Wall clock time and date at job start Mon Mar 30 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47050 * 2 1 4 4 C 1.46900 * 111.00151 * 174.57943 * 3 2 1 5 5 C 1.50704 * 109.51940 * 301.60793 * 4 3 2 6 6 H 1.07991 * 119.99794 * 124.69474 * 5 4 3 7 7 C 1.37881 * 119.99845 * 304.68846 * 5 4 3 8 8 N 1.31514 * 119.99858 * 5.73276 * 7 5 4 9 9 Si 1.86798 * 120.00076 * 185.73044 * 7 5 4 10 10 H 1.48509 * 109.46872 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47240 * 119.99994 * 9 7 5 12 12 H 1.48490 * 109.47415 * 240.00253 * 9 7 5 13 13 C 1.53123 * 109.57478 * 61.76312 * 4 3 2 14 14 C 1.53036 * 109.27423 * 62.28535 * 13 4 3 15 15 N 1.46848 * 109.52396 * 59.18177 * 14 13 4 16 16 C 1.46898 * 110.99900 * 174.15956 * 15 14 13 17 17 C 1.46844 * 111.19590 * 298.25207 * 15 14 13 18 18 H 1.09011 * 109.46365 * 301.72987 * 17 15 14 19 19 C 1.52996 * 109.46463 * 181.76272 * 17 15 14 20 20 C 1.53032 * 109.52576 * 61.74433 * 17 15 14 21 21 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47477 * 300.00228 * 1 2 3 23 23 H 1.08998 * 109.47338 * 60.00087 * 1 2 3 24 24 H 1.08998 * 109.47477 * 239.99772 * 2 1 3 25 25 H 1.09005 * 109.46970 * 119.99733 * 2 1 3 26 26 H 1.00905 * 110.99839 * 298.53079 * 3 2 1 27 27 H 0.97003 * 119.99561 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.49858 * 182.22536 * 13 4 3 29 29 H 1.08993 * 109.50312 * 302.34323 * 13 4 3 30 30 H 1.08996 * 109.46243 * 299.16017 * 14 13 4 31 31 H 1.08997 * 109.45743 * 179.19189 * 14 13 4 32 32 H 1.08996 * 109.47586 * 184.20994 * 16 15 14 33 33 H 1.09000 * 109.47278 * 64.20555 * 16 15 14 34 34 H 1.09009 * 109.47230 * 304.20905 * 16 15 14 35 35 H 1.08998 * 109.47598 * 59.99717 * 19 17 15 36 36 H 1.08998 * 109.47539 * 179.97438 * 19 17 15 37 37 H 1.09007 * 109.47099 * 300.00196 * 19 17 15 38 38 H 1.08999 * 109.50370 * 60.75751 * 20 17 15 39 39 H 1.09000 * 109.50833 * 180.87725 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4823 1.4263 0.1296 5 6 3.8947 0.7347 1.4035 6 1 4.6056 -0.0775 1.3711 7 6 3.3645 1.1393 2.6102 8 7 2.4166 2.0504 2.6396 9 14 3.9924 0.3931 4.2034 10 1 5.0528 -0.6014 3.9001 11 1 4.5519 1.4651 5.0654 12 1 2.8724 -0.2772 4.9114 13 6 4.1236 0.7187 -1.0675 14 6 3.7506 1.4615 -2.3525 15 7 4.2224 2.8497 -2.2714 16 6 4.0049 3.5546 -3.5417 17 6 3.5843 3.5631 -1.1578 18 1 2.5020 3.5443 -1.2869 19 6 4.0697 5.0139 -1.1368 20 6 3.9521 2.8833 0.1630 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7159 1.8759 -0.8276 27 1 2.0438 2.3352 3.4886 28 1 5.2072 0.7154 -0.9504 29 1 3.7596 -0.3073 -1.1214 30 1 2.6677 1.4524 -2.4759 31 1 4.2174 0.9685 -3.2052 32 1 4.4302 4.5562 -3.4790 33 1 2.9353 3.6258 -3.7393 34 1 4.4878 3.0049 -4.3497 35 1 3.8070 5.4987 -2.0770 36 1 3.5958 5.5437 -0.3105 37 1 5.1520 5.0331 -1.0082 38 1 5.0331 2.9139 0.2994 39 1 3.4658 3.4036 0.9881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:06 Heat of formation + Delta-G solvation = 8.270066 kcal Electronic energy + Delta-G solvation = -17436.277553 eV Core-core repulsion = 14992.785625 eV Total energy + Delta-G solvation = -2443.491928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.01484 -35.46011 -32.40464 -31.54537 -31.18859 -27.82279 -26.31972 -25.95725 -24.08980 -21.93576 -20.99437 -20.02686 -17.90008 -16.07747 -15.10795 -14.91307 -14.62105 -14.30523 -13.79403 -13.57775 -13.23064 -12.70070 -12.52542 -12.03409 -11.82032 -11.56902 -11.29575 -11.18231 -10.96614 -10.92612 -10.72094 -10.53634 -10.43171 -10.25167 -10.02498 -9.91510 -9.45723 -9.17412 -8.61758 -8.27897 -7.68060 -6.64976 -5.73516 -3.89951 3.35212 3.44524 3.48014 4.49691 4.53560 5.37185 5.51873 5.58888 5.65061 5.72148 5.81458 5.92813 5.99976 6.05950 6.10024 6.11727 6.24926 6.31269 6.40180 6.43745 6.54120 6.62785 6.69718 6.70785 6.86444 7.02714 7.11532 7.20629 7.32615 7.46876 7.67357 7.80081 7.93202 8.02744 8.36694 8.73707 8.98037 9.30497 9.75197 11.23745 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.010895 C = 0.009265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.120289 B = 2569.424695 C = 3021.374721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 N -0.638 5.638 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.086 3.914 8 N -0.834 5.834 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.287 1.287 13 C -0.141 4.141 14 C 0.059 3.941 15 N -0.536 5.536 16 C 0.023 3.977 17 C 0.075 3.925 18 H 0.036 0.964 19 C -0.142 4.142 20 C -0.082 4.082 21 H 0.038 0.962 22 H 0.060 0.940 23 H 0.034 0.966 24 H -0.004 1.004 25 H 0.081 0.919 26 H 0.291 0.709 27 H 0.250 0.750 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 1.696 -8.044 8.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 N -0.268 5.268 4 C 0.157 3.843 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.121 4.121 8 N -0.468 5.468 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.214 1.214 13 C -0.181 4.181 14 C -0.069 4.069 15 N -0.262 5.262 16 C -0.126 4.126 17 C -0.032 4.032 18 H 0.054 0.946 19 C -0.200 4.200 20 C -0.121 4.121 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.014 0.986 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.207 1.898 -7.141 7.391 hybrid contribution -0.324 -0.725 -0.226 0.826 sum -0.118 1.173 -7.366 7.460 Atomic orbital electron populations 1.21744 0.97797 0.99339 1.01113 1.21599 0.92630 0.92079 0.99391 1.60765 1.13085 1.12269 1.40656 1.18507 0.83256 0.91528 0.91012 1.20833 1.26332 1.18734 0.90469 0.93069 1.24896 0.94236 0.94950 0.97990 1.70177 1.23576 1.29031 1.24065 0.86898 0.78828 0.79283 0.85052 1.20054 1.21195 1.21370 1.22369 1.01698 0.98544 0.95513 1.22083 0.96619 0.88982 0.99177 1.61998 1.59003 1.02100 1.03086 1.22383 0.98463 0.99473 0.92279 1.21873 0.95414 0.93059 0.92888 0.94633 1.21890 1.01658 0.95963 1.00485 1.21594 0.99592 0.97382 0.93482 0.94247 0.92129 0.94720 0.98603 0.90063 0.89208 0.93953 0.92189 0.92884 0.96069 0.92592 0.91480 0.96564 0.92455 0.93822 0.92386 0.92407 0.93417 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 10.22 37.16 0.38 -2.28 16 2 C 0.07 1.57 5.68 -3.82 -0.02 1.54 16 3 N -0.64 -14.59 4.86 -101.01 -0.49 -15.08 16 4 C 0.25 5.75 0.29 -132.63 -0.04 5.72 16 5 C -0.52 -13.82 6.53 -34.44 -0.22 -14.04 16 6 H 0.05 1.38 7.75 -52.49 -0.41 0.98 16 7 C 0.09 2.29 5.14 -17.82 -0.09 2.20 16 8 N -0.83 -22.80 11.09 55.43 0.61 -22.18 16 9 Si 0.87 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 C -0.14 -2.97 4.57 -26.65 -0.12 -3.09 16 14 C 0.06 1.09 5.23 -3.83 -0.02 1.07 16 15 N -0.54 -9.61 4.75 -234.93 -1.12 -10.73 16 16 C 0.02 0.33 9.05 60.06 0.54 0.87 16 17 C 0.08 1.44 2.21 -67.73 -0.15 1.29 16 18 H 0.04 0.72 6.68 -51.92 -0.35 0.37 16 19 C -0.14 -2.34 8.76 37.16 0.33 -2.01 16 20 C -0.08 -1.86 4.15 -26.65 -0.11 -1.97 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.00 -0.08 6.59 -51.93 -0.34 -0.42 16 25 H 0.08 1.98 6.79 -51.93 -0.35 1.62 16 26 H 0.29 6.36 5.39 -39.29 -0.21 6.14 16 27 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 1.11 6.46 -51.93 -0.34 0.78 16 30 H 0.02 0.40 6.80 -51.93 -0.35 0.04 16 31 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.76 8.09 -51.92 -0.42 0.34 16 35 H 0.04 0.62 6.33 -51.93 -0.33 0.30 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 2.26 6.76 -51.93 -0.35 1.91 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -26.70 288.77 -7.90 -34.60 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.71 Total: 3.89 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.47 Total: -10.71 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.99 Total: -47.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.70 -7.90 -34.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.868 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds