Wall clock time and date at job start Mon Mar 30 2020 03:42:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.37745 * 123.36627 * 2 1
4 4 C 1.39889 * 125.06100 * 0.02562 * 3 2 1
5 5 H 1.07998 * 119.99576 * 352.70376 * 4 3 2
6 6 C 1.39914 * 119.99969 * 172.42394 * 4 3 2
7 7 N 1.30977 * 119.99949 * 6.44125 * 6 4 3
8 8 Si 1.86799 * 119.99796 * 186.43755 * 6 4 3
9 9 H 1.48504 * 109.46882 * 94.99107 * 8 6 4
10 10 H 1.48494 * 109.47131 * 214.98673 * 8 6 4
11 11 H 1.48495 * 109.47228 * 334.99035 * 8 6 4
12 12 S 1.75639 * 109.87975 * 179.75753 * 3 2 1
13 13 C 1.70512 * 92.09159 * 0.24008 * 12 3 2
14 14 N 1.37155 * 124.59905 * 180.02562 * 13 12 3
15 15 C 1.38530 * 110.79753 * 0.02562 * 13 12 3
16 16 C 1.46661 * 123.01668 * 179.97438 * 15 13 12
17 17 O 1.21625 * 119.99734 * 89.98081 * 16 15 13
18 18 O 1.34867 * 120.00397 * 269.97441 * 16 15 13
19 19 H 1.09002 * 109.46986 * 90.02629 * 1 2 3
20 20 H 1.08999 * 109.46944 * 210.02871 * 1 2 3
21 21 H 1.08999 * 109.46821 * 330.02669 * 1 2 3
22 22 H 0.97007 * 119.99646 * 180.02562 * 7 6 4
23 23 H 0.97001 * 120.00101 * 359.97438 * 14 13 12
24 24 H 0.96999 * 119.99479 * 179.97438 * 14 13 12
25 25 H 0.96698 * 117.00478 * 180.02562 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2646 1.1504 0.0000
4 6 1.7502 2.4513 0.0005
5 1 0.6889 2.6123 -0.1178
6 6 2.6101 3.5435 0.1602
7 7 3.9065 3.3585 0.1826
8 14 1.9090 5.2654 0.3414
9 1 1.7885 5.6016 1.7828
10 1 2.8130 6.2400 -0.3203
11 1 0.5682 5.3233 -0.2942
12 16 3.9725 0.7408 0.0070
13 6 3.6357 -0.9307 0.0025
14 7 4.5885 -1.9172 0.0056
15 6 2.2690 -1.1570 -0.0046
16 6 1.6816 -2.5008 -0.0103
17 8 1.4332 -3.0603 1.0407
18 8 1.4166 -3.1161 -1.1808
19 1 -0.3633 -0.0005 -1.0277
20 1 -0.3633 -0.8897 0.5143
21 1 -0.3633 0.8902 0.5134
22 1 4.5026 4.1157 0.2937
23 1 5.5297 -1.6825 0.0103
24 1 4.3212 -2.8496 0.0031
25 1 1.0293 -4.0009 -1.1340
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261296691.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:14
Heat of formation + Delta-G solvation = -91.587363 kcal
Electronic energy + Delta-G solvation = -13444.739200 eV
Core-core repulsion = 10934.452055 eV
Total energy + Delta-G solvation = -2510.287145 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.040 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.42353 -36.47085 -35.24308 -34.47015 -32.89771 -28.61900 -27.70414 -24.65570
-22.69988 -20.40712 -18.67260 -17.31243 -17.20495 -16.52383 -15.71585 -15.14114
-14.64178 -13.83737 -13.49572 -12.79481 -12.72984 -12.44863 -11.68296 -11.55753
-11.37373 -11.17277 -10.86369 -10.83283 -10.50945 -10.13600 -9.89389 -9.68895
-9.04409 -8.80144 -6.97719 -6.86059 -6.62469 -4.21174 2.64299 2.91263
2.99994 3.02560 3.05728 3.16932 3.65259 3.76702 3.90086 4.31205
4.98045 5.02870 6.37080 6.43690 6.67217 6.78553 6.89453 7.02948
7.06428 7.25780 7.65740 7.82184 8.14961 8.27706 8.44444 8.57581
8.62813 8.70384 9.98622
Molecular weight = 227.04amu
Principal moments of inertia in cm(-1)
A = 0.040384 B = 0.009540 C = 0.008054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.179500 B = 2934.425349 C = 3475.781158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 C -0.254 4.254
3 C 0.005 3.995
4 C -0.395 4.395
5 H 0.095 0.905
6 C 0.052 3.948
7 N -0.811 5.811
8 Si 0.932 3.068
9 H -0.268 1.268
10 H -0.276 1.276
11 H -0.260 1.260
12 S 0.220 5.780
13 C -0.042 4.042
14 N -0.854 5.854
15 C -0.182 4.182
16 C 0.565 3.435
17 O -0.533 6.533
18 O -0.517 6.517
19 H 0.036 0.964
20 H 0.030 0.970
21 H 0.053 0.947
22 H 0.294 0.706
23 H 0.391 0.609
24 H 0.381 0.619
25 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.568 -2.603 -1.882 3.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.263 4.263
3 C -0.114 4.114
4 C -0.431 4.431
5 H 0.112 0.888
6 C -0.164 4.164
7 N -0.442 5.442
8 Si 0.757 3.243
9 H -0.194 1.194
10 H -0.201 1.201
11 H -0.184 1.184
12 S 0.478 5.522
13 C -0.261 4.261
14 N -0.397 5.397
15 C -0.200 4.200
16 C 0.408 3.592
17 O -0.423 6.423
18 O -0.327 6.327
19 H 0.055 0.945
20 H 0.049 0.951
21 H 0.072 0.928
22 H 0.107 0.893
23 H 0.218 0.782
24 H 0.208 0.792
25 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 2.152 -1.371 -1.593 3.008
hybrid contribution -1.555 -1.147 0.156 1.938
sum 0.598 -2.518 -1.437 2.960
Atomic orbital electron populations
1.19871 0.92367 0.99688 0.99023 1.17899 0.94289 0.89212 1.24876
1.21078 0.92814 0.95685 1.01866 1.18940 0.95833 0.88492 1.39850
0.88759 1.26030 0.94445 1.02652 0.93280 1.68558 1.03456 1.34144
1.38050 0.85846 0.79786 0.79368 0.79310 1.19360 1.20085 1.18387
1.83887 1.08091 0.86049 1.74151 1.22585 0.90635 1.00026 1.12834
1.40641 1.05764 1.05215 1.88094 1.17094 0.91216 0.88926 1.22796
1.21160 0.72273 0.85750 0.79993 1.90811 1.50872 1.66982 1.33589
1.84911 1.76115 1.34757 1.36876 0.94515 0.95130 0.92839 0.89308
0.78214 0.79218 0.75376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -1.14 9.53 36.01 0.34 -0.79 15
2 C -0.25 -6.45 5.97 -104.69 -0.63 -7.08 15
3 C 0.01 0.14 6.14 -39.14 -0.24 -0.10 15
4 C -0.39 -9.97 8.81 -38.34 -0.34 -10.31 15
5 H 0.09 2.28 6.91 -52.49 -0.36 1.92 15
6 C 0.05 1.22 5.49 -17.29 -0.09 1.12 15
7 N -0.81 -19.41 10.65 55.55 0.59 -18.82 15
8 Si 0.93 17.86 29.57 -169.99 -5.03 12.84 15
9 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15
10 H -0.28 -5.16 7.11 56.52 0.40 -4.75 15
11 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15
12 S 0.22 5.25 19.98 -107.50 -2.15 3.10 15
13 C -0.04 -0.98 7.35 -15.06 -0.11 -1.09 15
14 N -0.85 -16.02 8.98 31.02 0.28 -15.74 15
15 C -0.18 -4.46 5.71 -106.28 -0.61 -5.07 15
16 C 0.56 12.58 6.29 34.13 0.21 12.79 15
17 O -0.53 -12.73 17.90 -19.36 -0.35 -13.08 15
18 O -0.52 -9.44 13.44 -40.95 -0.55 -9.99 15
19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15
20 H 0.03 0.66 7.54 -51.93 -0.39 0.27 15
21 H 0.05 1.15 7.12 -51.93 -0.37 0.78 15
22 H 0.29 6.38 8.30 -40.82 -0.34 6.04 15
23 H 0.39 6.27 8.95 -40.82 -0.37 5.90 15
24 H 0.38 6.68 8.25 -40.82 -0.34 6.34 15
25 H 0.39 4.83 9.11 45.56 0.42 5.25 15
LS Contribution 241.45 15.07 3.64 3.64
Total: -1.00 -29.74 241.45 -5.99 -35.73
By element:
Atomic # 1 Polarization: 13.82 SS G_CDS: -0.97 Total: 12.85 kcal
Atomic # 6 Polarization: -9.07 SS G_CDS: -1.46 Total: -10.53 kcal
Atomic # 7 Polarization: -35.43 SS G_CDS: 0.87 Total: -34.56 kcal
Atomic # 8 Polarization: -22.17 SS G_CDS: -0.90 Total: -23.07 kcal
Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal
Atomic # 16 Polarization: 5.25 SS G_CDS: -2.15 Total: 3.10 kcal
Total LS contribution 3.64 Total: 3.64 kcal
Total: -29.74 -5.99 -35.73 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261296691.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.857 kcal
(2) G-P(sol) polarization free energy of solvation -29.743 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds