Wall clock time and date at job start Mon Mar 30 2020 03:42:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.37745 * 123.36627 * 2 1
4 4 C 1.39889 * 125.06100 * 0.02562 * 3 2 1
5 5 H 1.07998 * 119.99576 * 352.70376 * 4 3 2
6 6 C 1.39914 * 119.99969 * 172.42394 * 4 3 2
7 7 N 1.30977 * 119.99949 * 6.44125 * 6 4 3
8 8 Si 1.86799 * 119.99796 * 186.43755 * 6 4 3
9 9 H 1.48504 * 109.46882 * 94.99107 * 8 6 4
10 10 H 1.48494 * 109.47131 * 214.98673 * 8 6 4
11 11 H 1.48495 * 109.47228 * 334.99035 * 8 6 4
12 12 S 1.75639 * 109.87975 * 179.75753 * 3 2 1
13 13 C 1.70512 * 92.09159 * 0.24008 * 12 3 2
14 14 N 1.37155 * 124.59905 * 180.02562 * 13 12 3
15 15 C 1.38530 * 110.79753 * 0.02562 * 13 12 3
16 16 C 1.46661 * 123.01668 * 179.97438 * 15 13 12
17 17 O 1.21625 * 119.99734 * 89.98081 * 16 15 13
18 18 O 1.34867 * 120.00397 * 269.97441 * 16 15 13
19 19 H 1.09002 * 109.46986 * 90.02629 * 1 2 3
20 20 H 1.08999 * 109.46944 * 210.02871 * 1 2 3
21 21 H 1.08999 * 109.46821 * 330.02669 * 1 2 3
22 22 H 0.97007 * 119.99646 * 180.02562 * 7 6 4
23 23 H 0.97001 * 120.00101 * 359.97438 * 14 13 12
24 24 H 0.96999 * 119.99479 * 179.97438 * 14 13 12
25 25 H 0.96698 * 117.00478 * 180.02562 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2646 1.1504 0.0000
4 6 1.7502 2.4513 0.0005
5 1 0.6889 2.6123 -0.1178
6 6 2.6101 3.5435 0.1602
7 7 3.9065 3.3585 0.1826
8 14 1.9090 5.2654 0.3414
9 1 1.7885 5.6016 1.7828
10 1 2.8130 6.2400 -0.3203
11 1 0.5682 5.3233 -0.2942
12 16 3.9725 0.7408 0.0070
13 6 3.6357 -0.9307 0.0025
14 7 4.5885 -1.9172 0.0056
15 6 2.2690 -1.1570 -0.0046
16 6 1.6816 -2.5008 -0.0103
17 8 1.4332 -3.0603 1.0407
18 8 1.4166 -3.1161 -1.1808
19 1 -0.3633 -0.0005 -1.0277
20 1 -0.3633 -0.8897 0.5143
21 1 -0.3633 0.8902 0.5134
22 1 4.5026 4.1157 0.2937
23 1 5.5297 -1.6825 0.0103
24 1 4.3212 -2.8496 0.0031
25 1 1.0293 -4.0009 -1.1340
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261296691.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:14
Heat of formation + Delta-G solvation = -112.591046 kcal
Electronic energy + Delta-G solvation = -13445.649988 eV
Core-core repulsion = 10934.452055 eV
Total energy + Delta-G solvation = -2511.197933 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.040 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-41.11125 -38.22577 -36.88114 -36.22093 -34.64005 -30.40394 -29.49587 -26.43688
-24.45584 -22.14419 -20.40832 -19.06964 -18.92670 -18.21319 -17.46136 -16.80375
-16.29446 -15.51658 -15.20495 -14.58098 -14.45468 -14.11812 -13.41572 -13.28043
-13.01696 -12.90506 -12.54534 -12.49204 -12.16874 -11.84220 -11.60267 -11.44906
-10.90029 -10.55505 -8.77316 -8.66615 -8.42819 -6.05309 0.87809 1.19168
1.31920 1.44437 1.47557 1.59446 1.90990 1.99867 2.25526 2.67573
3.17582 3.42166 4.65841 4.79375 4.88767 5.02670 5.12518 5.25721
5.44664 5.54981 5.85926 5.98962 6.32340 6.53558 6.75537 6.86442
7.01717 7.10370 8.24969
Molecular weight = 227.04amu
Principal moments of inertia in cm(-1)
A = 0.040384 B = 0.009540 C = 0.008054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.179500 B = 2934.425349 C = 3475.781158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.044 4.044
2 C -0.278 4.278
3 C -0.030 4.030
4 C -0.427 4.427
5 H 0.094 0.906
6 C 0.016 3.984
7 N -0.833 5.833
8 Si 1.002 2.998
9 H -0.266 1.266
10 H -0.265 1.265
11 H -0.258 1.258
12 S 0.220 5.780
13 C -0.034 4.034
14 N -0.838 5.838
15 C -0.219 4.219
16 C 0.575 3.425
17 O -0.556 6.556
18 O -0.508 6.508
19 H 0.046 0.954
20 H 0.031 0.969
21 H 0.054 0.946
22 H 0.303 0.697
23 H 0.405 0.595
24 H 0.390 0.610
25 H 0.419 0.581
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.666 -2.438 -2.157 3.323
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C -0.286 4.286
3 C -0.150 4.150
4 C -0.462 4.462
5 H 0.112 0.888
6 C -0.197 4.197
7 N -0.464 5.464
8 Si 0.822 3.178
9 H -0.191 1.191
10 H -0.190 1.190
11 H -0.181 1.181
12 S 0.477 5.523
13 C -0.254 4.254
14 N -0.383 5.383
15 C -0.237 4.237
16 C 0.419 3.581
17 O -0.447 6.447
18 O -0.320 6.320
19 H 0.064 0.936
20 H 0.050 0.950
21 H 0.073 0.927
22 H 0.116 0.884
23 H 0.235 0.765
24 H 0.218 0.782
25 H 0.279 0.721
Dipole moment (debyes) X Y Z Total
from point charges 2.271 -1.263 -1.891 3.214
hybrid contribution -1.516 -1.305 0.194 2.010
sum 0.755 -2.568 -1.697 3.169
Atomic orbital electron populations
1.19826 0.91119 0.99734 0.99600 1.18322 0.95633 0.89583 1.25109
1.21455 0.93957 0.96473 1.03065 1.19180 0.96292 0.89155 1.41600
0.88811 1.26875 0.94597 1.06054 0.92193 1.68572 1.04385 1.35625
1.37797 0.84829 0.79184 0.74512 0.79249 1.19058 1.18974 1.18124
1.83674 1.07403 0.86666 1.74535 1.22762 0.91177 1.00604 1.10885
1.40622 1.05966 1.04983 1.86745 1.17365 0.91920 0.90085 1.24371
1.20721 0.71852 0.85162 0.80396 1.90798 1.51953 1.67454 1.34531
1.84814 1.75760 1.36679 1.34726 0.93573 0.95008 0.92723 0.88375
0.76510 0.78157 0.72102
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.04 -1.97 9.53 71.24 0.68 -1.29 15
2 C -0.28 -14.16 5.97 -19.91 -0.12 -14.28 15
3 C -0.03 -1.57 6.14 22.55 0.14 -1.43 15
4 C -0.43 -21.71 8.81 23.08 0.20 -21.51 15
5 H 0.09 4.60 6.91 -2.91 -0.02 4.58 15
6 C 0.02 0.75 5.49 85.23 0.47 1.22 15
7 N -0.83 -39.53 10.65 21.83 0.23 -39.30 15
8 Si 1.00 35.83 29.57 68.60 2.03 37.86 15
9 H -0.27 -9.33 7.11 99.48 0.71 -8.63 15
10 H -0.27 -8.97 7.11 99.48 0.71 -8.26 15
11 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15
12 S 0.22 10.46 19.98 -56.49 -1.13 9.34 15
13 C -0.03 -1.53 7.35 83.93 0.62 -0.92 15
14 N -0.84 -30.02 8.98 -55.78 -0.50 -30.52 15
15 C -0.22 -10.63 5.71 -20.94 -0.12 -10.75 15
16 C 0.57 24.85 6.29 70.02 0.44 25.29 15
17 O -0.56 -25.91 17.90 19.43 0.35 -25.57 15
18 O -0.51 -17.40 13.44 -57.80 -0.78 -18.17 15
19 H 0.05 1.92 8.14 -2.39 -0.02 1.91 15
20 H 0.03 1.36 7.54 -2.39 -0.02 1.34 15
21 H 0.05 2.37 7.12 -2.39 -0.02 2.35 15
22 H 0.30 12.91 8.30 -92.70 -0.77 12.15 15
23 H 0.41 12.20 8.95 -92.71 -0.83 11.37 15
24 H 0.39 12.87 8.25 -92.71 -0.76 12.10 15
25 H 0.42 9.14 9.11 -74.06 -0.67 8.47 15
Total: -1.00 -62.50 241.45 1.52 -60.99
By element:
Atomic # 1 Polarization: 30.05 SS G_CDS: -0.99 Total: 29.06 kcal
Atomic # 6 Polarization: -25.99 SS G_CDS: 2.31 Total: -23.68 kcal
Atomic # 7 Polarization: -69.55 SS G_CDS: -0.27 Total: -69.82 kcal
Atomic # 8 Polarization: -43.31 SS G_CDS: -0.43 Total: -43.74 kcal
Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal
Atomic # 16 Polarization: 10.46 SS G_CDS: -1.13 Total: 9.34 kcal
Total: -62.50 1.52 -60.99 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261296691.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.604 kcal
(2) G-P(sol) polarization free energy of solvation -62.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds