Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34801 * 116.99461 * 90.00255 * 12 2 1 14 14 O 1.21556 * 120.00225 * 359.97438 * 13 12 2 15 15 C 1.47113 * 120.00042 * 180.02562 * 13 12 2 16 16 C 1.35286 * 123.15732 * 179.97438 * 15 13 12 17 17 S 1.70940 * 108.82078 * 180.02562 * 16 15 13 18 18 C 1.70768 * 91.13683 * 0.02562 * 17 16 15 19 19 N 1.28622 * 110.57883 * 359.72952 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 1.08003 * 125.59271 * 359.96729 * 16 15 13 25 25 H 1.08000 * 124.70499 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0671 -2.2857 14 8 1.9969 1.2620 -2.2551 15 6 2.7072 -0.5589 -3.5239 16 6 2.9333 0.1337 -4.6639 17 16 3.4908 -0.9476 -5.8647 18 6 3.3895 -2.2607 -4.7776 19 7 2.9738 -1.8639 -3.6269 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 2.7849 1.1955 -4.7942 25 1 3.6441 -3.2816 -5.0211 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308259676.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = -43.105023 kcal Electronic energy + Delta-G solvation = -13194.349978 eV Core-core repulsion = 10686.165185 eV Total energy + Delta-G solvation = -2508.184793 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.21065 -38.66628 -35.69930 -33.21197 -30.70937 -29.54489 -26.12773 -25.26938 -23.20342 -20.86309 -19.40132 -18.64883 -16.78533 -16.20035 -15.89006 -15.34563 -14.98777 -14.32185 -14.00977 -13.43134 -12.99364 -12.18794 -12.07516 -11.83113 -11.20871 -11.03086 -10.82962 -10.33741 -10.26450 -9.94312 -9.79391 -9.78216 -9.53219 -9.06503 -8.87668 -8.46334 -6.15435 -4.21653 0.48323 1.18391 1.51691 2.09498 3.27722 3.32623 3.37347 3.59623 3.62357 4.26253 4.42443 5.03996 5.17649 5.21096 5.49103 6.01144 6.64534 6.91505 6.92272 7.12776 7.44737 7.61811 7.73575 7.93113 8.15801 8.61524 8.90444 9.43264 10.92271 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.054351 B = 0.006212 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.041688 B = 4506.425697 C = 4815.877303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.212 3.788 3 H 0.048 0.952 4 C -0.518 4.518 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.331 6.331 13 C 0.530 3.470 14 O -0.512 6.512 15 C 0.036 3.964 16 C -0.223 4.223 17 S 0.192 5.808 18 C -0.003 4.003 19 N -0.415 5.415 20 H 0.016 0.984 21 H 0.101 0.899 22 H 0.038 0.962 23 H 0.266 0.734 24 H 0.192 0.808 25 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -3.910 -15.683 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.160 3.840 3 H 0.066 0.934 4 C -0.556 4.556 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.740 3.260 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.195 1.195 12 O -0.246 6.246 13 C 0.371 3.629 14 O -0.403 6.403 15 C -0.097 4.097 16 C -0.364 4.364 17 S 0.446 5.554 18 C -0.303 4.303 19 N -0.129 5.129 20 H 0.035 0.965 21 H 0.119 0.881 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.209 0.791 25 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.355 -3.771 -16.021 17.025 hybrid contribution -0.114 0.097 1.670 1.676 sum 4.240 -3.674 -14.352 15.409 Atomic orbital electron populations 1.22167 0.97384 1.00268 1.01420 1.20749 0.91562 0.93977 0.77724 0.93443 1.21034 1.32373 1.13493 0.88740 0.91161 1.24888 0.94937 0.95136 0.99047 1.69900 1.36135 1.22671 1.24152 0.86250 0.78494 0.79958 0.81296 1.20417 1.20954 1.19543 1.86686 1.74890 1.42462 1.20515 1.19772 0.74840 0.84589 0.83685 1.90816 1.49334 1.15597 1.84548 1.19846 1.06632 0.88679 0.94550 1.26645 1.05928 1.07161 0.96676 1.82768 1.57938 0.98833 1.15865 1.28596 1.04826 1.05125 0.91798 1.67051 1.10904 1.13101 1.21832 0.96519 0.88105 0.94292 0.92417 0.79124 0.77785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.16 0.35 -3.73 15 2 C 0.21 5.97 2.56 -27.88 -0.07 5.90 15 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 15 4 C -0.52 -15.12 8.90 -34.44 -0.31 -15.43 15 5 H 0.07 2.04 7.81 -52.49 -0.41 1.63 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 15 7 N -0.89 -25.78 11.32 55.43 0.63 -25.16 15 8 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 15 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 12 O -0.33 -8.62 9.80 -40.77 -0.40 -9.02 15 13 C 0.53 12.24 7.91 34.33 0.27 12.51 15 14 O -0.51 -12.57 15.97 -19.31 -0.31 -12.88 15 15 C 0.04 0.66 6.71 -84.55 -0.57 0.10 15 16 C -0.22 -3.06 10.62 29.68 0.32 -2.74 15 17 S 0.19 1.77 22.96 -107.50 -2.47 -0.70 15 18 C 0.00 -0.03 12.17 51.42 0.63 0.59 15 19 N -0.42 -7.07 10.59 -12.39 -0.13 -7.20 15 20 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 21 H 0.10 2.79 6.07 -51.93 -0.32 2.48 15 22 H 0.04 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 24 H 0.19 2.35 8.03 -52.48 -0.42 1.93 15 25 H 0.21 1.46 8.06 -52.49 -0.42 1.03 15 LS Contribution 246.74 15.07 3.72 3.72 Total: -1.00 -33.03 246.74 -5.38 -38.42 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -1.92 Total: -2.62 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.52 Total: -1.15 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.50 Total: -32.36 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.71 Total: -21.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.47 Total: -0.70 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.03 -5.38 -38.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308259676.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.687 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds