Wall clock time and date at job start Mon Mar 30 2020 03:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86801 * 119.99465 * 2 1 4 4 H 1.48497 * 109.47471 * 270.00275 * 3 2 1 5 5 H 1.48501 * 109.47439 * 30.00763 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00627 * 3 2 1 7 7 C 1.39163 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 359.97438 * 7 2 1 9 9 N 1.36692 * 120.00090 * 179.97438 * 7 2 1 10 10 C 1.34780 * 120.00052 * 179.97438 * 9 7 2 11 11 O 1.21551 * 120.00125 * 359.97438 * 10 9 7 12 12 C 1.48165 * 120.00038 * 180.02562 * 10 9 7 13 13 N 1.33225 * 120.56867 * 359.97438 * 12 10 9 14 14 C 1.31519 * 120.73248 * 179.97438 * 13 12 10 15 15 N 1.31930 * 121.96866 * 0.02562 * 14 13 12 16 16 C 1.32194 * 121.08247 * 359.97438 * 15 14 13 17 17 C 1.38898 * 119.13204 * 0.02562 * 16 15 14 18 18 Cl 1.73607 * 120.88613 * 179.97438 * 17 16 15 19 19 H 0.96996 * 120.00224 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99961 * 359.97438 * 9 7 2 21 21 H 1.07998 * 119.01332 * 180.02562 * 14 13 12 22 22 H 1.07996 * 120.43480 * 179.72380 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2467 1.6178 0.0000 4 1 2.4941 2.0466 -1.4000 5 1 1.4442 2.6527 0.7002 6 1 3.5444 1.4403 0.6999 7 6 2.0087 -1.2051 -0.0005 8 1 1.4688 -2.1405 -0.0005 9 7 3.3757 -1.2050 -0.0011 10 6 4.0496 -2.3722 -0.0011 11 8 3.4420 -3.4249 -0.0001 12 6 5.5313 -2.3721 -0.0011 13 7 6.2088 -1.2250 -0.0016 14 6 7.5239 -1.2211 -0.0011 15 7 8.2257 -2.3383 -0.0006 16 6 7.6301 -3.5184 0.0000 17 6 6.2423 -3.5754 -0.0005 18 17 5.4129 -5.1006 -0.0005 19 1 -0.4850 0.8400 0.0004 20 1 3.8606 -0.3650 -0.0014 21 1 8.0450 -0.2752 -0.0011 22 1 8.2148 -4.4264 -0.0041 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306853030.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:46 Heat of formation + Delta-G solvation = -3.103202 kcal Electronic energy + Delta-G solvation = -13021.429422 eV Core-core repulsion = 10409.395188 eV Total energy + Delta-G solvation = -2612.034234 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 227.020 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.22219 -40.02777 -37.67085 -36.20163 -35.03996 -33.82799 -32.79267 -28.04720 -25.91909 -25.23052 -21.96026 -20.91370 -19.19149 -18.53756 -17.22187 -17.04958 -16.54591 -16.44847 -15.48461 -15.16993 -14.79263 -14.72233 -14.28068 -13.24242 -13.06944 -12.55455 -12.44940 -12.35212 -12.05918 -12.00547 -11.61762 -11.04169 -10.44865 -10.33342 -10.11635 -8.58526 -6.11139 -0.74956 -0.29464 0.96497 1.29179 1.30884 1.41420 1.81702 2.13229 2.35631 2.61944 2.92870 3.06033 3.11030 3.47002 3.62625 4.15204 4.50292 5.09409 5.35811 5.54770 5.79324 6.37913 6.66309 6.78455 7.18571 7.72080 8.56280 Molecular weight = 227.02amu Principal moments of inertia in cm(-1) A = 0.035137 B = 0.009365 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.689009 B = 2988.996373 C = 3775.844199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.239 1.239 7 C -0.327 4.327 8 H 0.073 0.927 9 N -0.543 5.543 10 C 0.464 3.536 11 O -0.584 6.584 12 C 0.147 3.853 13 N -0.516 5.516 14 C 0.299 3.701 15 N -0.504 5.504 16 C 0.181 3.819 17 C -0.122 4.122 18 Cl -0.015 7.015 19 H 0.288 0.712 20 H 0.394 0.606 21 H 0.247 0.753 22 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.201 -0.326 0.009 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.201 4.201 3 Si 0.772 3.228 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.163 1.163 7 C -0.457 4.457 8 H 0.091 0.909 9 N -0.181 5.181 10 C 0.251 3.749 11 O -0.468 6.468 12 C 0.001 3.999 13 N -0.233 5.233 14 C 0.012 3.988 15 N -0.218 5.218 16 C 0.012 3.988 17 C -0.156 4.156 18 Cl 0.014 6.986 19 H 0.098 0.902 20 H 0.231 0.769 21 H 0.262 0.738 22 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 16.924 -0.159 0.009 16.924 hybrid contribution -0.778 -0.058 0.003 0.780 sum 16.146 -0.216 0.012 16.147 Atomic orbital electron populations 1.69688 1.07930 1.30141 1.46180 1.26101 0.96440 1.02504 0.95090 0.85527 0.79602 0.77182 0.80523 1.17688 1.18640 1.16270 1.19201 0.80622 0.95897 1.49977 0.90866 1.41932 1.06354 1.07689 1.62110 1.17681 0.85582 0.84616 0.86995 1.90720 1.68526 1.31108 1.56462 1.21589 0.94933 0.89340 0.94086 1.68555 1.12131 1.28188 1.14451 1.25873 0.85503 0.98823 0.88602 1.68597 1.40756 0.98709 1.13775 1.23907 0.88134 0.98534 0.88197 1.22982 0.95887 0.89715 1.06979 1.98414 1.78600 1.25488 1.96119 0.90209 0.76897 0.73756 0.76427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.86 13.95 21.70 0.30 -51.56 14 2 C 0.00 0.11 5.50 85.00 0.47 0.57 14 3 Si 0.95 38.55 27.74 68.60 1.90 40.45 14 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 14 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 6 H -0.24 -8.79 6.52 99.48 0.65 -8.14 14 7 C -0.33 -18.94 10.16 84.16 0.86 -18.08 14 8 H 0.07 4.91 7.38 -2.91 -0.02 4.89 14 9 N -0.54 -27.13 5.07 -309.39 -1.57 -28.70 14 10 C 0.46 22.57 7.77 86.88 0.67 23.25 14 11 O -0.58 -31.89 13.72 -3.88 -0.05 -31.95 14 12 C 0.15 5.60 6.79 41.94 0.28 5.88 14 13 N -0.52 -16.64 9.70 -189.16 -1.84 -18.48 14 14 C 0.30 6.98 12.27 180.93 2.22 9.20 14 15 N -0.50 -11.49 10.42 -200.00 -2.08 -13.58 14 16 C 0.18 4.15 11.14 84.80 0.94 5.09 14 17 C -0.12 -3.89 6.40 22.80 0.15 -3.75 14 18 Cl -0.02 -0.51 26.25 -2.72 -0.07 -0.58 14 19 H 0.29 14.96 8.31 -92.71 -0.77 14.19 14 20 H 0.39 17.51 5.14 -92.71 -0.48 17.03 14 21 H 0.25 3.33 8.06 -2.91 -0.02 3.31 14 22 H 0.22 3.10 8.06 -2.91 -0.02 3.08 14 Total: -1.00 -69.25 224.55 2.93 -66.32 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.75 Total: 15.91 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 5.59 Total: 22.17 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -5.19 Total: -112.32 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.07 Total: -0.58 kcal Total: -69.25 2.93 -66.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306853030.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.216 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds