Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.47352 * 2 1 4 4 C 1.46895 * 111.00090 * 182.92239 * 3 2 1 5 5 C 1.50704 * 109.57543 * 295.93842 * 4 3 2 6 6 H 1.08000 * 119.99870 * 145.39258 * 5 4 3 7 7 C 1.37877 * 119.99777 * 325.38415 * 5 4 3 8 8 N 1.31513 * 119.99796 * 173.54955 * 7 5 4 9 9 Si 1.86796 * 120.00250 * 353.55738 * 7 5 4 10 10 H 1.48502 * 109.47384 * 92.87517 * 9 7 5 11 11 H 1.48505 * 109.47516 * 212.87842 * 9 7 5 12 12 H 1.48500 * 109.47155 * 332.87763 * 9 7 5 13 13 C 1.53116 * 109.52623 * 56.09775 * 4 3 2 14 14 C 1.53038 * 109.28292 * 177.55855 * 13 4 3 15 15 N 1.46846 * 109.52072 * 300.81992 * 14 13 4 16 16 C 1.46907 * 110.99966 * 185.83332 * 15 14 13 17 17 C 1.46845 * 111.19836 * 61.74440 * 15 14 13 18 18 H 1.09005 * 109.45966 * 58.26293 * 17 15 14 19 19 C 1.52998 * 109.46374 * 178.24182 * 17 15 14 20 20 C 1.53039 * 109.52183 * 298.25299 * 17 15 14 21 21 H 1.08999 * 109.47136 * 303.44198 * 1 2 3 22 22 H 1.08997 * 109.47413 * 63.43806 * 1 2 3 23 23 H 1.09000 * 109.47055 * 183.44171 * 1 2 3 24 24 H 1.08999 * 109.47354 * 240.00427 * 2 1 3 25 25 H 1.09001 * 109.47666 * 120.00246 * 2 1 3 26 26 H 1.00901 * 110.99619 * 306.87630 * 3 2 1 27 27 H 0.96997 * 119.99987 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.50235 * 57.61718 * 13 4 3 29 29 H 1.09002 * 109.50478 * 297.50137 * 13 4 3 30 30 H 1.09000 * 109.46635 * 180.80522 * 14 13 4 31 31 H 1.08998 * 109.45993 * 60.83212 * 14 13 4 32 32 H 1.08999 * 109.47015 * 295.79369 * 16 15 14 33 33 H 1.09003 * 109.46798 * 55.79519 * 16 15 14 34 34 H 1.09000 * 109.47012 * 175.79050 * 16 15 14 35 35 H 1.09006 * 109.47348 * 180.02562 * 19 17 15 36 36 H 1.09005 * 109.46837 * 300.04698 * 19 17 15 37 37 H 1.09001 * 109.47506 * 60.04964 * 19 17 15 38 38 H 1.09005 * 109.50819 * 179.11807 * 20 17 15 39 39 H 1.08998 * 109.50798 * 299.24070 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4864 1.4248 -0.0699 5 6 4.0683 0.7959 1.1699 6 1 4.9882 0.2335 1.1093 7 6 3.4262 0.9389 2.3817 8 7 3.8620 0.2874 3.4377 9 14 1.9372 2.0579 2.5234 10 1 0.6998 1.2645 2.3122 11 1 1.9065 2.6724 3.8750 12 1 2.0214 3.1265 1.4957 13 6 3.9610 0.6544 -1.3052 14 6 5.4850 0.7507 -1.4062 15 7 5.8821 2.1611 -1.5044 16 6 7.3265 2.2860 -1.7417 17 6 5.4788 2.9108 -0.3078 18 1 5.9303 2.4569 0.5744 19 6 5.9493 4.3613 -0.4324 20 6 3.9546 2.8790 -0.1740 21 1 -0.3633 0.5663 0.8575 22 1 -0.3634 0.4595 -0.9192 23 1 -0.3633 -1.0258 0.0617 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6073 1.9143 -0.7536 27 1 3.4100 0.3876 4.2900 28 1 3.5091 1.0855 -2.1986 29 1 3.6675 -0.3916 -1.2167 30 1 5.8248 0.2153 -2.2927 31 1 5.9365 0.3072 -0.5188 32 1 7.8710 1.8933 -0.8831 33 1 7.5982 1.7214 -2.6336 34 1 7.5817 3.3360 -1.8847 35 1 5.6504 4.9178 0.4560 36 1 7.0350 4.3841 -0.5276 37 1 5.4975 4.8154 -1.3143 38 1 3.6565 3.4222 0.7227 39 1 3.5025 3.3449 -1.0496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -11.492706 kcal Electronic energy + Delta-G solvation = -17514.246404 eV Core-core repulsion = 15069.897498 eV Total energy + Delta-G solvation = -2444.348906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71074 -37.68065 -34.33499 -33.35331 -33.19280 -30.00250 -28.02615 -27.29766 -25.99248 -23.72319 -22.95624 -21.19692 -20.56262 -18.16648 -17.01858 -16.67566 -16.30025 -16.09462 -15.46504 -15.33439 -14.89963 -14.79469 -14.10574 -14.04309 -13.48080 -13.09274 -12.98272 -12.79405 -12.75683 -12.55893 -12.42164 -12.18861 -12.08952 -11.81603 -11.79802 -11.55358 -11.41603 -11.09425 -10.83354 -10.40009 -9.16618 -8.82559 -8.12894 -6.22383 1.66317 1.68680 1.93963 2.70116 3.10863 3.20725 3.50080 4.11845 4.19478 4.26464 4.35409 4.37125 4.51167 4.60452 4.62119 4.67796 4.70861 4.76098 4.85051 4.91144 4.97445 5.00826 5.03141 5.09722 5.17252 5.23635 5.27549 5.31688 5.40091 5.47349 5.59413 5.81047 6.03967 6.27827 6.31103 6.52418 6.70588 6.99460 7.54381 8.97412 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.012058 C = 0.010573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.257035 B = 2321.515793 C = 2647.575814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 N -0.678 5.678 4 C 0.207 3.793 5 C -0.493 4.493 6 H 0.027 0.973 7 C 0.021 3.979 8 N -0.959 5.959 9 Si 1.016 2.984 10 H -0.281 1.281 11 H -0.379 1.379 12 H -0.244 1.244 13 C -0.119 4.119 14 C 0.069 3.931 15 N -0.534 5.534 16 C 0.021 3.979 17 C 0.090 3.910 18 H 0.012 0.988 19 C -0.138 4.138 20 C -0.091 4.091 21 H 0.044 0.956 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.341 0.659 27 H 0.255 0.745 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.007 0.993 32 H 0.008 0.992 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 4.897 -12.514 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 N -0.312 5.312 4 C 0.117 3.883 5 C -0.531 4.531 6 H 0.045 0.955 7 C -0.176 4.176 8 N -0.599 5.599 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.317 1.317 12 H -0.170 1.170 13 C -0.158 4.158 14 C -0.059 4.059 15 N -0.259 5.259 16 C -0.126 4.126 17 C -0.019 4.019 18 H 0.030 0.970 19 C -0.195 4.195 20 C -0.130 4.130 21 H 0.063 0.937 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.160 0.840 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.032 5.089 -12.123 13.189 hybrid contribution 0.255 -0.718 0.892 1.173 sum -0.777 4.371 -11.232 12.077 Atomic orbital electron populations 1.21888 0.94319 1.02220 1.02154 1.21810 0.95220 0.89922 1.00247 1.60110 1.08760 1.13355 1.48975 1.18969 0.83736 0.92893 0.92686 1.20878 1.07821 1.32369 0.91986 0.95500 1.25878 1.00565 0.96239 0.94897 1.70150 1.43811 1.44489 1.01485 0.84571 0.79211 0.80207 0.70453 1.20821 1.31663 1.16973 1.22024 0.95433 1.00066 0.98292 1.21899 0.96211 0.88876 0.98945 1.62114 1.15532 1.10753 1.37527 1.22480 0.86901 1.03229 1.00038 1.21452 0.95773 0.94636 0.90059 0.96955 1.21867 1.01369 0.93980 1.02311 1.21758 0.94378 0.96929 0.99907 0.93684 0.90829 0.91353 0.94011 0.93832 0.83962 0.93655 0.91479 0.92923 0.90247 0.97470 0.97371 0.90318 0.89512 0.92545 0.91613 0.90965 0.93343 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 10.08 71.98 0.73 -3.85 16 2 C 0.06 2.16 4.68 86.30 0.40 2.56 16 3 N -0.68 -26.74 1.95 -473.50 -0.92 -27.66 16 4 C 0.21 8.83 0.31 2.86 0.00 8.84 16 5 C -0.49 -26.95 6.37 25.60 0.16 -26.79 16 6 H 0.03 1.68 6.47 -2.91 -0.02 1.66 16 7 C 0.02 1.23 4.71 84.65 0.40 1.63 16 8 N -0.96 -61.63 13.96 21.45 0.30 -61.33 16 9 Si 1.02 51.34 23.34 68.60 1.60 52.95 16 10 H -0.28 -13.55 5.19 99.48 0.52 -13.04 16 11 H -0.38 -20.82 7.11 99.48 0.71 -20.11 16 12 H -0.24 -11.20 5.03 99.48 0.50 -10.70 16 13 C -0.12 -4.44 4.43 30.65 0.14 -4.30 16 14 C 0.07 2.54 5.26 86.33 0.45 2.99 16 15 N -0.53 -18.01 4.75 -897.15 -4.26 -22.27 16 16 C 0.02 0.59 9.05 127.69 1.16 1.75 16 17 C 0.09 3.36 2.24 44.94 0.10 3.46 16 18 H 0.01 0.57 7.31 -2.38 -0.02 0.56 16 19 C -0.14 -4.03 8.77 71.98 0.63 -3.40 16 20 C -0.09 -3.61 3.99 30.65 0.12 -3.49 16 21 H 0.04 1.55 6.45 -2.39 -0.02 1.53 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.46 6.13 -2.39 -0.01 1.45 16 25 H 0.04 2.05 6.40 -2.39 -0.02 2.04 16 26 H 0.34 11.29 8.64 -89.69 -0.78 10.51 16 27 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.05 2.04 6.44 -2.39 -0.02 2.02 16 30 H 0.08 2.47 8.09 -2.39 -0.02 2.45 16 31 H 0.01 0.31 6.44 -2.39 -0.02 0.30 16 32 H 0.01 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 34 H 0.09 2.03 6.21 -2.39 -0.01 2.02 16 35 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.06 1.69 6.32 -2.38 -0.02 1.68 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 2.10 5.66 -2.38 -0.01 2.09 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -66.71 275.16 0.86 -65.85 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -0.15 Total: 13.08 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.29 Total: -20.60 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.88 Total: -111.27 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 1.60 Total: 52.95 kcal Total: -66.71 0.86 -65.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.356 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds