Wall clock time and date at job start Mon Mar 30 2020 03:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.71033 * 125.38218 * 2 1 4 4 C 1.76083 * 90.39178 * 179.97438 * 3 2 1 5 5 C 1.39908 * 125.55847 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00283 * 180.30116 * 5 4 3 7 7 C 1.40248 * 120.00037 * 0.29945 * 5 4 3 8 8 N 1.30703 * 119.99809 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00120 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46724 * 90.00427 * 9 7 5 11 11 H 1.48500 * 109.47310 * 209.99878 * 9 7 5 12 12 H 1.48493 * 109.47379 * 330.00436 * 9 7 5 13 13 N 1.31866 * 108.88951 * 0.30821 * 4 3 2 14 14 C 1.30457 * 115.68613 * 359.76860 * 13 4 3 15 15 C 1.50706 * 122.09849 * 180.02562 * 14 13 4 16 16 C 1.50707 * 109.46858 * 269.96946 * 15 14 13 17 17 O 1.20828 * 119.99898 * 359.97438 * 16 15 14 18 18 O 1.34221 * 119.99878 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.47152 * 269.68998 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.69098 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.69079 * 1 2 3 22 22 H 0.96993 * 119.99865 * 179.97438 * 8 7 5 23 23 H 1.08992 * 109.47611 * 29.97062 * 15 14 13 24 24 H 1.09007 * 109.47001 * 149.97353 * 15 14 13 25 25 H 0.96699 * 116.99988 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4974 1.3944 0.0000 4 6 3.9399 0.3847 0.0008 5 6 5.2591 0.8506 0.0017 6 1 6.0798 0.1486 -0.0028 7 6 5.5159 2.2294 0.0083 8 7 4.5227 3.0790 0.0142 9 14 7.2773 2.8514 0.0102 10 1 7.7430 3.0233 -1.3895 11 1 7.3408 4.1561 0.7166 12 1 8.1483 1.8696 0.7046 13 7 3.5742 -0.8822 -0.0057 14 6 2.2879 -1.0995 -0.0063 15 6 1.7108 -2.4916 -0.0128 16 6 1.5173 -2.9485 -1.4359 17 8 1.8168 -2.2183 -2.3508 18 8 1.0114 -4.1661 -1.6869 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 -0.8872 -0.5186 21 1 -0.3633 0.8928 -0.5090 22 1 4.7003 4.0326 0.0192 23 1 2.3942 -3.1706 0.4970 24 1 0.7499 -2.4891 0.5018 25 1 0.9053 -4.4146 -2.6154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306253715.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:09 Heat of formation + Delta-G solvation = -83.798456 kcal Electronic energy + Delta-G solvation = -13283.461760 eV Core-core repulsion = 10773.512367 eV Total energy + Delta-G solvation = -2509.949393 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.79284 -37.69884 -35.59252 -34.25036 -31.68457 -29.55946 -27.72399 -23.98221 -22.26841 -21.12053 -18.03700 -17.60233 -17.13028 -16.14162 -15.92658 -15.07877 -14.96221 -13.72196 -13.19738 -12.72202 -12.36507 -12.19768 -11.97310 -11.84100 -11.59524 -11.48847 -11.23733 -11.02734 -10.54672 -10.33911 -10.04263 -9.58958 -9.33299 -7.73631 -7.63971 -7.13755 -7.06217 -4.69447 2.47195 2.75391 2.94012 2.96490 3.01349 3.44829 3.51835 3.70097 4.01131 4.23543 5.14285 5.48702 5.68390 6.01541 6.04484 6.27616 6.32643 6.39013 6.72867 6.83845 6.88189 7.19864 7.62978 7.91478 8.32889 8.38049 8.43510 9.74026 9.83640 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.042703 B = 0.008276 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.539100 B = 3382.333827 C = 3810.248511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.419 4.419 3 S 0.118 5.882 4 C 0.207 3.793 5 C -0.374 4.374 6 H 0.103 0.897 7 C 0.055 3.945 8 N -0.781 5.781 9 Si 0.942 3.058 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.257 1.257 13 N -0.593 5.593 14 C 0.115 3.885 15 C -0.031 4.031 16 C 0.477 3.523 17 O -0.497 6.497 18 O -0.528 6.528 19 H 0.043 0.957 20 H 0.040 0.960 21 H 0.046 0.954 22 H 0.298 0.702 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -3.707 0.300 4.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.545 4.545 3 S 0.378 5.622 4 C -0.047 4.047 5 C -0.416 4.416 6 H 0.121 0.879 7 C -0.167 4.167 8 N -0.410 5.410 9 Si 0.765 3.235 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.181 1.181 13 N -0.315 5.315 14 C -0.026 4.026 15 C -0.071 4.071 16 C 0.318 3.682 17 O -0.383 6.383 18 O -0.340 6.340 19 H 0.062 0.938 20 H 0.059 0.941 21 H 0.065 0.935 22 H 0.111 0.889 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.066 -2.412 0.463 3.929 hybrid contribution 0.185 -0.744 -0.713 1.047 sum -2.881 -3.156 -0.250 4.280 Atomic orbital electron populations 1.19645 0.90588 0.99983 0.99378 1.24716 1.00191 1.00556 1.29041 1.84144 0.97785 1.07133 1.73141 1.23748 0.96642 0.88537 0.95729 1.18984 0.91194 0.91931 1.39533 0.87942 1.26180 1.01330 0.96406 0.92810 1.68780 1.33529 1.05035 1.33673 0.85709 0.79563 0.78587 0.79603 1.18952 1.19750 1.18059 1.67153 1.13756 1.18474 1.32093 1.18722 0.89517 0.91955 1.02380 1.19705 1.02720 0.95255 0.89468 1.23696 0.72975 0.78145 0.93378 1.90733 1.45814 1.54539 1.47167 1.84555 1.77838 1.36171 1.35469 0.93825 0.94074 0.93533 0.88899 0.87521 0.87821 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.73 9.73 36.01 0.35 -0.38 15 2 C -0.42 -10.21 6.38 -35.51 -0.23 -10.43 15 3 S 0.12 3.08 20.15 -107.50 -2.17 0.91 15 4 C 0.21 5.79 7.14 -16.91 -0.12 5.67 15 5 C -0.37 -9.89 9.45 -38.20 -0.36 -10.25 15 6 H 0.10 2.62 7.85 -52.49 -0.41 2.20 15 7 C 0.05 1.31 5.50 -17.28 -0.10 1.21 15 8 N -0.78 -19.03 10.67 55.56 0.59 -18.43 15 9 Si 0.94 17.72 29.56 -169.99 -5.03 12.69 15 10 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 11 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 12 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 13 N -0.59 -16.39 10.68 -9.33 -0.10 -16.48 15 14 C 0.11 2.83 5.19 -84.37 -0.44 2.39 15 15 C -0.03 -0.60 5.68 -29.03 -0.17 -0.77 15 16 C 0.48 9.09 8.32 36.01 0.30 9.39 15 17 O -0.50 -11.63 16.79 -18.75 -0.31 -11.95 15 18 O -0.53 -7.52 13.42 -39.23 -0.53 -8.05 15 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.04 0.75 7.34 -51.93 -0.38 0.37 15 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.30 6.47 8.29 -40.82 -0.34 6.13 15 23 H 0.11 1.90 8.14 -51.93 -0.42 1.48 15 24 H 0.10 1.69 7.26 -51.93 -0.38 1.31 15 25 H 0.40 3.90 9.10 45.56 0.41 4.31 15 LS Contribution 244.26 15.07 3.68 3.68 Total: -1.00 -31.85 244.26 -5.77 -37.62 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -1.16 Total: 3.18 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.76 Total: -3.17 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.49 Total: -34.92 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.84 Total: -20.00 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.17 Total: 0.91 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.85 -5.77 -37.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306253715.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.179 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds