Wall clock time and date at job start Mon Mar 30 2020 03:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48496 * 109.47202 * 269.66783 * 3 2 1 5 5 H 1.48497 * 109.47174 * 29.67136 * 3 2 1 6 6 H 1.48501 * 109.47145 * 149.66815 * 3 2 1 7 7 C 1.40309 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00090 * 352.85351 * 7 2 1 9 9 C 1.40841 * 120.00051 * 172.85791 * 7 2 1 10 10 C 1.41291 * 120.70625 * 322.08050 * 9 7 2 11 11 C 1.36764 * 118.38877 * 180.26738 * 10 9 7 12 12 C 1.39235 * 119.77503 * 359.74575 * 11 10 9 13 13 Cl 1.73600 * 119.26536 * 179.97438 * 12 11 10 14 14 N 1.31685 * 121.47321 * 0.02562 * 12 11 10 15 15 C 1.32635 * 121.73232 * 359.97438 * 14 12 11 16 16 C 1.47613 * 119.97957 * 179.97438 * 15 14 12 17 17 O 1.21497 * 120.00363 * 177.36865 * 16 15 14 18 18 O 1.34780 * 120.00079 * 357.36576 * 16 15 14 19 19 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.80013 * 0.02562 * 10 9 7 21 21 H 1.08004 * 120.11100 * 179.77144 * 11 10 9 22 22 H 0.96699 * 117.00363 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 2.4946 2.0423 -1.4000 5 1 1.4341 2.6546 0.6931 6 1 3.5341 1.4422 0.7070 7 6 2.0076 -1.2151 -0.0005 8 1 1.4739 -2.1469 0.1154 9 6 3.4078 -1.2198 -0.1522 10 6 4.0415 -0.3118 -1.0298 11 6 5.4034 -0.3615 -1.1447 12 6 6.1267 -1.2897 -0.4004 13 17 7.8548 -1.3417 -0.5570 14 7 5.5291 -2.1297 0.4190 15 6 4.2121 -2.1331 0.5760 16 6 3.5825 -3.0922 1.5048 17 8 2.3813 -3.0641 1.6851 18 8 4.3401 -3.9993 2.1527 19 1 -0.4850 0.8400 0.0004 20 1 3.4640 0.4015 -1.5991 21 1 5.9162 0.3172 -1.8103 22 1 5.2909 -3.9829 1.9772 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306466868.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:13 Heat of formation + Delta-G solvation = -73.523103 kcal Electronic energy + Delta-G solvation = -13276.147915 eV Core-core repulsion = 10628.767294 eV Total energy + Delta-G solvation = -2647.380621 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 227.014 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.58845 -37.97200 -35.86434 -35.50464 -34.21658 -31.88732 -30.71642 -26.23911 -23.77966 -22.09340 -20.91344 -18.20946 -17.90053 -16.38026 -15.49954 -14.92048 -14.72214 -14.61715 -13.91237 -13.32704 -13.11102 -12.74962 -12.45301 -11.87883 -11.32939 -11.02759 -10.76554 -10.64849 -10.60394 -10.35695 -9.82469 -9.38959 -8.98170 -8.74836 -8.02915 -7.36987 -4.98295 1.55794 2.08448 2.71073 2.78347 2.90407 2.96938 3.43397 3.58963 4.18432 4.32043 4.92919 5.10434 5.64550 5.78236 5.99558 6.32099 6.52751 6.66310 7.04093 7.19351 7.91113 7.92830 8.12988 8.25276 8.59019 8.80243 9.57180 Molecular weight = 227.01amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.012862 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.398213 B = 2176.509740 C = 3150.031401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.241 1.241 7 C -0.358 4.358 8 H 0.125 0.875 9 C 0.062 3.938 10 C -0.173 4.173 11 C -0.090 4.090 12 C 0.049 3.951 13 Cl -0.081 7.081 14 N -0.418 5.418 15 C -0.086 4.086 16 C 0.552 3.448 17 O -0.461 6.461 18 O -0.523 6.523 19 H 0.297 0.703 20 H 0.126 0.874 21 H 0.122 0.878 22 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 2.417 -2.019 7.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.151 4.151 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.164 1.164 7 C -0.384 4.384 8 H 0.143 0.857 9 C 0.055 3.945 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.122 4.122 13 Cl -0.054 7.054 14 N -0.131 5.131 15 C -0.224 4.224 16 C 0.395 3.605 17 O -0.345 6.345 18 O -0.333 6.333 19 H 0.108 0.892 20 H 0.144 0.856 21 H 0.140 0.860 22 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.433 1.735 -1.203 6.771 hybrid contribution 0.636 1.442 -0.758 1.749 sum 7.069 3.177 -1.961 7.994 Atomic orbital electron populations 1.69506 1.08316 1.31573 1.28698 1.26510 0.95131 1.02136 0.91362 0.86335 0.81237 0.79048 0.80038 1.18508 1.20436 1.16441 1.20210 0.89875 0.96745 1.31530 0.85701 1.18258 0.94425 0.91369 0.90437 1.21345 0.93832 1.03318 1.01335 1.21105 0.94180 0.97255 0.98532 1.20421 0.84400 1.01830 1.05505 1.98282 1.11611 1.98334 1.97151 1.65948 1.11458 1.20646 1.15081 1.20688 0.87217 1.07905 1.06572 1.19685 0.85667 0.77730 0.77423 1.90855 1.12216 1.68678 1.62767 1.84394 1.25855 1.56072 1.67025 0.89160 0.85604 0.86019 0.73074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.41 13.92 55.57 0.77 -17.64 14 2 C 0.07 1.75 5.50 -17.29 -0.10 1.66 14 3 Si 0.91 18.24 24.51 -169.99 -4.17 14.07 14 4 H -0.26 -4.81 6.68 56.52 0.38 -4.43 14 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 14 6 H -0.24 -5.05 6.73 56.52 0.38 -4.67 14 7 C -0.36 -9.10 8.14 -37.82 -0.31 -9.41 14 8 H 0.13 3.50 6.28 -52.48 -0.33 3.17 14 9 C 0.06 1.47 5.04 -106.39 -0.54 0.94 14 10 C -0.17 -3.66 7.06 -38.96 -0.28 -3.94 14 11 C -0.09 -1.73 9.79 -39.74 -0.39 -2.12 14 12 C 0.05 0.99 7.28 -17.24 -0.13 0.86 14 13 Cl -0.08 -1.37 29.09 -51.86 -1.51 -2.88 14 14 N -0.42 -8.89 9.40 -6.36 -0.06 -8.95 14 15 C -0.09 -1.99 6.81 -82.33 -0.56 -2.55 14 16 C 0.55 12.85 8.36 34.56 0.29 13.14 14 17 O -0.46 -12.17 14.46 -19.26 -0.28 -12.45 14 18 O -0.52 -10.31 13.49 -40.71 -0.55 -10.86 14 19 H 0.30 6.35 8.29 -40.82 -0.34 6.01 14 20 H 0.13 2.49 4.99 -52.49 -0.26 2.23 14 21 H 0.12 1.95 8.06 -52.48 -0.42 1.52 14 22 H 0.41 6.46 8.23 45.56 0.38 6.84 14 LS Contribution 219.23 15.07 3.30 3.30 Total: -1.00 -26.83 219.23 -4.30 -31.13 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.18 Total: 5.67 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.00 Total: -1.42 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.71 Total: -26.59 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.83 Total: -23.30 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.17 Total: 14.07 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.51 Total: -2.88 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.83 -4.30 -31.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466868.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.391 kcal (2) G-P(sol) polarization free energy of solvation -26.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds