Wall clock time and date at job start Mon Mar 30 2020 03:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28627 * 124.70403 * 2 1 4 4 C 1.33605 * 115.77163 * 180.02562 * 3 2 1 5 5 C 1.47072 * 123.16399 * 180.02562 * 4 3 2 6 6 O 1.21579 * 120.00078 * 180.02562 * 5 4 3 7 7 O 1.34818 * 119.99593 * 0.02562 * 5 4 3 8 8 C 1.34884 * 116.99732 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99992 * 0.02562 * 8 7 5 10 10 C 1.38767 * 119.99858 * 179.97438 * 8 7 5 11 11 N 1.31444 * 120.00003 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00081 * 0.02562 * 10 8 7 13 13 H 1.48491 * 109.47151 * 89.99862 * 12 10 8 14 14 H 1.48498 * 109.46978 * 209.99902 * 12 10 8 15 15 H 1.48505 * 109.47148 * 329.99515 * 12 10 8 16 16 C 1.35350 * 113.67483 * 0.26308 * 4 3 2 17 17 C 1.50701 * 125.58859 * 179.73581 * 16 4 3 18 18 S 1.70764 * 124.70351 * 180.02562 * 2 1 3 19 19 H 1.08993 * 109.47180 * 89.97644 * 1 2 3 20 20 H 1.08993 * 109.47143 * 209.97769 * 1 2 3 21 21 H 1.09002 * 109.46519 * 329.97394 * 1 2 3 22 22 H 0.96996 * 120.00358 * 180.02562 * 11 10 8 23 23 H 1.08996 * 109.46921 * 90.00390 * 17 16 4 24 24 H 1.09001 * 109.46697 * 210.00399 * 17 16 4 25 25 H 1.08997 * 109.47083 * 330.00224 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2394 1.0574 0.0000 4 6 3.5592 0.8500 -0.0005 5 6 4.5452 1.9413 -0.0001 6 8 5.7340 1.6865 -0.0011 7 8 4.1306 3.2242 0.0015 8 6 5.0860 4.1764 0.0013 9 1 6.1287 3.8951 -0.0005 10 6 4.7290 5.5173 0.0023 11 7 5.6600 6.4453 0.0016 12 14 2.9254 6.0038 0.0046 13 1 2.4492 6.1321 1.4052 14 1 2.7625 7.3037 -0.6947 15 1 2.1309 4.9624 -0.6951 16 6 3.9036 -0.4589 -0.0067 17 6 5.3120 -0.9952 -0.0144 18 16 2.4793 -1.4039 -0.0006 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3633 -0.8901 0.5135 21 1 -0.3632 0.8898 0.5143 22 1 5.4105 7.3826 0.0026 23 1 5.6557 -1.1282 1.0113 24 1 5.3327 -1.9543 -0.5319 25 1 5.9661 -0.2909 -0.5284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306393855.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:07 Heat of formation + Delta-G solvation = -39.439977 kcal Electronic energy + Delta-G solvation = -13285.713025 eV Core-core repulsion = 10777.687160 eV Total energy + Delta-G solvation = -2508.025865 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.04845 -38.47689 -35.49190 -32.97616 -32.34306 -30.17711 -26.90205 -25.22255 -23.71606 -21.06156 -18.95315 -18.32008 -17.90287 -16.02733 -15.40797 -15.17644 -14.31007 -14.24495 -13.75501 -13.25228 -13.22488 -12.79386 -12.35856 -12.12809 -12.05644 -11.98196 -11.45671 -11.24460 -10.48193 -10.34056 -9.71854 -9.55802 -9.24808 -9.13246 -8.69948 -8.53429 -6.41093 -4.11860 0.72067 1.35905 1.75947 2.35955 3.25321 3.28924 3.48114 3.93714 4.01635 4.28209 4.46732 5.07249 5.12649 5.13861 5.33904 5.42738 5.62279 5.77344 5.87200 6.04337 6.37279 6.58771 7.68509 7.76740 8.01131 8.57593 8.97194 9.68202 10.66056 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.034010 B = 0.009037 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.095367 B = 3097.594257 C = 3900.239286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.017 3.983 3 N -0.423 5.423 4 C 0.049 3.951 5 C 0.476 3.524 6 O -0.531 6.531 7 O -0.223 6.223 8 C -0.375 4.375 9 H 0.112 0.888 10 C 0.068 3.932 11 N -0.866 5.866 12 Si 0.903 3.097 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.253 1.253 16 C -0.196 4.196 17 C -0.083 4.083 18 S 0.168 5.832 19 H 0.084 0.916 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.281 0.719 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -15.192 -0.082 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.264 4.264 3 N -0.138 5.138 4 C -0.083 4.083 5 C 0.322 3.678 6 O -0.427 6.427 7 O -0.130 6.130 8 C -0.451 4.451 9 H 0.130 0.870 10 C -0.137 4.137 11 N -0.505 5.505 12 Si 0.728 3.272 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.177 1.177 16 C -0.319 4.319 17 C -0.141 4.141 18 S 0.424 5.576 19 H 0.103 0.897 20 H 0.097 0.903 21 H 0.108 0.892 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.021 -15.503 -0.083 18.460 hybrid contribution -0.040 1.209 0.039 1.210 sum -10.061 -14.294 -0.044 17.479 Atomic orbital electron populations 1.20399 0.85069 1.04062 1.03791 1.26993 1.02063 0.91096 1.06213 1.67040 1.03364 1.30507 1.12873 1.19573 0.89092 0.91742 1.07895 1.19148 0.85753 0.82485 0.80428 1.90644 1.16934 1.83854 1.51269 1.83669 1.40005 1.13973 1.75336 1.20773 0.89224 0.84134 1.50946 0.87031 1.24561 0.99933 0.93976 0.95211 1.69608 1.33445 1.01009 1.46428 0.86214 0.83554 0.78191 0.79241 1.19730 1.20721 1.17696 1.25378 1.02742 0.95956 1.07776 1.20505 0.89001 1.01064 1.03567 1.82466 0.95218 1.12200 1.67742 0.89740 0.90285 0.89210 0.90853 0.90293 0.91726 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.46 36.01 0.38 -0.37 15 2 C 0.02 0.25 7.34 -13.62 -0.10 0.15 15 3 N -0.42 -8.55 10.60 -8.53 -0.09 -8.64 15 4 C 0.05 1.05 6.71 -84.54 -0.57 0.48 15 5 C 0.48 12.44 7.88 34.31 0.27 12.71 15 6 O -0.53 -14.34 13.36 -19.33 -0.26 -14.60 15 7 O -0.22 -6.43 8.51 -21.96 -0.19 -6.62 15 8 C -0.38 -11.55 10.11 30.93 0.31 -11.24 15 9 H 0.11 3.70 7.09 -52.49 -0.37 3.32 15 10 C 0.07 2.01 5.49 -17.52 -0.10 1.91 15 11 N -0.87 -25.96 13.96 55.48 0.77 -25.19 15 12 Si 0.90 22.48 28.62 -169.99 -4.86 17.62 15 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.25 -6.40 7.11 56.52 0.40 -6.00 15 16 C -0.20 -3.37 6.40 -35.34 -0.23 -3.59 15 17 C -0.08 -1.25 9.64 36.01 0.35 -0.90 15 18 S 0.17 2.13 22.89 -107.50 -2.46 -0.33 15 19 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.08 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.28 7.67 8.31 -40.82 -0.34 7.33 15 23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.11 1.94 6.01 -51.93 -0.31 1.63 15 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -34.04 245.39 -5.00 -39.05 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -1.93 Total: -4.14 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 0.32 Total: -0.84 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.68 Total: -33.83 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.45 Total: -21.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.86 Total: 17.62 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.46 Total: -0.33 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -34.04 -5.00 -39.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306393855.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.392 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds