Wall clock time and date at job start Mon Mar 30 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37745 * 123.36627 * 2 1 4 4 C 1.39889 * 125.06100 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99576 * 352.70376 * 4 3 2 6 6 C 1.39914 * 119.99969 * 172.42394 * 4 3 2 7 7 N 1.30977 * 119.99949 * 6.44125 * 6 4 3 8 8 Si 1.86799 * 119.99796 * 186.43755 * 6 4 3 9 9 H 1.48504 * 109.46882 * 94.99107 * 8 6 4 10 10 H 1.48494 * 109.47131 * 214.98673 * 8 6 4 11 11 H 1.48495 * 109.47228 * 334.99035 * 8 6 4 12 12 S 1.75639 * 109.87975 * 179.75753 * 3 2 1 13 13 C 1.70512 * 92.09159 * 0.24008 * 12 3 2 14 14 N 1.37155 * 124.59905 * 180.02562 * 13 12 3 15 15 C 1.38530 * 110.79753 * 0.02562 * 13 12 3 16 16 C 1.46661 * 123.01668 * 179.97438 * 15 13 12 17 17 O 1.21625 * 119.99734 * 89.98081 * 16 15 13 18 18 O 1.34867 * 120.00397 * 269.97441 * 16 15 13 19 19 H 1.09002 * 109.46986 * 90.02629 * 1 2 3 20 20 H 1.08999 * 109.46944 * 210.02871 * 1 2 3 21 21 H 1.08999 * 109.46821 * 330.02669 * 1 2 3 22 22 H 0.97007 * 119.99646 * 180.02562 * 7 6 4 23 23 H 0.97001 * 120.00101 * 359.97438 * 14 13 12 24 24 H 0.96999 * 119.99479 * 179.97438 * 14 13 12 25 25 H 0.96698 * 117.00478 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2646 1.1504 0.0000 4 6 1.7502 2.4513 0.0005 5 1 0.6889 2.6123 -0.1178 6 6 2.6101 3.5435 0.1602 7 7 3.9065 3.3585 0.1826 8 14 1.9090 5.2654 0.3414 9 1 1.7885 5.6016 1.7828 10 1 2.8130 6.2400 -0.3203 11 1 0.5682 5.3233 -0.2942 12 16 3.9725 0.7408 0.0070 13 6 3.6357 -0.9307 0.0025 14 7 4.5885 -1.9172 0.0056 15 6 2.2690 -1.1570 -0.0046 16 6 1.6816 -2.5008 -0.0103 17 8 1.4332 -3.0603 1.0407 18 8 1.4166 -3.1161 -1.1808 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8897 0.5143 21 1 -0.3633 0.8902 0.5134 22 1 4.5026 4.1157 0.2937 23 1 5.5297 -1.6825 0.0103 24 1 4.3212 -2.8496 0.0031 25 1 1.0293 -4.0009 -1.1340 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261296691.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:14 Heat of formation + Delta-G solvation = -112.591046 kcal Electronic energy + Delta-G solvation = -13445.649988 eV Core-core repulsion = 10934.452055 eV Total energy + Delta-G solvation = -2511.197933 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11125 -38.22577 -36.88114 -36.22093 -34.64005 -30.40394 -29.49587 -26.43688 -24.45584 -22.14419 -20.40832 -19.06964 -18.92670 -18.21319 -17.46136 -16.80375 -16.29446 -15.51658 -15.20495 -14.58098 -14.45468 -14.11812 -13.41572 -13.28043 -13.01696 -12.90506 -12.54534 -12.49204 -12.16874 -11.84220 -11.60267 -11.44906 -10.90029 -10.55505 -8.77316 -8.66615 -8.42819 -6.05309 0.87809 1.19168 1.31920 1.44437 1.47557 1.59446 1.90990 1.99867 2.25526 2.67573 3.17582 3.42166 4.65841 4.79375 4.88767 5.02670 5.12518 5.25721 5.44664 5.54981 5.85926 5.98962 6.32340 6.53558 6.75537 6.86442 7.01717 7.10370 8.24969 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.040384 B = 0.009540 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.179500 B = 2934.425349 C = 3475.781158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.278 4.278 3 C -0.030 4.030 4 C -0.427 4.427 5 H 0.094 0.906 6 C 0.016 3.984 7 N -0.833 5.833 8 Si 1.002 2.998 9 H -0.266 1.266 10 H -0.265 1.265 11 H -0.258 1.258 12 S 0.220 5.780 13 C -0.034 4.034 14 N -0.838 5.838 15 C -0.219 4.219 16 C 0.575 3.425 17 O -0.556 6.556 18 O -0.508 6.508 19 H 0.046 0.954 20 H 0.031 0.969 21 H 0.054 0.946 22 H 0.303 0.697 23 H 0.405 0.595 24 H 0.390 0.610 25 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 -2.438 -2.157 3.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.286 4.286 3 C -0.150 4.150 4 C -0.462 4.462 5 H 0.112 0.888 6 C -0.197 4.197 7 N -0.464 5.464 8 Si 0.822 3.178 9 H -0.191 1.191 10 H -0.190 1.190 11 H -0.181 1.181 12 S 0.477 5.523 13 C -0.254 4.254 14 N -0.383 5.383 15 C -0.237 4.237 16 C 0.419 3.581 17 O -0.447 6.447 18 O -0.320 6.320 19 H 0.064 0.936 20 H 0.050 0.950 21 H 0.073 0.927 22 H 0.116 0.884 23 H 0.235 0.765 24 H 0.218 0.782 25 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.271 -1.263 -1.891 3.214 hybrid contribution -1.516 -1.305 0.194 2.010 sum 0.755 -2.568 -1.697 3.169 Atomic orbital electron populations 1.19826 0.91119 0.99734 0.99600 1.18322 0.95633 0.89583 1.25109 1.21455 0.93957 0.96473 1.03065 1.19180 0.96292 0.89155 1.41600 0.88811 1.26875 0.94597 1.06054 0.92193 1.68572 1.04385 1.35625 1.37797 0.84829 0.79184 0.74512 0.79249 1.19058 1.18974 1.18124 1.83674 1.07403 0.86666 1.74535 1.22762 0.91177 1.00604 1.10885 1.40622 1.05966 1.04983 1.86745 1.17365 0.91920 0.90085 1.24371 1.20721 0.71852 0.85162 0.80396 1.90798 1.51953 1.67454 1.34531 1.84814 1.75760 1.36679 1.34726 0.93573 0.95008 0.92723 0.88375 0.76510 0.78157 0.72102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.97 9.53 71.24 0.68 -1.29 15 2 C -0.28 -14.16 5.97 -19.91 -0.12 -14.28 15 3 C -0.03 -1.57 6.14 22.55 0.14 -1.43 15 4 C -0.43 -21.71 8.81 23.08 0.20 -21.51 15 5 H 0.09 4.60 6.91 -2.91 -0.02 4.58 15 6 C 0.02 0.75 5.49 85.23 0.47 1.22 15 7 N -0.83 -39.53 10.65 21.83 0.23 -39.30 15 8 Si 1.00 35.83 29.57 68.60 2.03 37.86 15 9 H -0.27 -9.33 7.11 99.48 0.71 -8.63 15 10 H -0.27 -8.97 7.11 99.48 0.71 -8.26 15 11 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15 12 S 0.22 10.46 19.98 -56.49 -1.13 9.34 15 13 C -0.03 -1.53 7.35 83.93 0.62 -0.92 15 14 N -0.84 -30.02 8.98 -55.78 -0.50 -30.52 15 15 C -0.22 -10.63 5.71 -20.94 -0.12 -10.75 15 16 C 0.57 24.85 6.29 70.02 0.44 25.29 15 17 O -0.56 -25.91 17.90 19.43 0.35 -25.57 15 18 O -0.51 -17.40 13.44 -57.80 -0.78 -18.17 15 19 H 0.05 1.92 8.14 -2.39 -0.02 1.91 15 20 H 0.03 1.36 7.54 -2.39 -0.02 1.34 15 21 H 0.05 2.37 7.12 -2.39 -0.02 2.35 15 22 H 0.30 12.91 8.30 -92.70 -0.77 12.15 15 23 H 0.41 12.20 8.95 -92.71 -0.83 11.37 15 24 H 0.39 12.87 8.25 -92.71 -0.76 12.10 15 25 H 0.42 9.14 9.11 -74.06 -0.67 8.47 15 Total: -1.00 -62.50 241.45 1.52 -60.99 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.99 Total: 29.06 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 2.31 Total: -23.68 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.27 Total: -69.82 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.43 Total: -43.74 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Atomic # 16 Polarization: 10.46 SS G_CDS: -1.13 Total: 9.34 kcal Total: -62.50 1.52 -60.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296691.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.604 kcal (2) G-P(sol) polarization free energy of solvation -62.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds