Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47329 * 270.00433 * 3 2 1 5 5 H 1.48504 * 109.46858 * 30.00415 * 3 2 1 6 6 H 1.48500 * 109.47166 * 150.00229 * 3 2 1 7 7 C 1.38945 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00243 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00090 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00353 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99713 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00003 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.36232 * 117.00188 * 179.97438 * 13 12 10 15 15 C 1.38668 * 122.58400 * 179.97438 * 14 13 12 16 16 C 1.33433 * 114.88144 * 180.02562 * 15 14 13 17 17 S 1.75865 * 109.66167 * 359.75827 * 16 15 14 18 18 C 1.33630 * 122.58638 * 0.02643 * 14 13 12 19 19 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99401 * 359.97438 * 9 7 2 21 21 H 1.08997 * 109.47783 * 59.99584 * 12 10 9 22 22 H 1.09001 * 109.47298 * 299.99616 * 12 10 9 23 23 H 1.07996 * 122.55913 * 0.04163 * 15 14 13 24 24 H 1.08000 * 125.16852 * 180.02562 * 16 15 14 25 25 H 1.08002 * 125.19356 * 359.94691 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4209 -0.0001 12 6 5.5607 -2.3704 -0.0011 13 8 6.0371 -3.7177 -0.0017 14 6 7.3877 -3.8962 -0.0023 15 6 7.9749 -5.1523 -0.0024 16 6 9.3093 -5.1483 -0.0025 17 16 9.8959 -3.4904 -0.0095 18 6 8.2487 -2.8742 -0.0018 19 1 -0.4850 0.8400 0.0004 20 1 3.8648 -0.3632 -0.0014 21 1 5.9241 -1.8565 0.8888 22 1 5.9240 -1.8566 -0.8911 23 1 7.3965 -6.0643 -0.0026 24 1 9.9340 -6.0292 -0.0030 25 1 7.9747 -1.8295 -0.0018 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308223920.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = -29.996023 kcal Electronic energy + Delta-G solvation = -12872.473600 eV Core-core repulsion = 10364.857255 eV Total energy + Delta-G solvation = -2507.616344 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81107 -38.16702 -35.77019 -34.04322 -31.79130 -29.09690 -28.57557 -24.79954 -23.19258 -19.67634 -19.59322 -18.67531 -18.04726 -16.71732 -15.94780 -15.76007 -15.00797 -14.19934 -13.90027 -13.71854 -13.29155 -12.91395 -12.53741 -12.44959 -12.17867 -11.66894 -11.28975 -10.95973 -10.74319 -10.65832 -10.05048 -9.67432 -8.89226 -8.64325 -8.28783 -7.98279 -6.38661 -3.91509 0.92931 1.56719 1.92083 2.73464 2.96857 3.01462 3.09532 3.23831 3.56889 4.03413 4.59686 4.92019 5.10749 5.18503 5.21338 5.39636 5.52727 5.69398 5.82614 5.95896 6.19503 7.33714 7.52028 8.01970 8.49102 8.84841 9.30615 9.67417 10.73853 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.056215 B = 0.005513 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.970091 B = 5077.296700 C = 5560.121695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.450 3.550 11 O -0.555 6.555 12 C 0.051 3.949 13 O -0.272 6.272 14 C 0.121 3.879 15 C -0.137 4.137 16 C -0.189 4.189 17 S 0.100 5.900 18 C -0.330 4.330 19 H 0.275 0.725 20 H 0.372 0.628 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.152 0.848 24 H 0.171 0.829 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.409 -2.389 -0.032 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.235 3.765 11 O -0.436 6.436 12 C -0.028 4.028 13 O -0.185 6.185 14 C 0.065 3.935 15 C -0.169 4.169 16 C -0.325 4.325 17 S 0.360 5.640 18 C -0.465 4.465 19 H 0.086 0.914 20 H 0.205 0.795 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.169 0.831 24 H 0.188 0.812 25 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 20.015 -2.460 -0.041 20.166 hybrid contribution -0.731 1.081 0.024 1.306 sum 19.284 -1.378 -0.017 19.333 Atomic orbital electron populations 1.69614 1.05647 1.27712 1.48547 1.25035 0.95519 0.98027 0.97361 0.86667 0.79803 0.83912 0.79010 1.19451 1.19967 1.19448 1.19431 0.78734 0.96879 1.48577 0.86048 1.42026 1.07609 1.05647 1.66850 1.19187 0.86978 0.85083 0.85291 1.90609 1.69044 1.30789 1.53204 1.22484 0.95634 0.82454 1.02235 1.86259 1.16336 1.27638 1.88225 1.18032 0.84023 0.93089 0.98388 1.19544 0.93933 0.97381 1.06040 1.25466 0.97761 1.00694 1.08565 1.84010 1.06538 0.98613 1.74867 1.25330 0.96057 1.03059 1.22082 0.91410 0.79491 0.90406 0.90411 0.83062 0.81165 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.96 55.50 0.77 -24.49 15 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 15 3 Si 0.88 18.93 27.74 -169.99 -4.71 14.21 15 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.27 -5.23 6.52 56.52 0.37 -4.86 15 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 15 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 15 9 N -0.58 -13.79 5.09 -10.97 -0.06 -13.85 15 10 C 0.45 10.53 7.86 -10.99 -0.09 10.44 15 11 O -0.56 -15.68 16.07 -14.36 -0.23 -15.91 15 12 C 0.05 0.89 5.35 36.00 0.19 1.09 15 13 O -0.27 -5.10 9.74 -40.39 -0.39 -5.49 15 14 C 0.12 1.84 6.64 -41.04 -0.27 1.57 15 15 C -0.14 -1.76 10.17 -41.10 -0.42 -2.17 15 16 C -0.19 -1.93 11.22 29.05 0.33 -1.61 15 17 S 0.10 1.04 23.34 -107.50 -2.51 -1.47 15 18 C -0.33 -4.25 10.09 29.12 0.29 -3.95 15 19 H 0.28 7.30 8.31 -40.82 -0.34 6.96 15 20 H 0.37 7.57 5.76 -40.82 -0.24 7.33 15 21 H 0.08 1.15 7.86 -51.93 -0.41 0.74 15 22 H 0.08 1.14 7.86 -51.93 -0.41 0.73 15 23 H 0.15 1.79 8.06 -52.49 -0.42 1.36 15 24 H 0.17 1.19 8.06 -52.49 -0.42 0.77 15 25 H 0.17 1.89 7.02 -52.49 -0.37 1.52 15 LS Contribution 243.97 15.07 3.68 3.68 Total: -1.00 -32.90 243.97 -5.49 -38.39 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -1.82 Total: 7.29 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.21 Total: -2.36 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.72 Total: -38.34 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.62 Total: -21.40 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.21 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.90 -5.49 -38.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308223920.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.390 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds