Wall clock time and date at job start Mon Mar 30 2020 03:23:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46891 * 111.00135 * 2 1
4 4 C 1.46901 * 110.99983 * 123.96012 * 2 1 3
5 5 C 1.52997 * 109.47679 * 58.47706 * 4 2 1
6 6 N 1.46504 * 109.46805 * 54.91103 * 5 4 2
7 7 C 1.36932 * 120.00066 * 175.09063 * 6 5 4
8 8 H 1.08000 * 120.00117 * 0.02562 * 7 6 5
9 9 C 1.38819 * 120.00178 * 180.02562 * 7 6 5
10 10 N 1.31619 * 120.00079 * 180.02562 * 9 7 6
11 11 Si 1.86801 * 119.99782 * 359.97438 * 9 7 6
12 12 H 1.48501 * 109.46788 * 90.00086 * 11 9 7
13 13 H 1.48501 * 109.47168 * 210.00234 * 11 9 7
14 14 H 1.48503 * 109.47106 * 330.00410 * 11 9 7
15 15 C 1.53004 * 109.46797 * 298.47874 * 4 2 1
16 16 C 1.52998 * 109.47144 * 179.97438 * 15 4 2
17 17 C 1.53006 * 109.46890 * 60.00387 * 16 15 4
18 18 C 1.53004 * 109.46911 * 299.99756 * 17 16 15
19 19 C 1.52997 * 109.47357 * 178.48253 * 4 2 1
20 20 H 1.08997 * 109.46590 * 298.32969 * 1 2 3
21 21 H 1.09000 * 109.46777 * 58.32711 * 1 2 3
22 22 H 1.08996 * 109.47173 * 178.33385 * 1 2 3
23 23 H 1.09010 * 109.47086 * 183.95124 * 3 2 1
24 24 H 1.08997 * 109.47207 * 303.95451 * 3 2 1
25 25 H 1.09004 * 109.47281 * 63.96192 * 3 2 1
26 26 H 1.09000 * 109.47500 * 174.91125 * 5 4 2
27 27 H 1.09002 * 109.47463 * 294.91818 * 5 4 2
28 28 H 0.97000 * 119.99704 * 355.08887 * 6 5 4
29 29 H 0.96996 * 119.99655 * 179.97438 * 10 9 7
30 30 H 1.08995 * 109.47160 * 300.00269 * 15 4 2
31 31 H 1.09007 * 109.46771 * 60.00292 * 15 4 2
32 32 H 1.08995 * 109.47451 * 300.00262 * 16 15 4
33 33 H 1.09003 * 109.47550 * 179.97438 * 16 15 4
34 34 H 1.09000 * 109.46899 * 180.02562 * 17 16 15
35 35 H 1.08995 * 109.47176 * 59.99706 * 17 16 15
36 36 H 1.08995 * 109.47160 * 299.99960 * 18 17 16
37 37 H 1.08997 * 109.46696 * 180.02562 * 18 17 16
38 38 H 1.08997 * 109.47265 * 299.99758 * 19 4 2
39 39 H 1.09002 * 109.46934 * 59.99791 * 19 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.9955 -0.7661 1.1375
5 6 1.4742 -2.2030 1.0698
6 7 1.8099 -2.7833 -0.2328
7 6 1.5321 -4.0996 -0.4880
8 1 1.0652 -4.7100 0.2709
9 6 1.8506 -4.6496 -1.7221
10 7 1.5831 -5.9148 -1.9676
11 14 2.6575 -3.5938 -3.0350
12 1 4.1338 -3.6742 -2.8965
13 1 2.2588 -4.0843 -4.3788
14 1 2.2212 -2.1835 -2.8733
15 6 1.5361 -0.1180 2.4452
16 6 2.0838 -0.9162 3.6299
17 6 3.6128 -0.9258 3.5752
18 6 4.0723 -1.5739 2.2675
19 6 3.5245 -0.7751 1.0825
20 1 -0.3632 0.4877 0.9046
21 1 -0.3633 0.5396 -0.8746
22 1 -0.3633 -1.0272 -0.0299
23 1 3.0829 1.3431 -0.0708
24 1 1.5899 1.9162 -0.8524
25 1 1.7046 1.8722 0.9234
26 1 1.9354 -2.7945 1.8608
27 1 0.3920 -2.2034 1.1997
28 1 2.2288 -2.2350 -0.9145
29 1 1.8053 -6.2990 -2.8300
30 1 1.9074 0.9056 2.4934
31 1 0.4467 -0.1116 2.4843
32 1 1.7121 -1.9397 3.5815
33 1 1.7569 -0.4543 4.5616
34 1 4.0030 -1.4948 4.4190
35 1 3.9845 0.0977 3.6236
36 1 3.7006 -2.5973 2.2191
37 1 5.1615 -1.5810 2.2288
38 1 3.8518 -1.2368 0.1510
39 1 3.8958 0.2486 1.1309
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308580768.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:22
Heat of formation + Delta-G solvation = -7.490879 kcal
Electronic energy + Delta-G solvation = -17291.433095 eV
Core-core repulsion = 14847.257721 eV
Total energy + Delta-G solvation = -2444.175373 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.20844 -36.58560 -36.14848 -33.36306 -31.75818 -30.70184 -28.87433 -26.85440
-25.02360 -24.03141 -23.27143 -21.82040 -20.00810 -18.69972 -17.39597 -16.58782
-16.19295 -15.79049 -15.52351 -15.35585 -14.81709 -14.63582 -14.48155 -13.91316
-13.83705 -13.53720 -13.05162 -12.97438 -12.86657 -12.67869 -12.54530 -12.41600
-12.11072 -11.90126 -11.77698 -11.68174 -11.23226 -11.12090 -10.87510 -10.86214
-9.17837 -9.02123 -7.99121 -5.27815 1.39621 1.41568 1.52332 2.52115
3.02259 3.33101 3.69410 3.77286 3.96970 4.08531 4.20545 4.28638
4.36455 4.46317 4.50596 4.54518 4.63879 4.70961 4.72234 4.80907
4.85907 4.97565 5.03120 5.07071 5.14561 5.17115 5.17866 5.28474
5.29779 5.40826 5.52156 5.62999 5.78914 6.21988 6.27980 6.31943
7.15486 7.95761 8.18048 9.23135
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.027444 B = 0.009958 C = 0.008873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1020.018198 B = 2811.130320 C = 3154.864505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.556 5.556
3 C 0.021 3.979
4 C 0.111 3.889
5 C 0.167 3.833
6 N -0.743 5.743
7 C -0.223 4.223
8 H 0.052 0.948
9 C -0.064 4.064
10 N -0.987 5.987
11 Si 0.949 3.051
12 H -0.280 1.280
13 H -0.298 1.298
14 H -0.253 1.253
15 C -0.135 4.135
16 C -0.118 4.118
17 C -0.109 4.109
18 C -0.122 4.122
19 C -0.100 4.100
20 H 0.041 0.959
21 H 0.069 0.931
22 H 0.049 0.951
23 H 0.072 0.928
24 H 0.070 0.930
25 H 0.041 0.959
26 H 0.034 0.966
27 H 0.009 0.991
28 H 0.372 0.628
29 H 0.256 0.744
30 H 0.081 0.919
31 H 0.061 0.939
32 H 0.049 0.951
33 H 0.079 0.921
34 H 0.069 0.931
35 H 0.075 0.925
36 H 0.045 0.955
37 H 0.069 0.931
38 H 0.042 0.958
39 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.929 18.091 10.087 20.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 N -0.279 5.279
3 C -0.126 4.126
4 C 0.021 3.979
5 C 0.041 3.959
6 N -0.389 5.389
7 C -0.354 4.354
8 H 0.070 0.930
9 C -0.255 4.255
10 N -0.638 5.638
11 Si 0.777 3.223
12 H -0.206 1.206
13 H -0.225 1.225
14 H -0.177 1.177
15 C -0.174 4.174
16 C -0.156 4.156
17 C -0.147 4.147
18 C -0.160 4.160
19 C -0.137 4.137
20 H 0.059 0.941
21 H 0.088 0.912
22 H 0.068 0.932
23 H 0.090 0.910
24 H 0.088 0.912
25 H 0.059 0.941
26 H 0.051 0.949
27 H 0.026 0.974
28 H 0.206 0.794
29 H 0.064 0.936
30 H 0.099 0.901
31 H 0.079 0.921
32 H 0.068 0.932
33 H 0.097 0.903
34 H 0.088 0.912
35 H 0.094 0.906
36 H 0.063 0.937
37 H 0.088 0.912
38 H 0.061 0.939
39 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 2.997 17.688 9.693 20.391
hybrid contribution -0.117 0.060 -0.495 0.512
sum 2.880 17.748 9.198 20.196
Atomic orbital electron populations
1.22343 0.87433 1.01534 1.00788 1.62019 1.08350 1.14632 1.42922
1.22492 1.01073 0.87961 1.01108 1.21202 0.95318 0.92336 0.89042
1.20900 0.95958 0.92013 0.87064 1.42573 1.74476 1.07835 1.13977
1.19058 1.31201 0.87007 0.98163 0.92964 1.25389 1.03072 0.97060
0.99982 1.69882 1.55965 1.13926 1.24072 0.85464 0.78556 0.79697
0.78550 1.20643 1.22474 1.17732 1.22071 1.00634 1.00214 0.94470
1.21534 0.96149 0.99991 0.97907 1.21490 0.95241 1.01360 0.96594
1.21584 1.00439 0.99071 0.94914 1.21522 0.93199 1.00740 0.98279
0.94106 0.91206 0.93243 0.90969 0.91171 0.94080 0.94871 0.97367
0.79384 0.93555 0.90079 0.92066 0.93225 0.90269 0.91244 0.90649
0.93659 0.91222 0.93873 0.90152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.79 8.81 127.69 1.13 1.91 16
2 N -0.56 -16.88 4.21 -898.69 -3.78 -20.66 16
3 C 0.02 0.48 8.81 127.69 1.13 1.60 16
4 C 0.11 3.36 0.11 3.53 0.00 3.36 16
5 C 0.17 6.70 3.87 86.38 0.33 7.03 16
6 N -0.74 -36.56 4.93 -343.44 -1.69 -38.25 16
7 C -0.22 -13.27 10.47 84.04 0.88 -12.39 16
8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16
9 C -0.06 -3.94 5.50 84.86 0.47 -3.47 16
10 N -0.99 -65.41 13.97 21.65 0.30 -65.11 16
11 Si 0.95 48.24 27.74 68.60 1.90 50.14 16
12 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16
13 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16
14 H -0.25 -12.05 6.52 99.48 0.65 -11.40 16
15 C -0.13 -3.18 4.04 30.60 0.12 -3.05 16
16 C -0.12 -2.61 5.65 30.60 0.17 -2.44 16
17 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16
18 C -0.12 -3.30 5.65 30.61 0.17 -3.12 16
19 C -0.10 -2.89 4.30 30.61 0.13 -2.76 16
20 H 0.04 1.00 6.46 -2.39 -0.02 0.99 16
21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
22 H 0.05 1.76 6.26 -2.39 -0.01 1.74 16
23 H 0.07 1.56 6.26 -2.38 -0.01 1.55 16
24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
25 H 0.04 0.79 6.36 -2.38 -0.02 0.77 16
26 H 0.03 1.38 4.82 -2.39 -0.01 1.36 16
27 H 0.01 0.36 6.62 -2.39 -0.02 0.34 16
28 H 0.37 18.08 4.47 -92.71 -0.41 17.67 16
29 H 0.26 16.17 8.31 -92.71 -0.77 15.39 16
30 H 0.08 1.62 6.45 -2.39 -0.02 1.61 16
31 H 0.06 1.47 6.49 -2.38 -0.02 1.46 16
32 H 0.05 1.30 6.55 -2.39 -0.02 1.29 16
33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
35 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16
36 H 0.04 1.51 6.32 -2.39 -0.02 1.49 16
37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
38 H 0.04 1.51 7.30 -2.39 -0.02 1.49 16
39 H 0.08 1.91 6.36 -2.39 -0.02 1.89 16
Total: -1.00 -69.00 280.65 2.00 -67.00
By element:
Atomic # 1 Polarization: 21.77 SS G_CDS: 0.56 Total: 22.32 kcal
Atomic # 6 Polarization: -20.15 SS G_CDS: 4.71 Total: -15.44 kcal
Atomic # 7 Polarization: -118.85 SS G_CDS: -5.17 Total: -124.02 kcal
Atomic # 14 Polarization: 48.24 SS G_CDS: 1.90 Total: 50.14 kcal
Total: -69.00 2.00 -67.00 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308580768.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.508 kcal
(2) G-P(sol) polarization free energy of solvation -68.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.491 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds