Wall clock time and date at job start Mon Mar 30 2020 03:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00407 * 2 1 4 4 H 1.48504 * 109.46789 * 240.00239 * 3 2 1 5 5 H 1.48506 * 109.46595 * 359.97438 * 3 2 1 6 6 H 1.48486 * 109.47462 * 119.99623 * 3 2 1 7 7 C 1.37885 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99447 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00164 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46868 * 299.99300 * 9 7 2 11 11 O 1.42896 * 109.47230 * 59.99532 * 9 7 2 12 12 N 1.46300 * 113.99784 * 204.99754 * 11 9 7 13 13 C 1.50696 * 109.46736 * 179.97438 * 9 7 2 14 14 C 1.38247 * 119.98658 * 100.00167 * 13 9 7 15 15 C 1.38216 * 120.01497 * 179.97438 * 14 13 9 16 16 C 1.38357 * 119.98603 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.01134 * 180.02562 * 16 15 14 18 18 C 1.38347 * 119.97107 * 0.28224 * 16 15 14 19 19 C 1.38219 * 119.98930 * 359.40143 * 18 16 15 20 20 H 0.97004 * 120.00189 * 0.02562 * 1 2 3 21 21 H 1.00898 * 110.99742 * 56.04789 * 12 11 9 22 22 H 1.00908 * 110.99671 * 180.02562 * 12 11 9 23 23 H 1.08003 * 119.99321 * 359.97438 * 14 13 9 24 24 H 1.08002 * 120.00776 * 180.02562 * 15 14 13 25 25 H 1.08000 * 120.00661 * 179.71600 * 18 16 15 26 26 H 1.07997 * 119.99445 * 180.32231 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4297 -2.5751 -1.1664 12 7 -0.7322 -3.4520 -1.0204 13 6 2.2302 -3.6446 0.0005 14 6 2.5211 -4.3049 1.1797 15 6 3.4188 -5.3559 1.1803 16 6 4.0267 -5.7467 0.0005 17 17 5.1538 -7.0671 0.0004 18 6 3.7400 -5.0814 -1.1781 19 6 2.8371 -4.0348 -1.1786 20 1 -0.4850 0.8401 -0.0004 21 1 -1.2977 -3.1746 -0.2321 22 1 -1.2787 -3.4724 -1.8684 23 1 2.0468 -3.9995 2.1008 24 1 3.6457 -5.8719 2.1016 25 1 4.2176 -5.3830 -2.0986 26 1 2.6093 -3.5188 -2.0996 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260715569.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:25 Heat of formation + Delta-G solvation = -7.403794 kcal Electronic energy + Delta-G solvation = -13274.001774 eV Core-core repulsion = 10765.321396 eV Total energy + Delta-G solvation = -2508.680378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.22713 -37.71152 -36.93274 -34.60738 -32.49330 -31.86873 -29.94424 -28.16492 -24.92187 -23.56447 -21.89978 -18.77803 -18.11128 -17.14135 -16.80631 -16.63385 -15.96031 -15.55271 -14.94202 -14.54989 -14.28658 -14.13044 -13.66887 -13.21459 -12.84938 -12.51769 -12.33014 -12.27865 -12.15899 -11.66886 -11.43609 -11.20460 -10.62519 -9.85071 -9.42362 -9.35517 -8.24419 -6.44080 0.37177 0.49144 1.22140 1.41908 1.43561 1.51334 2.33428 2.49623 2.89236 3.19719 3.98537 4.07512 4.24108 4.55743 4.59817 4.89099 4.92602 4.99190 5.20198 5.35238 5.45225 5.65554 5.87099 5.96978 6.09733 6.31837 6.59877 6.86500 7.30421 8.81593 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.035074 B = 0.007470 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.116243 B = 3747.604619 C = 4192.334302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.256 3.744 10 H 0.008 0.992 11 O -0.241 6.241 12 N -0.686 5.686 13 C -0.075 4.075 14 C -0.118 4.118 15 C -0.108 4.108 16 C -0.054 4.054 17 Cl -0.071 7.071 18 C -0.113 4.113 19 C -0.097 4.097 20 H 0.266 0.734 21 H 0.332 0.668 22 H 0.355 0.645 23 H 0.130 0.870 24 H 0.152 0.848 25 H 0.146 0.854 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -8.733 0.619 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.199 3.801 10 H 0.026 0.974 11 O -0.255 6.255 12 N -0.250 5.250 13 C -0.076 4.076 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.080 4.080 17 Cl -0.042 7.042 18 C -0.132 4.132 19 C -0.116 4.116 20 H 0.075 0.925 21 H 0.141 0.859 22 H 0.167 0.833 23 H 0.148 0.852 24 H 0.169 0.831 25 H 0.164 0.836 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.314 -9.256 0.539 10.686 hybrid contribution -0.557 1.662 -0.074 1.755 sum 4.757 -7.593 0.465 8.972 Atomic orbital electron populations 1.70053 1.07406 1.27981 1.47692 1.25841 0.95714 1.02713 0.92909 0.85544 0.78443 0.78155 0.79134 1.19705 1.20583 1.19008 1.21319 0.93073 0.90292 1.53307 0.91936 1.18461 0.86226 0.90121 0.85329 0.97409 1.90862 1.31808 1.65551 1.37293 1.64383 1.08057 1.43129 1.09475 1.21025 0.96954 0.95781 0.93826 1.21105 0.98813 0.95710 0.98049 1.21136 0.96616 0.97321 0.97615 1.20866 0.97602 0.93954 0.95591 1.98323 1.60363 1.46595 1.98922 1.21144 0.98485 0.95779 0.97748 1.20869 0.95898 0.96548 0.98262 0.92541 0.85894 0.83301 0.85180 0.83056 0.83646 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.80 12.84 21.45 0.28 -49.52 15 2 C 0.03 1.70 5.40 84.66 0.46 2.15 15 3 Si 0.96 42.19 29.54 68.60 2.03 44.21 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 7 C -0.54 -29.38 8.77 25.60 0.22 -29.16 15 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 15 9 C 0.26 12.88 2.42 29.10 0.07 12.95 15 10 H 0.01 0.44 7.83 -2.39 -0.02 0.43 15 11 O -0.24 -12.19 10.32 -50.16 -0.52 -12.70 15 12 N -0.69 -28.08 10.78 37.02 0.40 -27.68 15 13 C -0.08 -3.26 4.91 -19.86 -0.10 -3.36 15 14 C -0.12 -4.42 9.67 22.27 0.22 -4.20 15 15 C -0.11 -3.41 9.83 22.29 0.22 -3.19 15 16 C -0.05 -1.67 6.32 22.32 0.14 -1.53 15 17 Cl -0.07 -1.83 28.96 -2.72 -0.08 -1.91 15 18 C -0.11 -3.75 9.83 22.29 0.22 -3.53 15 19 C -0.10 -3.90 9.35 22.27 0.21 -3.69 15 20 H 0.27 14.03 8.31 -92.70 -0.77 13.26 15 21 H 0.33 13.25 9.06 -89.70 -0.81 12.44 15 22 H 0.36 12.49 9.26 -89.69 -0.83 11.66 15 23 H 0.13 4.58 8.04 -2.91 -0.02 4.55 15 24 H 0.15 3.81 8.06 -2.91 -0.02 3.79 15 25 H 0.15 4.04 8.06 -2.91 -0.02 4.02 15 26 H 0.12 4.87 7.78 -2.91 -0.02 4.85 15 Total: -1.00 -58.95 254.37 3.34 -55.62 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.43 Total: 25.54 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 1.66 Total: -33.56 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: 0.67 Total: -77.20 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.52 Total: -12.70 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -58.95 3.34 -55.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715569.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.213 kcal (2) G-P(sol) polarization free energy of solvation -58.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds