Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46891 * 111.00135 * 2 1 4 4 C 1.46901 * 110.99983 * 123.96012 * 2 1 3 5 5 C 1.52997 * 109.47679 * 58.47706 * 4 2 1 6 6 N 1.46504 * 109.46805 * 54.91103 * 5 4 2 7 7 C 1.36932 * 120.00066 * 175.09063 * 6 5 4 8 8 H 1.08000 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.38819 * 120.00178 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00079 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99782 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46788 * 90.00086 * 11 9 7 13 13 H 1.48501 * 109.47168 * 210.00234 * 11 9 7 14 14 H 1.48503 * 109.47106 * 330.00410 * 11 9 7 15 15 C 1.53004 * 109.46797 * 298.47874 * 4 2 1 16 16 C 1.52998 * 109.47144 * 179.97438 * 15 4 2 17 17 C 1.53006 * 109.46890 * 60.00387 * 16 15 4 18 18 C 1.53004 * 109.46911 * 299.99756 * 17 16 15 19 19 C 1.52997 * 109.47357 * 178.48253 * 4 2 1 20 20 H 1.08997 * 109.46590 * 298.32969 * 1 2 3 21 21 H 1.09000 * 109.46777 * 58.32711 * 1 2 3 22 22 H 1.08996 * 109.47173 * 178.33385 * 1 2 3 23 23 H 1.09010 * 109.47086 * 183.95124 * 3 2 1 24 24 H 1.08997 * 109.47207 * 303.95451 * 3 2 1 25 25 H 1.09004 * 109.47281 * 63.96192 * 3 2 1 26 26 H 1.09000 * 109.47500 * 174.91125 * 5 4 2 27 27 H 1.09002 * 109.47463 * 294.91818 * 5 4 2 28 28 H 0.97000 * 119.99704 * 355.08887 * 6 5 4 29 29 H 0.96996 * 119.99655 * 179.97438 * 10 9 7 30 30 H 1.08995 * 109.47160 * 300.00269 * 15 4 2 31 31 H 1.09007 * 109.46771 * 60.00292 * 15 4 2 32 32 H 1.08995 * 109.47451 * 300.00262 * 16 15 4 33 33 H 1.09003 * 109.47550 * 179.97438 * 16 15 4 34 34 H 1.09000 * 109.46899 * 180.02562 * 17 16 15 35 35 H 1.08995 * 109.47176 * 59.99706 * 17 16 15 36 36 H 1.08995 * 109.47160 * 299.99960 * 18 17 16 37 37 H 1.08997 * 109.46696 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47265 * 299.99758 * 19 4 2 39 39 H 1.09002 * 109.46934 * 59.99791 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.4742 -2.2030 1.0698 6 7 1.8099 -2.7833 -0.2328 7 6 1.5321 -4.0996 -0.4880 8 1 1.0652 -4.7100 0.2709 9 6 1.8506 -4.6496 -1.7221 10 7 1.5831 -5.9148 -1.9676 11 14 2.6575 -3.5938 -3.0350 12 1 4.1338 -3.6742 -2.8965 13 1 2.2588 -4.0843 -4.3788 14 1 2.2212 -2.1835 -2.8733 15 6 1.5361 -0.1180 2.4452 16 6 2.0838 -0.9162 3.6299 17 6 3.6128 -0.9258 3.5752 18 6 4.0723 -1.5739 2.2675 19 6 3.5245 -0.7751 1.0825 20 1 -0.3632 0.4877 0.9046 21 1 -0.3633 0.5396 -0.8746 22 1 -0.3633 -1.0272 -0.0299 23 1 3.0829 1.3431 -0.0708 24 1 1.5899 1.9162 -0.8524 25 1 1.7046 1.8722 0.9234 26 1 1.9354 -2.7945 1.8608 27 1 0.3920 -2.2034 1.1997 28 1 2.2288 -2.2350 -0.9145 29 1 1.8053 -6.2990 -2.8300 30 1 1.9074 0.9056 2.4934 31 1 0.4467 -0.1116 2.4843 32 1 1.7121 -1.9397 3.5815 33 1 1.7569 -0.4543 4.5616 34 1 4.0030 -1.4948 4.4190 35 1 3.9845 0.0977 3.6236 36 1 3.7006 -2.5973 2.2191 37 1 5.1615 -1.5810 2.2288 38 1 3.8518 -1.2368 0.1510 39 1 3.8958 0.2486 1.1309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308580768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = -7.490879 kcal Electronic energy + Delta-G solvation = -17291.433095 eV Core-core repulsion = 14847.257721 eV Total energy + Delta-G solvation = -2444.175373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.20844 -36.58560 -36.14848 -33.36306 -31.75818 -30.70184 -28.87433 -26.85440 -25.02360 -24.03141 -23.27143 -21.82040 -20.00810 -18.69972 -17.39597 -16.58782 -16.19295 -15.79049 -15.52351 -15.35585 -14.81709 -14.63582 -14.48155 -13.91316 -13.83705 -13.53720 -13.05162 -12.97438 -12.86657 -12.67869 -12.54530 -12.41600 -12.11072 -11.90126 -11.77698 -11.68174 -11.23226 -11.12090 -10.87510 -10.86214 -9.17837 -9.02123 -7.99121 -5.27815 1.39621 1.41568 1.52332 2.52115 3.02259 3.33101 3.69410 3.77286 3.96970 4.08531 4.20545 4.28638 4.36455 4.46317 4.50596 4.54518 4.63879 4.70961 4.72234 4.80907 4.85907 4.97565 5.03120 5.07071 5.14561 5.17115 5.17866 5.28474 5.29779 5.40826 5.52156 5.62999 5.78914 6.21988 6.27980 6.31943 7.15486 7.95761 8.18048 9.23135 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.009958 C = 0.008873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.018198 B = 2811.130320 C = 3154.864505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.021 3.979 4 C 0.111 3.889 5 C 0.167 3.833 6 N -0.743 5.743 7 C -0.223 4.223 8 H 0.052 0.948 9 C -0.064 4.064 10 N -0.987 5.987 11 Si 0.949 3.051 12 H -0.280 1.280 13 H -0.298 1.298 14 H -0.253 1.253 15 C -0.135 4.135 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.122 4.122 19 C -0.100 4.100 20 H 0.041 0.959 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.009 0.991 28 H 0.372 0.628 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 18.091 10.087 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.126 4.126 4 C 0.021 3.979 5 C 0.041 3.959 6 N -0.389 5.389 7 C -0.354 4.354 8 H 0.070 0.930 9 C -0.255 4.255 10 N -0.638 5.638 11 Si 0.777 3.223 12 H -0.206 1.206 13 H -0.225 1.225 14 H -0.177 1.177 15 C -0.174 4.174 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.137 4.137 20 H 0.059 0.941 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.206 0.794 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.997 17.688 9.693 20.391 hybrid contribution -0.117 0.060 -0.495 0.512 sum 2.880 17.748 9.198 20.196 Atomic orbital electron populations 1.22343 0.87433 1.01534 1.00788 1.62019 1.08350 1.14632 1.42922 1.22492 1.01073 0.87961 1.01108 1.21202 0.95318 0.92336 0.89042 1.20900 0.95958 0.92013 0.87064 1.42573 1.74476 1.07835 1.13977 1.19058 1.31201 0.87007 0.98163 0.92964 1.25389 1.03072 0.97060 0.99982 1.69882 1.55965 1.13926 1.24072 0.85464 0.78556 0.79697 0.78550 1.20643 1.22474 1.17732 1.22071 1.00634 1.00214 0.94470 1.21534 0.96149 0.99991 0.97907 1.21490 0.95241 1.01360 0.96594 1.21584 1.00439 0.99071 0.94914 1.21522 0.93199 1.00740 0.98279 0.94106 0.91206 0.93243 0.90969 0.91171 0.94080 0.94871 0.97367 0.79384 0.93555 0.90079 0.92066 0.93225 0.90269 0.91244 0.90649 0.93659 0.91222 0.93873 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 8.81 127.69 1.13 1.91 16 2 N -0.56 -16.88 4.21 -898.69 -3.78 -20.66 16 3 C 0.02 0.48 8.81 127.69 1.13 1.60 16 4 C 0.11 3.36 0.11 3.53 0.00 3.36 16 5 C 0.17 6.70 3.87 86.38 0.33 7.03 16 6 N -0.74 -36.56 4.93 -343.44 -1.69 -38.25 16 7 C -0.22 -13.27 10.47 84.04 0.88 -12.39 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 9 C -0.06 -3.94 5.50 84.86 0.47 -3.47 16 10 N -0.99 -65.41 13.97 21.65 0.30 -65.11 16 11 Si 0.95 48.24 27.74 68.60 1.90 50.14 16 12 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 13 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 14 H -0.25 -12.05 6.52 99.48 0.65 -11.40 16 15 C -0.13 -3.18 4.04 30.60 0.12 -3.05 16 16 C -0.12 -2.61 5.65 30.60 0.17 -2.44 16 17 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 18 C -0.12 -3.30 5.65 30.61 0.17 -3.12 16 19 C -0.10 -2.89 4.30 30.61 0.13 -2.76 16 20 H 0.04 1.00 6.46 -2.39 -0.02 0.99 16 21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.05 1.76 6.26 -2.39 -0.01 1.74 16 23 H 0.07 1.56 6.26 -2.38 -0.01 1.55 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 0.79 6.36 -2.38 -0.02 0.77 16 26 H 0.03 1.38 4.82 -2.39 -0.01 1.36 16 27 H 0.01 0.36 6.62 -2.39 -0.02 0.34 16 28 H 0.37 18.08 4.47 -92.71 -0.41 17.67 16 29 H 0.26 16.17 8.31 -92.71 -0.77 15.39 16 30 H 0.08 1.62 6.45 -2.39 -0.02 1.61 16 31 H 0.06 1.47 6.49 -2.38 -0.02 1.46 16 32 H 0.05 1.30 6.55 -2.39 -0.02 1.29 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.04 1.51 6.32 -2.39 -0.02 1.49 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.51 7.30 -2.39 -0.02 1.49 16 39 H 0.08 1.91 6.36 -2.39 -0.02 1.89 16 Total: -1.00 -69.00 280.65 2.00 -67.00 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.56 Total: 22.32 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 4.71 Total: -15.44 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.17 Total: -124.02 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.90 Total: 50.14 kcal Total: -69.00 2.00 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308580768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.508 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds