Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00065 * 2 1 4 4 C 1.52998 * 109.47440 * 300.54610 * 3 2 1 5 5 C 1.52998 * 109.46902 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47004 * 179.97438 * 5 4 3 7 7 H 1.08008 * 119.99647 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00407 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99737 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46873 * 89.99725 * 10 8 6 12 12 H 1.48501 * 109.47229 * 210.00053 * 10 8 6 13 13 H 1.48499 * 109.47129 * 330.00029 * 10 8 6 14 14 C 1.46897 * 111.00240 * 123.95961 * 2 1 3 15 15 C 1.52998 * 112.91021 * 75.13288 * 14 2 1 16 16 N 1.46903 * 109.46926 * 44.12936 * 15 14 2 17 17 C 1.53786 * 113.61328 * 303.88483 * 14 2 1 18 18 C 1.53775 * 87.07938 * 220.01896 * 17 14 2 19 19 C 1.53777 * 113.61466 * 206.38839 * 14 2 1 20 20 H 1.08998 * 109.46545 * 302.79562 * 1 2 3 21 21 H 1.08995 * 109.47056 * 62.79245 * 1 2 3 22 22 H 1.09000 * 109.46939 * 182.79585 * 1 2 3 23 23 H 1.09003 * 109.47021 * 60.54992 * 3 2 1 24 24 H 1.09007 * 109.46676 * 180.54343 * 3 2 1 25 25 H 1.08999 * 109.46713 * 299.99793 * 4 3 2 26 26 H 1.08999 * 109.47101 * 59.99602 * 4 3 2 27 27 H 1.08999 * 109.47122 * 299.99365 * 5 4 3 28 28 H 1.08999 * 109.47713 * 59.99799 * 5 4 3 29 29 H 0.97000 * 119.99921 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47838 * 164.13243 * 15 14 2 31 31 H 1.09002 * 109.47348 * 284.13767 * 15 14 2 32 32 H 1.00903 * 110.99770 * 56.05102 * 16 15 14 33 33 H 1.00902 * 110.99824 * 179.97438 * 16 15 14 34 34 H 1.09001 * 113.61288 * 105.46687 * 17 14 2 35 35 H 1.09001 * 113.61287 * 334.56727 * 17 14 2 36 36 H 1.08997 * 113.61538 * 139.98417 * 18 17 14 37 37 H 1.09005 * 113.61444 * 270.88149 * 18 17 14 38 38 H 1.08991 * 113.62002 * 25.42983 * 19 14 2 39 39 H 1.09002 * 113.68792 * 254.53759 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4939 2.1103 -1.2423 5 6 2.0428 3.5385 -1.2425 6 6 1.5492 4.2661 -2.4664 7 1 0.9078 3.7606 -3.1732 8 6 1.9156 5.5775 -2.6834 9 7 1.4845 6.2126 -3.7513 10 14 3.0244 6.4520 -1.4606 11 1 4.4439 6.2515 -1.8482 12 1 2.7119 7.9038 -1.4594 13 1 2.7989 5.8960 -0.1023 14 6 1.9955 -0.7661 1.1375 15 6 1.8714 -2.2788 0.9453 16 7 2.2810 -2.6342 -0.4200 17 6 1.4829 -0.2743 2.5014 18 6 2.9058 -0.5124 3.0337 19 6 3.3946 -0.3152 1.5891 20 1 -0.3632 0.5566 0.8639 21 1 -0.3633 0.4698 -0.9139 22 1 -0.3633 -1.0265 0.0501 23 1 1.6540 1.8917 0.8949 24 1 3.0851 1.3423 -0.0097 25 1 1.8355 1.5901 -2.1371 26 1 0.4043 2.1394 -1.2325 27 1 1.7015 4.0590 -0.3477 28 1 3.1323 3.5091 -1.2524 29 1 1.7425 7.1351 -3.9041 30 1 2.5139 -2.7902 1.6620 31 1 0.8365 -2.5817 1.1044 32 1 3.2153 -2.3064 -0.6141 33 1 2.2083 -3.6290 -0.5720 34 1 0.7343 -0.9287 2.9483 35 1 1.1855 0.7743 2.5039 36 1 3.2501 0.2608 3.7205 37 1 3.0663 -1.5208 3.4152 38 1 3.6200 0.7222 1.3422 39 1 4.1905 -1.0016 1.2999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385147265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = 23.595647 kcal Electronic energy + Delta-G solvation = -16341.455027 eV Core-core repulsion = 13898.627667 eV Total energy + Delta-G solvation = -2442.827361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33671 -35.57682 -33.74641 -33.17328 -31.24466 -27.72742 -26.60308 -25.62516 -24.75411 -22.41964 -21.67168 -19.92209 -17.86375 -16.59165 -16.50866 -15.94962 -15.12334 -14.83273 -14.25444 -14.02587 -13.93909 -13.28721 -13.07490 -12.77951 -12.46426 -12.25474 -11.85290 -11.64465 -11.40411 -11.24211 -10.93190 -10.78344 -10.68112 -10.52090 -10.14337 -9.78280 -9.57171 -9.49363 -9.09509 -8.53561 -8.48042 -7.77119 -5.98463 -3.95582 3.33968 3.40883 3.44868 4.06765 4.40148 4.50019 4.53530 4.63553 4.74202 4.91850 5.33144 5.35432 5.41331 5.47923 5.57825 5.67155 5.70748 5.75744 5.78357 5.82916 5.91943 6.03086 6.08682 6.20537 6.32956 6.39464 6.66782 6.70000 7.00680 7.14395 7.40362 7.45746 7.51316 7.55139 7.58680 7.87339 8.61981 9.07848 9.64517 11.15273 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.005974 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.470721 B = 4685.739675 C = 5036.191112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.505 5.505 3 C 0.049 3.951 4 C -0.098 4.098 5 C -0.013 4.013 6 C -0.516 4.516 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.906 5.906 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.093 3.907 15 C 0.098 3.902 16 N -0.828 5.828 17 C -0.168 4.168 18 C -0.140 4.140 19 C -0.145 4.145 20 H 0.017 0.983 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.023 0.977 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.011 0.989 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.342 0.658 33 H 0.332 0.668 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -16.566 13.375 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.227 5.227 3 C -0.078 4.078 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.554 4.554 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 C 0.002 3.998 15 C -0.034 4.034 16 N -0.357 5.357 17 C -0.208 4.208 18 C -0.178 4.178 19 C -0.183 4.183 20 H 0.036 0.964 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.907 -16.167 12.599 20.585 hybrid contribution 1.028 0.485 1.830 2.154 sum 2.935 -15.682 14.429 21.511 Atomic orbital electron populations 1.22278 0.87713 1.00828 1.00782 1.61804 1.07401 1.13268 1.40268 1.22480 0.99809 0.87099 0.98450 1.21489 0.99991 0.96322 0.95770 1.19550 0.95752 0.92407 0.97360 1.21169 1.30748 0.96860 1.06630 0.91019 1.25037 0.95924 0.97437 0.95196 1.69921 1.45854 1.11554 1.27178 0.86779 0.81297 0.78654 0.82533 1.20327 1.21478 1.19139 1.22456 0.95399 0.93913 0.88039 1.21411 0.99938 0.92548 0.89474 1.58395 1.32954 1.18781 1.25579 1.23542 0.96935 1.02053 0.98257 1.22742 0.96789 1.01491 0.96741 1.23412 0.96274 1.03084 0.95487 0.96426 0.90811 0.92208 0.95837 0.90907 0.91957 0.92871 0.97040 0.97201 0.92840 0.95652 0.91417 0.84480 0.85606 0.91693 0.89767 0.91460 0.90499 0.88442 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.65 60.07 0.52 0.98 16 2 N -0.51 -7.56 4.42 -226.22 -1.00 -8.56 16 3 C 0.05 0.83 3.88 -3.82 -0.01 0.81 16 4 C -0.10 -2.03 4.90 -26.73 -0.13 -2.16 16 5 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 6 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 7 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 10 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 14 C 0.09 1.13 0.81 -130.79 -0.11 1.02 16 15 C 0.10 1.03 5.87 -3.82 -0.02 1.01 16 16 N -0.83 -8.93 9.25 -10.37 -0.10 -9.03 16 17 C -0.17 -1.91 6.08 -25.92 -0.16 -2.06 16 18 C -0.14 -1.40 7.73 -25.92 -0.20 -1.60 16 19 C -0.15 -1.67 6.70 -25.92 -0.17 -1.84 16 20 H 0.02 0.25 7.32 -51.93 -0.38 -0.13 16 21 H 0.07 1.16 6.45 -51.93 -0.33 0.83 16 22 H 0.06 0.79 7.29 -51.93 -0.38 0.42 16 23 H 0.02 0.40 6.86 -51.93 -0.36 0.05 16 24 H 0.07 1.22 5.90 -51.93 -0.31 0.91 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.05 1.11 6.46 -51.93 -0.34 0.78 16 27 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 28 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.03 0.23 7.38 -51.93 -0.38 -0.15 16 31 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 32 H 0.34 3.68 8.99 -39.29 -0.35 3.32 16 33 H 0.33 2.83 9.08 -39.29 -0.36 2.48 16 34 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.08 1.08 6.60 -51.93 -0.34 0.73 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.67 7.71 -51.93 -0.40 0.27 16 38 H 0.10 1.26 5.35 -51.93 -0.28 0.98 16 39 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 296.24 15.07 4.46 4.46 Total: -1.00 -31.22 296.24 -8.00 -39.22 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.64 Total: 2.09 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.83 Total: -17.94 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.32 Total: -45.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.22 -8.00 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385147265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.818 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds