Wall clock time and date at job start Mon Mar 30 2020 03:23:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46891 * 111.00135 * 2 1
4 4 C 1.46901 * 110.99983 * 123.96012 * 2 1 3
5 5 C 1.52997 * 109.47679 * 58.47706 * 4 2 1
6 6 N 1.46504 * 109.46805 * 54.91103 * 5 4 2
7 7 C 1.36932 * 120.00066 * 175.09063 * 6 5 4
8 8 H 1.08000 * 120.00117 * 0.02562 * 7 6 5
9 9 C 1.38819 * 120.00178 * 180.02562 * 7 6 5
10 10 N 1.31619 * 120.00079 * 180.02562 * 9 7 6
11 11 Si 1.86801 * 119.99782 * 359.97438 * 9 7 6
12 12 H 1.48501 * 109.46788 * 90.00086 * 11 9 7
13 13 H 1.48501 * 109.47168 * 210.00234 * 11 9 7
14 14 H 1.48503 * 109.47106 * 330.00410 * 11 9 7
15 15 C 1.53004 * 109.46797 * 298.47874 * 4 2 1
16 16 C 1.52998 * 109.47144 * 179.97438 * 15 4 2
17 17 C 1.53006 * 109.46890 * 60.00387 * 16 15 4
18 18 C 1.53004 * 109.46911 * 299.99756 * 17 16 15
19 19 C 1.52997 * 109.47357 * 178.48253 * 4 2 1
20 20 H 1.08997 * 109.46590 * 298.32969 * 1 2 3
21 21 H 1.09000 * 109.46777 * 58.32711 * 1 2 3
22 22 H 1.08996 * 109.47173 * 178.33385 * 1 2 3
23 23 H 1.09010 * 109.47086 * 183.95124 * 3 2 1
24 24 H 1.08997 * 109.47207 * 303.95451 * 3 2 1
25 25 H 1.09004 * 109.47281 * 63.96192 * 3 2 1
26 26 H 1.09000 * 109.47500 * 174.91125 * 5 4 2
27 27 H 1.09002 * 109.47463 * 294.91818 * 5 4 2
28 28 H 0.97000 * 119.99704 * 355.08887 * 6 5 4
29 29 H 0.96996 * 119.99655 * 179.97438 * 10 9 7
30 30 H 1.08995 * 109.47160 * 300.00269 * 15 4 2
31 31 H 1.09007 * 109.46771 * 60.00292 * 15 4 2
32 32 H 1.08995 * 109.47451 * 300.00262 * 16 15 4
33 33 H 1.09003 * 109.47550 * 179.97438 * 16 15 4
34 34 H 1.09000 * 109.46899 * 180.02562 * 17 16 15
35 35 H 1.08995 * 109.47176 * 59.99706 * 17 16 15
36 36 H 1.08995 * 109.47160 * 299.99960 * 18 17 16
37 37 H 1.08997 * 109.46696 * 180.02562 * 18 17 16
38 38 H 1.08997 * 109.47265 * 299.99758 * 19 4 2
39 39 H 1.09002 * 109.46934 * 59.99791 * 19 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.9955 -0.7661 1.1375
5 6 1.4742 -2.2030 1.0698
6 7 1.8099 -2.7833 -0.2328
7 6 1.5321 -4.0996 -0.4880
8 1 1.0652 -4.7100 0.2709
9 6 1.8506 -4.6496 -1.7221
10 7 1.5831 -5.9148 -1.9676
11 14 2.6575 -3.5938 -3.0350
12 1 4.1338 -3.6742 -2.8965
13 1 2.2588 -4.0843 -4.3788
14 1 2.2212 -2.1835 -2.8733
15 6 1.5361 -0.1180 2.4452
16 6 2.0838 -0.9162 3.6299
17 6 3.6128 -0.9258 3.5752
18 6 4.0723 -1.5739 2.2675
19 6 3.5245 -0.7751 1.0825
20 1 -0.3632 0.4877 0.9046
21 1 -0.3633 0.5396 -0.8746
22 1 -0.3633 -1.0272 -0.0299
23 1 3.0829 1.3431 -0.0708
24 1 1.5899 1.9162 -0.8524
25 1 1.7046 1.8722 0.9234
26 1 1.9354 -2.7945 1.8608
27 1 0.3920 -2.2034 1.1997
28 1 2.2288 -2.2350 -0.9145
29 1 1.8053 -6.2990 -2.8300
30 1 1.9074 0.9056 2.4934
31 1 0.4467 -0.1116 2.4843
32 1 1.7121 -1.9397 3.5815
33 1 1.7569 -0.4543 4.5616
34 1 4.0030 -1.4948 4.4190
35 1 3.9845 0.0977 3.6236
36 1 3.7006 -2.5973 2.2191
37 1 5.1615 -1.5810 2.2288
38 1 3.8518 -1.2368 0.1510
39 1 3.8958 0.2486 1.1309
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308580768.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:22
Heat of formation + Delta-G solvation = 13.959574 kcal
Electronic energy + Delta-G solvation = -17290.502933 eV
Core-core repulsion = 14847.257721 eV
Total energy + Delta-G solvation = -2443.245212 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.97809 -35.47367 -34.16827 -31.27798 -30.63921 -29.31731 -27.62237 -25.23660
-23.81998 -22.49735 -21.70072 -20.73641 -18.11567 -17.10105 -16.19334 -14.80010
-14.70421 -14.56832 -14.25171 -13.92830 -13.55870 -13.13685 -12.84721 -12.44311
-12.42929 -12.04703 -11.88935 -11.67393 -11.46427 -11.32157 -11.09799 -10.81445
-10.61343 -10.49059 -10.19077 -10.04859 -9.92366 -9.60752 -9.46034 -8.73645
-7.87306 -7.03076 -5.64859 -2.96753 3.49396 3.56208 3.59784 4.20543
4.73412 4.88519 4.91225 5.11051 5.31400 5.36704 5.46547 5.48425
5.56895 5.60134 5.67765 5.73433 5.75261 5.82473 5.90205 5.93174
6.02709 6.05223 6.18649 6.24642 6.27039 6.34926 6.37073 6.41738
6.57107 6.65379 6.79101 6.85460 7.43546 7.47236 8.14378 8.55767
9.39222 10.12084 10.35940 11.54026
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.027444 B = 0.009958 C = 0.008873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.018198 B = 2811.130320 C = 3154.864505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.528 5.528
3 C 0.019 3.981
4 C 0.104 3.896
5 C 0.169 3.831
6 N -0.744 5.744
7 C -0.236 4.236
8 H 0.086 0.914
9 C 0.002 3.998
10 N -0.939 5.939
11 Si 0.878 3.122
12 H -0.287 1.287
13 H -0.295 1.295
14 H -0.268 1.268
15 C -0.142 4.142
16 C -0.117 4.117
17 C -0.116 4.116
18 C -0.122 4.122
19 C -0.101 4.101
20 H 0.020 0.980
21 H 0.059 0.941
22 H 0.082 0.918
23 H 0.067 0.933
24 H 0.061 0.939
25 H 0.023 0.977
26 H 0.038 0.962
27 H 0.017 0.983
28 H 0.370 0.630
29 H 0.257 0.743
30 H 0.059 0.941
31 H 0.062 0.938
32 H 0.070 0.930
33 H 0.055 0.945
34 H 0.058 0.942
35 H 0.054 0.946
36 H 0.078 0.922
37 H 0.058 0.942
38 H 0.073 0.927
39 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.016 14.862 9.295 17.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 N -0.251 5.251
3 C -0.129 4.129
4 C 0.014 3.986
5 C 0.042 3.958
6 N -0.390 5.390
7 C -0.366 4.366
8 H 0.104 0.896
9 C -0.193 4.193
10 N -0.588 5.588
11 Si 0.709 3.291
12 H -0.214 1.214
13 H -0.222 1.222
14 H -0.193 1.193
15 C -0.182 4.182
16 C -0.155 4.155
17 C -0.154 4.154
18 C -0.160 4.160
19 C -0.139 4.139
20 H 0.039 0.961
21 H 0.078 0.922
22 H 0.101 0.899
23 H 0.086 0.914
24 H 0.080 0.920
25 H 0.041 0.959
26 H 0.056 0.944
27 H 0.035 0.965
28 H 0.205 0.795
29 H 0.067 0.933
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.073 0.927
34 H 0.077 0.923
35 H 0.073 0.927
36 H 0.096 0.904
37 H 0.076 0.924
38 H 0.092 0.908
39 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 2.085 14.413 8.864 17.048
hybrid contribution 0.217 1.092 -0.339 1.164
sum 2.302 15.505 8.525 17.843
Atomic orbital electron populations
1.22436 0.87511 1.03319 0.99277 1.62073 1.07990 1.12513 1.42503
1.22453 1.00910 0.89761 0.99773 1.21347 0.95092 0.94897 0.87238
1.20753 0.96468 0.89117 0.89505 1.42611 1.74717 1.09531 1.12182
1.19071 1.33039 0.85380 0.99153 0.89644 1.24618 1.01452 0.95755
0.97460 1.69711 1.53799 1.11853 1.23447 0.86592 0.79532 0.80946
0.82053 1.21359 1.22151 1.19341 1.22141 1.00633 0.99404 0.96018
1.21518 0.95768 1.01077 0.97139 1.21524 0.95696 1.00307 0.97836
1.21600 0.99796 1.00827 0.93749 1.21530 0.93637 0.99420 0.99330
0.96123 0.92200 0.89890 0.91400 0.92043 0.95871 0.94439 0.96527
0.79531 0.93307 0.92220 0.91938 0.91123 0.92674 0.92347 0.92730
0.90386 0.92360 0.90818 0.92790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.35 8.81 60.07 0.53 0.88 16
2 N -0.53 -8.62 4.21 -235.41 -0.99 -9.61 16
3 C 0.02 0.26 8.81 60.06 0.53 0.78 16
4 C 0.10 1.67 0.11 -131.60 -0.01 1.65 16
5 C 0.17 3.36 3.87 -4.04 -0.02 3.34 16
6 N -0.74 -18.09 4.93 -59.91 -0.30 -18.39 16
7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16
8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16
9 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16
10 N -0.94 -30.21 13.97 55.49 0.78 -29.43 16
11 Si 0.88 22.98 27.74 -169.99 -4.71 18.26 16
12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
13 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16
14 H -0.27 -6.76 6.52 56.52 0.37 -6.39 16
15 C -0.14 -1.90 4.04 -26.73 -0.11 -2.01 16
16 C -0.12 -1.46 5.65 -26.73 -0.15 -1.61 16
17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16
18 C -0.12 -1.74 5.65 -26.70 -0.15 -1.90 16
19 C -0.10 -1.58 4.30 -26.71 -0.11 -1.69 16
20 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16
21 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
22 H 0.08 1.48 6.26 -51.93 -0.33 1.16 16
23 H 0.07 0.87 6.26 -51.92 -0.32 0.54 16
24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.02 0.28 6.36 -51.93 -0.33 -0.05 16
26 H 0.04 0.76 4.82 -51.93 -0.25 0.51 16
27 H 0.02 0.35 6.62 -51.93 -0.34 0.00 16
28 H 0.37 9.09 4.47 -40.82 -0.18 8.91 16
29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16
30 H 0.06 0.75 6.45 -51.93 -0.34 0.41 16
31 H 0.06 0.84 6.49 -51.93 -0.34 0.50 16
32 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16
33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.08 1.29 6.32 -51.93 -0.33 0.96 16
37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
38 H 0.07 1.34 7.30 -51.93 -0.38 0.96 16
39 H 0.05 0.74 6.36 -51.93 -0.33 0.41 16
LS Contribution 280.65 15.07 4.23 4.23
Total: -1.00 -31.37 280.65 -7.17 -38.54
By element:
Atomic # 1 Polarization: 11.77 SS G_CDS: -6.27 Total: 5.50 kcal
Atomic # 6 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal
Atomic # 7 Polarization: -56.92 SS G_CDS: -0.51 Total: -57.43 kcal
Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.26 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -31.37 -7.17 -38.54 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308580768.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.500 kcal
(2) G-P(sol) polarization free energy of solvation -31.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.133 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds