Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00021 * 2 1 4 4 C 1.53005 * 109.47055 * 66.04470 * 3 2 1 5 5 C 1.52996 * 109.47137 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47277 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99480 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00292 * 179.72566 * 6 5 4 9 9 N 1.31516 * 119.99786 * 0.27524 * 8 6 5 10 10 Si 1.86797 * 120.00126 * 180.27640 * 8 6 5 11 11 H 1.48497 * 109.47235 * 60.00076 * 10 8 6 12 12 H 1.48502 * 109.47125 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47213 * 299.99807 * 10 8 6 14 14 C 1.46902 * 110.99962 * 236.04636 * 2 1 3 15 15 H 1.09008 * 110.28775 * 65.64786 * 14 2 1 16 16 C 1.54252 * 110.32356 * 187.77503 * 14 2 1 17 17 C 1.54375 * 105.06199 * 118.89948 * 16 14 2 18 18 N 1.48563 * 104.59457 * 23.85159 * 17 16 14 19 19 C 1.46905 * 111.00030 * 200.96162 * 18 17 16 20 20 C 1.48724 * 104.28619 * 320.57374 * 18 17 16 21 21 H 1.08998 * 109.47383 * 55.30605 * 1 2 3 22 22 H 1.09005 * 109.47007 * 175.30624 * 1 2 3 23 23 H 1.08999 * 109.47051 * 295.30344 * 1 2 3 24 24 H 1.09005 * 109.47026 * 306.05338 * 3 2 1 25 25 H 1.08992 * 109.47120 * 186.05098 * 3 2 1 26 26 H 1.08997 * 109.46634 * 60.00254 * 4 3 2 27 27 H 1.09000 * 109.47034 * 300.00267 * 4 3 2 28 28 H 1.09003 * 109.47046 * 59.99847 * 5 4 3 29 29 H 1.09000 * 109.46881 * 300.00331 * 5 4 3 30 30 H 0.97004 * 119.99894 * 180.02562 * 9 8 6 31 31 H 1.09006 * 110.32700 * 237.79406 * 16 14 2 32 32 H 1.08998 * 110.32887 * 359.97438 * 16 14 2 33 33 H 1.09003 * 110.41555 * 142.63349 * 17 16 14 34 34 H 1.09002 * 110.41209 * 265.07587 * 17 16 14 35 35 H 1.09004 * 109.46720 * 60.12844 * 19 18 17 36 36 H 1.08997 * 109.46950 * 180.11974 * 19 18 17 37 37 H 1.09003 * 109.47103 * 300.12667 * 19 18 17 38 38 H 1.08997 * 110.38813 * 280.63870 * 20 18 17 39 39 H 1.08998 * 110.50667 * 158.14278 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3180 6 6 1.8212 4.1615 2.6167 7 1 1.2588 3.6255 3.3670 8 6 2.2159 5.4619 2.8491 9 7 2.9003 6.1146 1.9352 10 14 1.7788 6.2966 4.4621 11 1 2.3717 5.5346 5.5904 12 1 2.3156 7.6812 4.4643 13 1 0.3022 6.3374 4.6141 14 6 1.9955 -0.7660 -1.1376 15 1 1.7373 -0.2748 -2.0759 16 6 3.5255 -0.9208 -1.0172 17 6 3.7692 -2.4428 -0.9319 18 7 2.5765 -3.0496 -1.5772 19 6 2.4020 -4.4455 -1.1539 20 6 1.4412 -2.2067 -1.1164 21 1 -0.3634 0.5849 -0.8449 22 1 -0.3633 -1.0243 -0.0841 23 1 -0.3633 0.4392 0.9291 24 1 1.5610 1.9274 -0.8309 25 1 3.0797 1.3444 -0.1083 26 1 2.0658 1.5015 2.1491 27 1 0.5472 2.0844 1.4265 28 1 1.7445 4.0416 0.4871 29 1 3.2634 3.4593 1.2096 30 1 3.1784 7.0294 2.0989 31 1 4.0183 -0.5072 -1.8971 32 1 3.8860 -0.4281 -0.1142 33 1 4.6746 -2.7139 -1.4750 34 1 3.8403 -2.7587 0.1089 35 1 2.2693 -4.4834 -0.0726 36 1 1.5232 -4.8662 -1.6427 37 1 3.2838 -5.0226 -1.4323 38 1 1.1469 -2.4860 -0.1048 39 1 0.5959 -2.2988 -1.7983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379568977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -0.630374 kcal Electronic energy + Delta-G solvation = -15892.008111 eV Core-core repulsion = 13448.130231 eV Total energy + Delta-G solvation = -2443.877880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42547 -36.59066 -33.63591 -31.75754 -30.92675 -28.49817 -26.99669 -25.94658 -24.25871 -22.27995 -21.11080 -19.96516 -19.61198 -16.48819 -16.18904 -16.00057 -14.91509 -14.59012 -14.37737 -14.14342 -13.66893 -13.58255 -13.11696 -12.59228 -12.26303 -11.88682 -11.85513 -11.56632 -11.53145 -11.25895 -11.10222 -10.91781 -10.81998 -10.67256 -10.48717 -10.42676 -9.57989 -9.29802 -9.04109 -8.64568 -8.31542 -8.05754 -5.97005 -3.99069 3.35312 3.39365 3.42112 3.80043 4.31829 4.49560 4.57587 4.67779 5.09263 5.19927 5.29209 5.30782 5.38595 5.42165 5.53850 5.59257 5.63209 5.66309 5.82071 5.84740 5.91523 5.99125 6.07584 6.12174 6.15991 6.38102 6.61566 6.72089 6.81800 6.86020 7.15253 7.39927 7.43320 7.71268 7.86767 8.03587 8.47015 9.07944 9.64725 11.14443 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056352 B = 0.004482 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.756800 B = 6245.399860 C = 6393.144532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.054 3.946 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.078 3.922 15 H 0.048 0.952 16 C -0.120 4.120 17 C 0.036 3.964 18 N -0.519 5.519 19 C 0.014 3.986 20 C 0.039 3.961 21 H 0.023 0.977 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -17.355 -6.651 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.073 4.073 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.031 4.031 15 H 0.066 0.934 16 C -0.158 4.158 17 C -0.092 4.092 18 N -0.243 5.243 19 C -0.135 4.135 20 C -0.089 4.089 21 H 0.042 0.958 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.118 -17.440 -6.848 18.770 hybrid contribution -0.586 0.918 0.995 1.475 sum -1.705 -16.522 -5.853 17.611 Atomic orbital electron populations 1.22413 0.87864 1.00824 1.01524 1.62254 1.07631 1.15264 1.41084 1.22348 0.99835 0.85960 0.99137 1.21639 1.00056 0.98144 0.94353 1.19069 0.96220 0.89346 0.96933 1.21218 1.34738 0.97710 1.02043 0.92765 1.25023 0.95237 0.97493 0.96727 1.69959 1.38291 1.11398 1.33982 0.86661 0.78725 0.78479 0.84150 1.20241 1.21316 1.20276 1.22324 0.94909 0.93297 0.92599 0.93412 1.22414 0.95056 0.95351 1.03008 1.23092 0.94055 0.94586 0.97485 1.65382 1.03080 1.01987 1.53899 1.22490 1.02329 0.90162 0.98471 1.23223 0.94027 0.92235 0.99402 0.95797 0.92130 0.90707 0.95324 0.91029 0.92719 0.93484 0.96852 0.96635 0.92999 0.91106 0.89637 0.90330 0.93532 0.95248 0.91457 0.91401 0.92459 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.04 60.07 0.54 0.85 16 2 N -0.54 -8.22 4.53 -233.22 -1.06 -9.27 16 3 C 0.05 0.96 4.74 -3.82 -0.02 0.95 16 4 C -0.10 -2.20 5.07 -26.73 -0.14 -2.33 16 5 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.08 1.04 2.79 -66.33 -0.18 0.86 16 15 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 16 C -0.12 -1.52 6.01 -25.36 -0.15 -1.67 16 17 C 0.04 0.40 6.50 -2.18 -0.01 0.39 16 18 N -0.52 -5.95 5.66 -238.08 -1.35 -7.30 16 19 C 0.01 0.13 9.53 60.07 0.57 0.71 16 20 C 0.04 0.46 4.74 -2.09 -0.01 0.45 16 21 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 22 H 0.06 0.71 6.46 -51.93 -0.34 0.38 16 23 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 24 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.07 1.26 6.39 -51.93 -0.33 0.93 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.98 6.66 -51.93 -0.35 0.63 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.18 6.79 -51.93 -0.35 0.83 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.53 7.97 -51.93 -0.41 0.12 16 35 H 0.03 0.27 7.98 -51.93 -0.41 -0.14 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.71 7.33 -51.93 -0.38 0.32 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -30.22 304.07 -9.16 -39.38 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -7.11 Total: -4.64 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 0.05 Total: -13.09 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -1.67 Total: -43.13 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.22 -9.16 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379568977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.752 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds