Wall clock time and date at job start Mon Mar 30 2020 03:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 O 1.45206 * 109.47147 * 119.99956 * 2 1 3 13 13 C 1.34817 * 116.99862 * 269.99891 * 12 2 1 14 14 O 1.21540 * 120.00164 * 0.02562 * 13 12 2 15 15 C 1.47107 * 119.99747 * 179.97438 * 13 12 2 16 16 N 1.30610 * 125.54366 * 359.69729 * 15 13 12 17 17 C 1.30641 * 115.91029 * 179.84228 * 16 15 13 18 18 C 1.34302 * 115.78514 * 0.45006 * 17 16 15 19 19 S 1.71081 * 109.08513 * 359.75652 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.08005 * 122.10984 * 180.20332 * 17 16 15 25 25 H 1.07997 * 125.45724 * 179.75903 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 8 2.0140 -0.6845 1.1856 13 6 2.2180 0.0673 2.2859 14 8 1.9970 1.2620 2.2552 15 6 2.7072 -0.5586 3.5241 16 7 2.9727 -1.8280 3.6796 17 6 3.4013 -2.1809 4.8621 18 6 3.5035 -1.1923 5.7654 19 16 3.0229 0.2805 5.0397 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 3.6536 -3.2038 5.0996 25 1 3.8360 -1.3085 6.7864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308280304.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:46 Heat of formation + Delta-G solvation = -60.351539 kcal Electronic energy + Delta-G solvation = -13144.942027 eV Core-core repulsion = 10636.009369 eV Total energy + Delta-G solvation = -2508.932658 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.46332 -40.41476 -37.69266 -35.36619 -32.20044 -31.26575 -27.75144 -27.45444 -24.30193 -22.64856 -21.05450 -19.58297 -18.62759 -18.36183 -17.45207 -17.09168 -16.52905 -15.78956 -15.32854 -14.89381 -14.52355 -14.19207 -13.93278 -13.25564 -13.04720 -12.82255 -12.53522 -12.43177 -12.18470 -11.94081 -11.65568 -11.06980 -10.96171 -10.76737 -10.62041 -10.03470 -8.30720 -6.47649 -0.95082 -0.06993 0.64163 1.11842 1.41539 1.44046 1.55315 1.94115 1.99261 2.39075 2.99708 3.21691 3.99122 4.27210 4.34684 4.47116 4.75067 4.76666 5.01036 5.08988 5.43073 5.56125 5.78623 5.98028 6.40095 6.57883 6.81667 7.22978 8.77328 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.006455 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.134639 B = 4336.752188 C = 4644.162957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.214 3.786 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.274 1.274 11 H -0.268 1.268 12 O -0.342 6.342 13 C 0.532 3.468 14 O -0.533 6.533 15 C -0.064 4.064 16 N -0.427 5.427 17 C 0.005 3.995 18 C -0.235 4.235 19 S 0.301 5.699 20 H 0.087 0.913 21 H 0.026 0.974 22 H 0.044 0.956 23 H 0.273 0.727 24 H 0.212 0.788 25 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -3.748 16.440 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.588 4.588 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.808 3.192 9 H -0.191 1.191 10 H -0.199 1.199 11 H -0.192 1.192 12 O -0.257 6.257 13 C 0.375 3.625 14 O -0.424 6.424 15 C -0.332 4.332 16 N -0.147 5.147 17 C -0.152 4.152 18 C -0.376 4.376 19 S 0.554 5.446 20 H 0.105 0.895 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.229 0.771 25 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.414 -2.549 16.079 16.868 hybrid contribution 0.237 -0.980 -0.793 1.283 sum 4.651 -3.530 15.287 16.364 Atomic orbital electron populations 1.22003 0.96330 1.00484 1.01186 1.20563 0.92390 0.92396 0.78550 0.96620 1.21252 1.33710 1.13984 0.89900 0.91813 1.25820 0.94631 0.95654 1.01988 1.70003 1.36398 1.23441 1.25390 0.85149 0.78939 0.78151 0.76957 1.19114 1.19879 1.19208 1.86670 1.75466 1.42780 1.20797 1.20096 0.74153 0.84425 0.83851 1.90808 1.50492 1.16184 1.84932 1.26250 1.14490 0.93831 0.98665 1.66837 1.09431 1.13856 1.24573 1.22371 1.02625 1.03969 0.86223 1.27679 1.05729 0.95918 1.08235 1.83778 1.52770 1.08796 0.99287 0.89485 0.95474 0.93717 0.91788 0.77144 0.74526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.62 9.33 71.98 0.67 -6.95 15 2 C 0.21 12.37 2.56 29.85 0.08 12.45 15 3 H 0.02 1.01 7.16 -2.39 -0.02 0.99 15 4 C -0.55 -32.65 8.90 25.60 0.23 -32.43 15 5 H 0.06 3.76 7.81 -2.91 -0.02 3.74 15 6 C 0.02 1.07 5.30 84.65 0.45 1.52 15 7 N -0.91 -53.12 11.32 21.45 0.24 -52.87 15 8 Si 0.99 43.87 29.54 68.60 2.03 45.90 15 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 12 O -0.34 -18.30 9.86 -57.29 -0.56 -18.87 15 13 C 0.53 25.05 7.93 70.15 0.56 25.60 15 14 O -0.53 -26.61 16.20 19.70 0.32 -26.29 15 15 C -0.06 -2.32 7.47 87.20 0.65 -1.67 15 16 N -0.43 -14.52 10.62 -190.41 -2.02 -16.54 15 17 C 0.01 0.11 11.24 83.97 0.94 1.06 15 18 C -0.23 -3.59 11.09 66.92 0.74 -2.85 15 19 S 0.30 6.89 23.03 -56.49 -1.30 5.59 15 20 H 0.09 4.90 6.07 -2.39 -0.01 4.88 15 21 H 0.03 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.04 2.27 8.14 -2.38 -0.02 2.25 15 23 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 24 H 0.21 2.96 8.06 -2.91 -0.02 2.94 15 25 H 0.24 1.08 8.06 -2.91 -0.02 1.06 15 Total: -1.00 -72.04 247.46 4.23 -67.81 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: 1.21 Total: -1.47 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.32 Total: -3.26 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.78 Total: -69.41 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.25 Total: -45.16 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.30 Total: 5.59 kcal Total: -72.04 4.23 -67.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308280304.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.458 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds