 C -0.11 -3.68 5.35 28.93 0.15 -3.53 16 16 C -0.10 -2.63 5.62 30.31 0.17 -2.46 16 17 C -0.12 -2.92 5.29 30.15 0.16 -2.76 16 18 C 0.06 1.57 5.38 86.46 0.47 2.04 16 19 N -0.55 -16.52 4.25 -896.46 -3.81 -20.33 16 20 C 0.03 0.71 8.27 127.69 1.06 1.77 16 21 H 0.01 0.65 7.85 -2.39 -0.02 0.63 16 22 H 0.02 1.36 6.74 -2.38 -0.02 1.35 16 23 H 0.01 0.30 7.41 -2.38 -0.02 0.28 16 24 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.05 2.18 7.27 -2.39 -0.02 2.16 16 26 H 0.05 1.92 6.00 -2.39 -0.01 1.91 16 27 H 0.05 2.50 5.52 -2.39 -0.01 2.48 16 28 H 0.05 2.04 8.08 -2.38 -0.02 2.02 16 29 H 0.03 1.24 7.59 -2.39 -0.02 1.22 16 30 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.07 1.86 7.79 -2.38 -0.02 1.84 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.09 6.67 -2.39 -0.02 1.08 16 35 H 0.03 0.65 8.02 -2.38 -0.02 0.63 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.82 6.68 -2.38 -0.02 1.80 16 38 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 39 H 0.02 0.54 6.98 -2.39 -0.02 0.53 16 Total: -1.00 -61.64 286.48 2.29 -59.36 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.99 Total: 6.38 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.84 Total: -3.37 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -5.57 Total: -110.49 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -61.64 2.29 -59.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.354 kcal (2) G-P(sol) polarization free energy of solvation -61.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds