Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47055 * 2 1 4 4 C 1.46899 * 110.99863 * 158.42180 * 3 2 1 5 5 C 1.52996 * 109.47438 * 288.38623 * 4 3 2 6 6 C 1.46892 * 111.00209 * 282.38328 * 3 2 1 7 7 C 1.50703 * 110.28675 * 304.02992 * 6 3 2 8 8 H 1.08002 * 119.99879 * 358.58062 * 7 6 3 9 9 C 1.37875 * 119.99997 * 178.57237 * 7 6 3 10 10 N 1.31513 * 120.00410 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99999 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46880 * 90.00258 * 11 9 7 13 13 H 1.48498 * 109.47508 * 210.00071 * 11 9 7 14 14 H 1.48500 * 109.47199 * 330.00592 * 11 9 7 15 15 C 1.54258 * 110.32444 * 181.90817 * 6 3 2 16 16 C 1.54386 * 105.06130 * 240.99782 * 15 6 3 17 17 N 1.48568 * 104.69727 * 336.08596 * 16 15 6 18 18 C 1.46899 * 111.00013 * 159.09667 * 17 16 15 19 19 C 1.48855 * 104.07375 * 39.46911 * 17 16 15 20 20 H 1.09007 * 109.47086 * 189.37325 * 1 2 3 21 21 H 1.08998 * 109.47540 * 309.37725 * 1 2 3 22 22 H 1.09001 * 109.47640 * 69.38278 * 1 2 3 23 23 H 1.09003 * 109.46974 * 240.00513 * 2 1 3 24 24 H 1.08996 * 109.47114 * 120.00635 * 2 1 3 25 25 H 1.08996 * 109.46870 * 48.39039 * 4 3 2 26 26 H 1.09002 * 109.46643 * 168.38543 * 4 3 2 27 27 H 1.09006 * 109.47059 * 65.80067 * 5 4 3 28 28 H 1.09003 * 109.47534 * 185.79623 * 5 4 3 29 29 H 1.09000 * 109.47508 * 305.80042 * 5 4 3 30 30 H 0.96999 * 120.00293 * 179.97438 * 10 9 7 31 31 H 1.08995 * 110.32728 * 122.10447 * 15 6 3 32 32 H 1.09000 * 110.41202 * 359.93447 * 15 6 3 33 33 H 1.09003 * 110.40864 * 94.92351 * 16 15 6 34 34 H 1.08996 * 110.41444 * 217.25022 * 16 15 6 35 35 H 1.08997 * 109.47006 * 59.87135 * 18 17 16 36 36 H 1.08995 * 109.47358 * 179.87829 * 18 17 16 37 37 H 1.09005 * 109.47048 * 299.87888 * 18 17 16 38 38 H 1.09005 * 110.39274 * 201.75382 * 19 17 16 39 39 H 1.09009 * 110.49818 * 79.38772 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3975 1.4562 0.5044 5 6 3.4027 1.1977 2.0123 6 6 1.9179 1.9794 -1.3394 7 6 2.6570 1.1334 -2.3440 8 1 3.1797 0.2451 -2.0215 9 6 2.6657 1.4934 -3.6749 10 7 2.0295 2.5753 -4.0677 11 14 3.5824 0.4452 -4.9201 12 1 2.6682 -0.5916 -5.4629 13 1 4.0692 1.3052 -6.0284 14 1 4.7385 -0.2116 -4.2587 15 6 2.4797 3.4160 -1.3322 16 6 1.2915 4.3135 -1.7398 17 7 0.3838 3.4154 -2.4991 18 6 -0.9829 3.9529 -2.5310 19 6 0.4375 2.1297 -1.7508 20 1 -0.3633 -1.0140 0.1674 21 1 -0.3634 0.6519 0.7943 22 1 -0.3634 0.3619 -0.9618 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.0067 0.7032 0.0045 26 1 3.8069 2.4463 0.3040 27 1 3.0905 0.1715 2.2061 28 1 4.4082 1.3516 2.4040 29 1 2.7130 1.8858 2.5013 30 1 2.0359 2.8288 -5.0040 31 1 3.2900 3.5093 -2.0552 32 1 2.8305 3.6820 -0.3351 33 1 0.7882 4.7029 -0.8548 34 1 1.6332 5.1323 -2.3730 35 1 -0.9770 4.9324 -3.0092 36 1 -1.6261 3.2772 -3.0948 37 1 -1.3598 4.0481 -1.5127 38 1 0.1358 1.3030 -2.3940 39 1 -0.1998 2.1752 -0.8676 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 26.963397 kcal Electronic energy + Delta-G solvation = -17670.068775 eV Core-core repulsion = 15227.387451 eV Total energy + Delta-G solvation = -2442.681324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41574 -37.29418 -34.42181 -32.84497 -31.99550 -29.59953 -28.41484 -26.92187 -25.40403 -23.51275 -22.14114 -21.45619 -20.44346 -17.88638 -17.28586 -16.36520 -15.99798 -15.61855 -15.26051 -14.88167 -14.78568 -14.43944 -13.92111 -13.47138 -13.17265 -13.07771 -12.91758 -12.82059 -12.72344 -12.43187 -12.27799 -12.13144 -11.95536 -11.85674 -11.48406 -11.38885 -11.29005 -10.93341 -10.89114 -10.25670 -8.84324 -8.59139 -7.57760 -5.95165 1.40382 1.45350 1.49936 2.53278 3.33712 3.38570 3.83720 4.27997 4.34873 4.43278 4.48148 4.58127 4.61546 4.71481 4.75694 4.78320 4.87988 4.89083 4.95195 5.01187 5.06974 5.08683 5.20406 5.25081 5.28357 5.39372 5.48755 5.51133 5.56091 5.60967 5.82619 5.94233 6.34889 6.46278 6.62444 6.68644 6.87154 7.20064 7.69152 9.16108 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.014490 C = 0.010904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.054338 B = 1931.851329 C = 2567.295225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.053 3.947 5 C -0.133 4.133 6 C 0.231 3.769 7 C -0.562 4.562 8 H 0.035 0.965 9 C 0.041 3.959 10 N -0.818 5.818 11 Si 0.916 3.084 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.283 1.283 15 C -0.090 4.090 16 C 0.062 3.938 17 N -0.468 5.468 18 C 0.016 3.984 19 C 0.086 3.914 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.010 0.990 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.248 0.752 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 0.081 7.671 7.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 N -0.256 5.256 4 C -0.075 4.075 5 C -0.190 4.190 6 C 0.142 3.858 7 C -0.601 4.601 8 H 0.053 0.947 9 C -0.166 4.166 10 N -0.451 5.451 11 Si 0.744 3.256 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.209 1.209 15 C -0.129 4.129 16 C -0.066 4.066 17 N -0.191 5.191 18 C -0.133 4.133 19 C -0.042 4.042 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.302 0.443 7.242 7.612 hybrid contribution 0.818 -0.998 -1.026 1.649 sum -1.484 -0.556 6.216 6.415 Atomic orbital electron populations 1.21961 0.95219 1.01120 1.01737 1.21992 0.96172 0.89963 0.99560 1.62575 1.20505 1.17677 1.24850 1.21957 0.89710 1.00182 0.95632 1.21724 1.01782 1.01468 0.94069 1.19259 0.91525 0.91042 0.83995 1.21378 1.34926 1.10461 0.93363 0.94677 1.25454 0.95897 0.95995 0.99205 1.70508 1.37854 1.22078 1.14650 0.86277 0.79273 0.79562 0.80493 1.21368 1.21464 1.20902 1.22257 0.97134 0.96121 0.97398 1.22673 0.94493 0.95565 0.93907 1.65715 1.04924 1.01855 1.46557 1.22544 0.91888 1.00136 0.98782 1.23086 0.97251 0.91424 0.92476 0.91822 0.92529 0.93345 0.95818 0.91264 0.97163 0.91862 0.92911 0.91391 0.92236 0.94212 0.94214 0.93056 0.95822 0.92922 0.91788 0.92736 0.96588 0.94750 0.95924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.72 71.98 0.63 -4.26 16 2 C 0.05 1.96 5.33 86.30 0.46 2.42 16 3 N -0.53 -21.69 4.23 -845.90 -3.58 -25.27 16 4 C 0.05 2.00 4.95 86.30 0.43 2.43 16 5 C -0.13 -3.78 9.88 71.98 0.71 -3.07 16 6 C 0.23 10.81 0.44 3.68 0.00 10.81 16 7 C -0.56 -29.63 6.32 25.60 0.16 -29.47 16 8 H 0.04 1.93 6.18 -2.91 -0.02 1.91 16 9 C 0.04 2.20 4.89 84.65 0.41 2.62 16 10 N -0.82 -44.36 9.04 21.45 0.19 -44.16 16 11 Si 0.92 43.56 29.54 68.60 2.03 45.59 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 15 C -0.09 -4.14 4.90 31.49 0.15 -3.99 16 16 C 0.06 2.68 6.21 86.45 0.54 3.22 16 17 N -0.47 -21.28 3.21 -906.75 -2.91 -24.19 16 18 C 0.02 0.60 9.54 127.69 1.22 1.81 16 19 C 0.09 3.99 3.06 86.39 0.26 4.25 16 20 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 22 H 0.05 1.86 4.67 -2.39 -0.01 1.85 16 23 H 0.02 1.04 5.89 -2.39 -0.01 1.03 16 24 H 0.07 2.31 6.29 -2.39 -0.02 2.29 16 25 H 0.01 0.41 7.45 -2.39 -0.02 0.39 16 26 H 0.06 2.44 5.63 -2.39 -0.01 2.43 16 27 H 0.05 1.42 6.70 -2.38 -0.02 1.41 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.25 13.30 8.31 -92.71 -0.77 12.52 16 31 H 0.04 2.03 7.08 -2.39 -0.02 2.02 16 32 H 0.05 2.16 6.15 -2.39 -0.01 2.14 16 33 H 0.02 0.94 7.97 -2.39 -0.02 0.92 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.02 0.55 7.98 -2.38 -0.02 0.53 16 38 H 0.03 1.77 6.88 -2.38 -0.02 1.76 16 39 H 0.02 1.00 6.22 -2.38 -0.01 0.99 16 Total: -1.00 -56.22 281.93 1.72 -54.50 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.01 Total: 6.77 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 4.98 Total: -13.23 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -6.29 Total: -93.62 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -56.22 1.72 -54.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.463 kcal (2) G-P(sol) polarization free energy of solvation -56.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds