Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34801 * 116.99461 * 90.00255 * 12 2 1 14 14 O 1.21556 * 120.00225 * 359.97438 * 13 12 2 15 15 C 1.47113 * 120.00042 * 180.02562 * 13 12 2 16 16 C 1.35286 * 123.15732 * 179.97438 * 15 13 12 17 17 S 1.70940 * 108.82078 * 180.02562 * 16 15 13 18 18 C 1.70768 * 91.13683 * 0.02562 * 17 16 15 19 19 N 1.28622 * 110.57883 * 359.72952 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 1.08003 * 125.59271 * 359.96729 * 16 15 13 25 25 H 1.08000 * 124.70499 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0671 -2.2857 14 8 1.9969 1.2620 -2.2551 15 6 2.7072 -0.5589 -3.5239 16 6 2.9333 0.1337 -4.6639 17 16 3.4908 -0.9476 -5.8647 18 6 3.3895 -2.2607 -4.7776 19 7 2.9738 -1.8639 -3.6269 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 2.7849 1.1955 -4.7942 25 1 3.6441 -3.2816 -5.0211 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308259676.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = -66.311205 kcal Electronic energy + Delta-G solvation = -13195.356274 eV Core-core repulsion = 10686.165185 eV Total energy + Delta-G solvation = -2509.191089 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.68221 -40.18182 -37.63673 -35.35767 -32.05122 -31.49366 -27.57033 -27.28437 -24.64488 -22.76521 -20.84492 -20.00235 -18.76877 -17.95337 -17.32405 -17.03098 -16.70484 -15.90382 -15.37161 -14.90352 -14.36924 -14.23406 -13.91998 -13.27191 -13.14328 -12.92644 -12.85031 -12.42102 -12.17743 -11.74191 -11.64777 -11.04463 -10.80473 -10.78828 -10.63522 -10.02686 -8.31632 -6.48766 -0.59313 0.26698 0.55015 0.77927 1.39944 1.42669 1.54612 2.00673 2.08930 2.40088 2.98600 3.20779 3.89756 4.06935 4.32378 4.46708 4.72286 4.74131 4.82922 5.08450 5.43075 5.55658 5.80514 5.98814 6.40280 6.57799 6.88749 7.22322 8.76622 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.054351 B = 0.006212 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.041688 B = 4506.425697 C = 4815.877303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.213 3.787 3 H 0.011 0.989 4 C -0.551 4.551 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.987 3.013 9 H -0.270 1.270 10 H -0.271 1.271 11 H -0.265 1.265 12 O -0.347 6.347 13 C 0.522 3.478 14 O -0.543 6.543 15 C -0.009 4.009 16 C -0.229 4.229 17 S 0.336 5.664 18 C -0.008 4.008 19 N -0.471 5.471 20 H 0.024 0.976 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.273 0.727 24 H 0.199 0.801 25 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -5.237 -17.435 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.160 3.840 3 H 0.029 0.971 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.809 3.191 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.189 1.189 12 O -0.262 6.262 13 C 0.365 3.635 14 O -0.435 6.435 15 C -0.143 4.143 16 C -0.371 4.371 17 S 0.592 5.408 18 C -0.307 4.307 19 N -0.186 5.186 20 H 0.043 0.957 21 H 0.104 0.896 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.216 0.784 25 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.423 -5.105 -17.822 19.316 hybrid contribution -0.375 0.535 1.941 2.048 sum 5.048 -4.570 -15.881 17.279 Atomic orbital electron populations 1.21983 0.96473 1.00386 1.01000 1.20490 0.92310 0.92217 0.78973 0.97107 1.21260 1.33642 1.13946 0.89966 0.91854 1.25856 0.94603 0.95698 1.02085 1.70007 1.36374 1.23602 1.25381 0.85134 0.78262 0.78788 0.76914 1.19551 1.19574 1.18902 1.86668 1.75603 1.42895 1.21034 1.20687 0.73929 0.84534 0.84305 1.90765 1.50870 1.16722 1.85125 1.19345 1.11164 0.90252 0.93505 1.27049 1.04083 1.08738 0.97248 1.82317 1.53372 0.94219 1.10858 1.29277 1.02478 1.07907 0.91083 1.66978 1.13632 1.12783 1.25184 0.95739 0.89559 0.93734 0.91797 0.78396 0.73827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.73 9.33 71.98 0.67 -7.06 15 2 C 0.21 12.64 2.56 29.85 0.08 12.71 15 3 H 0.01 0.72 7.16 -2.39 -0.02 0.70 15 4 C -0.55 -33.26 8.90 25.60 0.23 -33.04 15 5 H 0.06 3.80 7.81 -2.91 -0.02 3.78 15 6 C 0.02 0.99 5.30 84.66 0.45 1.44 15 7 N -0.92 -54.07 11.32 21.45 0.24 -53.82 15 8 Si 0.99 44.42 29.54 68.60 2.03 46.45 15 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 11 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 12 O -0.35 -19.07 9.80 -57.13 -0.56 -19.63 15 13 C 0.52 25.35 7.91 70.15 0.56 25.91 15 14 O -0.54 -28.16 15.97 19.65 0.31 -27.85 15 15 C -0.01 -0.35 6.71 40.52 0.27 -0.07 15 16 C -0.23 -5.91 10.62 67.14 0.71 -5.19 15 17 S 0.34 4.70 22.96 -56.49 -1.30 3.40 15 18 C -0.01 -0.16 12.17 130.71 1.59 1.43 15 19 N -0.47 -15.76 10.59 -193.11 -2.05 -17.80 15 20 H 0.02 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.09 4.97 6.07 -2.39 -0.01 4.95 15 22 H 0.04 2.32 8.14 -2.38 -0.02 2.30 15 23 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 24 H 0.20 4.64 8.03 -2.91 -0.02 4.61 15 25 H 0.25 2.38 8.06 -2.91 -0.02 2.35 15 Total: -1.00 -76.33 246.74 4.45 -71.88 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.21 Total: 1.24 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 4.56 Total: -3.87 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.80 Total: -71.63 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.25 Total: -47.47 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.30 Total: 3.40 kcal Total: -76.33 4.45 -71.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308259676.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.570 kcal (2) G-P(sol) polarization free energy of solvation -76.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds