Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46891 * 111.00135 * 2 1 4 4 C 1.46901 * 110.99983 * 123.96012 * 2 1 3 5 5 C 1.52997 * 109.47679 * 58.47706 * 4 2 1 6 6 N 1.46504 * 109.46805 * 54.91103 * 5 4 2 7 7 C 1.36932 * 120.00066 * 175.09063 * 6 5 4 8 8 H 1.08000 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.38819 * 120.00178 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00079 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99782 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46788 * 90.00086 * 11 9 7 13 13 H 1.48501 * 109.47168 * 210.00234 * 11 9 7 14 14 H 1.48503 * 109.47106 * 330.00410 * 11 9 7 15 15 C 1.53004 * 109.46797 * 298.47874 * 4 2 1 16 16 C 1.52998 * 109.47144 * 179.97438 * 15 4 2 17 17 C 1.53006 * 109.46890 * 60.00387 * 16 15 4 18 18 C 1.53004 * 109.46911 * 299.99756 * 17 16 15 19 19 C 1.52997 * 109.47357 * 178.48253 * 4 2 1 20 20 H 1.08997 * 109.46590 * 298.32969 * 1 2 3 21 21 H 1.09000 * 109.46777 * 58.32711 * 1 2 3 22 22 H 1.08996 * 109.47173 * 178.33385 * 1 2 3 23 23 H 1.09010 * 109.47086 * 183.95124 * 3 2 1 24 24 H 1.08997 * 109.47207 * 303.95451 * 3 2 1 25 25 H 1.09004 * 109.47281 * 63.96192 * 3 2 1 26 26 H 1.09000 * 109.47500 * 174.91125 * 5 4 2 27 27 H 1.09002 * 109.47463 * 294.91818 * 5 4 2 28 28 H 0.97000 * 119.99704 * 355.08887 * 6 5 4 29 29 H 0.96996 * 119.99655 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.47160 * 300.00269 * 15 4 2 31 31 H 1.09007 * 109.46771 * 60.00292 * 15 4 2 32 32 H 1.08995 * 109.47451 * 300.00262 * 16 15 4 33 33 H 1.09003 * 109.47550 * 179.97438 * 16 15 4 34 34 H 1.09000 * 109.46899 * 180.02562 * 17 16 15 35 35 H 1.08995 * 109.47176 * 59.99706 * 17 16 15 36 36 H 1.08995 * 109.47160 * 299.99960 * 18 17 16 37 37 H 1.08997 * 109.46696 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47265 * 299.99758 * 19 4 2 39 39 H 1.09002 * 109.46934 * 59.99791 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.4742 -2.2030 1.0698 6 7 1.8099 -2.7833 -0.2328 7 6 1.5321 -4.0996 -0.4880 8 1 1.0652 -4.7100 0.2709 9 6 1.8506 -4.6496 -1.7221 10 7 1.5831 -5.9148 -1.9676 11 14 2.6575 -3.5938 -3.0350 12 1 4.1338 -3.6742 -2.8965 13 1 2.2588 -4.0843 -4.3788 14 1 2.2212 -2.1835 -2.8733 15 6 1.5361 -0.1180 2.4452 16 6 2.0838 -0.9162 3.6299 17 6 3.6128 -0.9258 3.5752 18 6 4.0723 -1.5739 2.2675 19 6 3.5245 -0.7751 1.0825 20 1 -0.3632 0.4877 0.9046 21 1 -0.3633 0.5396 -0.8746 22 1 -0.3633 -1.0272 -0.0299 23 1 3.0829 1.3431 -0.0708 24 1 1.5899 1.9162 -0.8524 25 1 1.7046 1.8722 0.9234 26 1 1.9354 -2.7945 1.8608 27 1 0.3920 -2.2034 1.1997 28 1 2.2288 -2.2350 -0.9145 29 1 1.8053 -6.2990 -2.8300 30 1 1.9074 0.9056 2.4934 31 1 0.4467 -0.1116 2.4843 32 1 1.7121 -1.9397 3.5815 33 1 1.7569 -0.4543 4.5616 34 1 4.0030 -1.4948 4.4190 35 1 3.9845 0.0977 3.6236 36 1 3.7006 -2.5973 2.2191 37 1 5.1615 -1.5810 2.2288 38 1 3.8518 -1.2368 0.1510 39 1 3.8958 0.2486 1.1309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308580768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = 13.959574 kcal Electronic energy + Delta-G solvation = -17290.502933 eV Core-core repulsion = 14847.257721 eV Total energy + Delta-G solvation = -2443.245212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97809 -35.47367 -34.16827 -31.27798 -30.63921 -29.31731 -27.62237 -25.23660 -23.81998 -22.49735 -21.70072 -20.73641 -18.11567 -17.10105 -16.19334 -14.80010 -14.70421 -14.56832 -14.25171 -13.92830 -13.55870 -13.13685 -12.84721 -12.44311 -12.42929 -12.04703 -11.88935 -11.67393 -11.46427 -11.32157 -11.09799 -10.81445 -10.61343 -10.49059 -10.19077 -10.04859 -9.92366 -9.60752 -9.46034 -8.73645 -7.87306 -7.03076 -5.64859 -2.96753 3.49396 3.56208 3.59784 4.20543 4.73412 4.88519 4.91225 5.11051 5.31400 5.36704 5.46547 5.48425 5.56895 5.60134 5.67765 5.73433 5.75261 5.82473 5.90205 5.93174 6.02709 6.05223 6.18649 6.24642 6.27039 6.34926 6.37073 6.41738 6.57107 6.65379 6.79101 6.85460 7.43546 7.47236 8.14378 8.55767 9.39222 10.12084 10.35940 11.54026 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.009958 C = 0.008873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.018198 B = 2811.130320 C = 3154.864505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.528 5.528 3 C 0.019 3.981 4 C 0.104 3.896 5 C 0.169 3.831 6 N -0.744 5.744 7 C -0.236 4.236 8 H 0.086 0.914 9 C 0.002 3.998 10 N -0.939 5.939 11 Si 0.878 3.122 12 H -0.287 1.287 13 H -0.295 1.295 14 H -0.268 1.268 15 C -0.142 4.142 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.101 4.101 20 H 0.020 0.980 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.038 0.962 27 H 0.017 0.983 28 H 0.370 0.630 29 H 0.257 0.743 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 14.862 9.295 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.251 5.251 3 C -0.129 4.129 4 C 0.014 3.986 5 C 0.042 3.958 6 N -0.390 5.390 7 C -0.366 4.366 8 H 0.104 0.896 9 C -0.193 4.193 10 N -0.588 5.588 11 Si 0.709 3.291 12 H -0.214 1.214 13 H -0.222 1.222 14 H -0.193 1.193 15 C -0.182 4.182 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.139 4.139 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.205 0.795 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.085 14.413 8.864 17.048 hybrid contribution 0.217 1.092 -0.339 1.164 sum 2.302 15.505 8.525 17.843 Atomic orbital electron populations 1.22436 0.87511 1.03319 0.99277 1.62073 1.07990 1.12513 1.42503 1.22453 1.00910 0.89761 0.99773 1.21347 0.95092 0.94897 0.87238 1.20753 0.96468 0.89117 0.89505 1.42611 1.74717 1.09531 1.12182 1.19071 1.33039 0.85380 0.99153 0.89644 1.24618 1.01452 0.95755 0.97460 1.69711 1.53799 1.11853 1.23447 0.86592 0.79532 0.80946 0.82053 1.21359 1.22151 1.19341 1.22141 1.00633 0.99404 0.96018 1.21518 0.95768 1.01077 0.97139 1.21524 0.95696 1.00307 0.97836 1.21600 0.99796 1.00827 0.93749 1.21530 0.93637 0.99420 0.99330 0.96123 0.92200 0.89890 0.91400 0.92043 0.95871 0.94439 0.96527 0.79531 0.93307 0.92220 0.91938 0.91123 0.92674 0.92347 0.92730 0.90386 0.92360 0.90818 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.81 60.07 0.53 0.88 16 2 N -0.53 -8.62 4.21 -235.41 -0.99 -9.61 16 3 C 0.02 0.26 8.81 60.06 0.53 0.78 16 4 C 0.10 1.67 0.11 -131.60 -0.01 1.65 16 5 C 0.17 3.36 3.87 -4.04 -0.02 3.34 16 6 N -0.74 -18.09 4.93 -59.91 -0.30 -18.39 16 7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 10 N -0.94 -30.21 13.97 55.49 0.78 -29.43 16 11 Si 0.88 22.98 27.74 -169.99 -4.71 18.26 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 14 H -0.27 -6.76 6.52 56.52 0.37 -6.39 16 15 C -0.14 -1.90 4.04 -26.73 -0.11 -2.01 16 16 C -0.12 -1.46 5.65 -26.73 -0.15 -1.61 16 17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 18 C -0.12 -1.74 5.65 -26.70 -0.15 -1.90 16 19 C -0.10 -1.58 4.30 -26.71 -0.11 -1.69 16 20 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.08 1.48 6.26 -51.93 -0.33 1.16 16 23 H 0.07 0.87 6.26 -51.92 -0.32 0.54 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.28 6.36 -51.93 -0.33 -0.05 16 26 H 0.04 0.76 4.82 -51.93 -0.25 0.51 16 27 H 0.02 0.35 6.62 -51.93 -0.34 0.00 16 28 H 0.37 9.09 4.47 -40.82 -0.18 8.91 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.06 0.75 6.45 -51.93 -0.34 0.41 16 31 H 0.06 0.84 6.49 -51.93 -0.34 0.50 16 32 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.29 6.32 -51.93 -0.33 0.96 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.34 7.30 -51.93 -0.38 0.96 16 39 H 0.05 0.74 6.36 -51.93 -0.33 0.41 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -31.37 280.65 -7.17 -38.54 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.27 Total: 5.50 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.51 Total: -57.43 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.26 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.37 -7.17 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308580768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.500 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds