Wall clock time and date at job start Mon Mar 30 2020 03:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34817 * 116.99862 * 269.99891 * 12 2 1 14 14 O 1.21540 * 120.00164 * 0.02562 * 13 12 2 15 15 C 1.47107 * 119.99747 * 179.97438 * 13 12 2 16 16 N 1.30610 * 125.54366 * 359.69729 * 15 13 12 17 17 C 1.30641 * 115.91029 * 179.84228 * 16 15 13 18 18 C 1.34302 * 115.78514 * 0.45006 * 17 16 15 19 19 S 1.71081 * 109.08513 * 359.75652 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.08005 * 122.10984 * 180.20332 * 17 16 15 25 25 H 1.07997 * 125.45724 * 179.75903 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 8 2.0140 -0.6845 1.1856 13 6 2.2180 0.0673 2.2859 14 8 1.9970 1.2620 2.2552 15 6 2.7072 -0.5586 3.5241 16 7 2.9727 -1.8280 3.6796 17 6 3.4013 -2.1809 4.8621 18 6 3.5035 -1.1923 5.7654 19 16 3.0229 0.2805 5.0397 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 3.6536 -3.2038 5.0996 25 1 3.8360 -1.3085 6.7864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308280304.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:46 Heat of formation + Delta-G solvation = -39.138391 kcal Electronic energy + Delta-G solvation = -13144.022156 eV Core-core repulsion = 10636.009369 eV Total energy + Delta-G solvation = -2508.012787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.95214 -39.02014 -35.79728 -33.27061 -30.81014 -29.45827 -26.45908 -25.30977 -22.73905 -20.98042 -19.51682 -18.29502 -16.93953 -16.53627 -15.73272 -15.41941 -14.86894 -14.38740 -13.99711 -13.50828 -13.00372 -12.23423 -11.93909 -11.58179 -11.25734 -11.08294 -10.83685 -10.40124 -10.32827 -10.20162 -9.77054 -9.73400 -9.59221 -8.98439 -8.92354 -8.49254 -6.18210 -4.24734 0.20951 1.05750 1.63188 2.40713 3.26848 3.31412 3.35000 3.38625 3.49516 4.29577 4.52820 4.96316 5.15057 5.24886 5.48294 6.01809 6.58339 6.86225 6.88057 7.04246 7.47269 7.58946 7.69226 7.87714 8.10973 8.49916 8.85314 9.40246 10.89415 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.006455 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.134639 B = 4336.752188 C = 4644.162957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H 0.050 0.950 4 C -0.520 4.520 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.324 6.324 13 C 0.537 3.463 14 O -0.505 6.505 15 C 0.010 3.990 16 N -0.401 5.401 17 C 0.027 3.973 18 C -0.285 4.285 19 S 0.241 5.759 20 H 0.102 0.898 21 H 0.017 0.983 22 H 0.039 0.961 23 H 0.267 0.733 24 H 0.179 0.821 25 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -2.639 14.564 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.558 4.558 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.741 3.259 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.239 6.239 13 C 0.376 3.624 14 O -0.394 6.394 15 C -0.263 4.263 16 N -0.119 5.119 17 C -0.131 4.131 18 C -0.426 4.426 19 S 0.495 5.505 20 H 0.120 0.880 21 H 0.036 0.964 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.196 0.804 25 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.408 -1.447 14.199 14.674 hybrid contribution 0.480 -1.341 -0.487 1.505 sum 3.888 -2.788 13.712 14.523 Atomic orbital electron populations 1.22185 0.97213 1.00397 1.01551 1.20840 0.91668 0.94078 0.77362 0.93202 1.21023 1.32559 1.13573 0.88619 0.91073 1.24883 0.94924 0.95091 0.99039 1.69897 1.36122 1.22519 1.24238 0.86233 0.79363 0.79092 0.81227 1.20319 1.20972 1.19566 1.86703 1.74682 1.42315 1.20171 1.19400 0.75091 0.84532 0.83367 1.90858 1.49026 1.15197 1.84338 1.26952 1.08905 0.92285 0.98151 1.66911 1.09606 1.13650 1.21704 1.21857 1.02074 1.01829 0.87297 1.26959 1.10692 0.98102 1.06809 1.83978 1.54907 1.08571 1.03024 0.87982 0.96405 0.94191 0.92357 0.80450 0.79845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.33 37.16 0.35 -3.66 15 2 C 0.21 5.84 2.56 -27.88 -0.07 5.77 15 3 H 0.05 1.47 7.16 -51.93 -0.37 1.10 15 4 C -0.52 -14.87 8.90 -34.44 -0.31 -15.17 15 5 H 0.07 2.03 7.81 -52.48 -0.41 1.62 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 15 7 N -0.89 -25.33 11.32 55.43 0.63 -24.71 15 8 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 15 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 12 O -0.32 -8.22 9.86 -40.81 -0.40 -8.62 15 13 C 0.54 12.03 7.93 34.33 0.27 12.30 15 14 O -0.50 -11.96 16.20 -19.29 -0.31 -12.27 15 15 C 0.01 0.19 7.47 -14.47 -0.11 0.08 15 16 N -0.40 -6.94 10.62 -11.53 -0.12 -7.07 15 17 C 0.03 0.34 11.24 -19.45 -0.22 0.12 15 18 C -0.28 -2.89 11.09 29.34 0.33 -2.57 15 19 S 0.24 3.06 23.03 -107.50 -2.48 0.59 15 20 H 0.10 2.77 6.07 -51.93 -0.32 2.45 15 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.04 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.18 1.62 8.06 -52.48 -0.42 1.20 15 25 H 0.18 1.13 8.06 -52.49 -0.42 0.71 15 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -31.29 247.46 -5.76 -37.04 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -1.92 Total: -3.50 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 0.14 Total: -1.48 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.50 Total: -31.77 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.71 Total: -20.90 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.48 Total: 0.59 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.29 -5.76 -37.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308280304.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.098 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds