Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00065 * 2 1 4 4 C 1.52998 * 109.47440 * 300.54610 * 3 2 1 5 5 C 1.52998 * 109.46902 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47004 * 179.97438 * 5 4 3 7 7 H 1.08008 * 119.99647 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00407 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99737 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46873 * 89.99725 * 10 8 6 12 12 H 1.48501 * 109.47229 * 210.00053 * 10 8 6 13 13 H 1.48499 * 109.47129 * 330.00029 * 10 8 6 14 14 C 1.46897 * 111.00240 * 123.95961 * 2 1 3 15 15 C 1.52998 * 112.91021 * 75.13288 * 14 2 1 16 16 N 1.46903 * 109.46926 * 44.12936 * 15 14 2 17 17 C 1.53786 * 113.61328 * 303.88483 * 14 2 1 18 18 C 1.53775 * 87.07938 * 220.01896 * 17 14 2 19 19 C 1.53777 * 113.61466 * 206.38839 * 14 2 1 20 20 H 1.08998 * 109.46545 * 302.79562 * 1 2 3 21 21 H 1.08995 * 109.47056 * 62.79245 * 1 2 3 22 22 H 1.09000 * 109.46939 * 182.79585 * 1 2 3 23 23 H 1.09003 * 109.47021 * 60.54992 * 3 2 1 24 24 H 1.09007 * 109.46676 * 180.54343 * 3 2 1 25 25 H 1.08999 * 109.46713 * 299.99793 * 4 3 2 26 26 H 1.08999 * 109.47101 * 59.99602 * 4 3 2 27 27 H 1.08999 * 109.47122 * 299.99365 * 5 4 3 28 28 H 1.08999 * 109.47713 * 59.99799 * 5 4 3 29 29 H 0.97000 * 119.99921 * 180.02562 * 9 8 6 30 30 H 1.08994 * 109.47838 * 164.13243 * 15 14 2 31 31 H 1.09002 * 109.47348 * 284.13767 * 15 14 2 32 32 H 1.00903 * 110.99770 * 56.05102 * 16 15 14 33 33 H 1.00902 * 110.99824 * 179.97438 * 16 15 14 34 34 H 1.09001 * 113.61288 * 105.46687 * 17 14 2 35 35 H 1.09001 * 113.61287 * 334.56727 * 17 14 2 36 36 H 1.08997 * 113.61538 * 139.98417 * 18 17 14 37 37 H 1.09005 * 113.61444 * 270.88149 * 18 17 14 38 38 H 1.08991 * 113.62002 * 25.42983 * 19 14 2 39 39 H 1.09002 * 113.68792 * 254.53759 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4939 2.1103 -1.2423 5 6 2.0428 3.5385 -1.2425 6 6 1.5492 4.2661 -2.4664 7 1 0.9078 3.7606 -3.1732 8 6 1.9156 5.5775 -2.6834 9 7 1.4845 6.2126 -3.7513 10 14 3.0244 6.4520 -1.4606 11 1 4.4439 6.2515 -1.8482 12 1 2.7119 7.9038 -1.4594 13 1 2.7989 5.8960 -0.1023 14 6 1.9955 -0.7661 1.1375 15 6 1.8714 -2.2788 0.9453 16 7 2.2810 -2.6342 -0.4200 17 6 1.4829 -0.2743 2.5014 18 6 2.9058 -0.5124 3.0337 19 6 3.3946 -0.3152 1.5891 20 1 -0.3632 0.5566 0.8639 21 1 -0.3633 0.4698 -0.9139 22 1 -0.3633 -1.0265 0.0501 23 1 1.6540 1.8917 0.8949 24 1 3.0851 1.3423 -0.0097 25 1 1.8355 1.5901 -2.1371 26 1 0.4043 2.1394 -1.2325 27 1 1.7015 4.0590 -0.3477 28 1 3.1323 3.5091 -1.2524 29 1 1.7425 7.1351 -3.9041 30 1 2.5139 -2.7902 1.6620 31 1 0.8365 -2.5817 1.1044 32 1 3.2153 -2.3064 -0.6141 33 1 2.2083 -3.6290 -0.5720 34 1 0.7343 -0.9287 2.9483 35 1 1.1855 0.7743 2.5039 36 1 3.2501 0.2608 3.7205 37 1 3.0663 -1.5208 3.4152 38 1 3.6200 0.7222 1.3422 39 1 4.1905 -1.0016 1.2999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385147265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = 0.798658 kcal Electronic energy + Delta-G solvation = -16342.443579 eV Core-core repulsion = 13898.627667 eV Total energy + Delta-G solvation = -2443.815912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30736 -36.98448 -35.12654 -34.54389 -33.13361 -29.29653 -27.66930 -26.81135 -25.88440 -23.80113 -22.86401 -21.64740 -19.07894 -18.58736 -17.56169 -16.82711 -16.37694 -16.24105 -15.89780 -15.22762 -14.96930 -14.74059 -14.55157 -14.05305 -13.84983 -13.53543 -13.22963 -13.10459 -12.76716 -12.44335 -12.39058 -12.21795 -11.85719 -11.74956 -11.54086 -11.41012 -11.33342 -11.18085 -10.95781 -10.75590 -9.32007 -8.92565 -8.29051 -6.33305 1.35149 1.37420 1.49608 2.36494 2.99104 3.05969 3.49263 3.66310 3.78194 3.90678 4.09928 4.18861 4.30748 4.53265 4.53544 4.61343 4.68553 4.72534 4.75706 4.82792 4.85949 4.93421 5.00905 5.02056 5.05020 5.11015 5.21204 5.22242 5.46201 5.54326 5.62881 5.67357 6.23348 6.28823 6.34166 6.53234 6.74900 6.78874 7.31132 8.88197 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.005974 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.470721 B = 4685.739675 C = 5036.191112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.514 5.514 3 C 0.063 3.937 4 C -0.088 4.088 5 C -0.008 4.008 6 C -0.533 4.533 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.247 1.247 14 C 0.087 3.913 15 C 0.102 3.898 16 N -0.843 5.843 17 C -0.168 4.168 18 C -0.127 4.127 19 C -0.149 4.149 20 H 0.020 0.980 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.025 0.975 24 H 0.079 0.921 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.342 0.658 33 H 0.344 0.656 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -17.625 15.951 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.237 5.237 3 C -0.064 4.064 4 C -0.126 4.126 5 C -0.046 4.046 6 C -0.571 4.571 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.777 3.223 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.170 1.170 14 C -0.004 4.004 15 C -0.030 4.030 16 N -0.374 5.374 17 C -0.208 4.208 18 C -0.165 4.165 19 C -0.186 4.186 20 H 0.039 0.961 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.043 0.957 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.271 -17.261 15.184 23.221 hybrid contribution 0.525 0.755 0.933 1.310 sum 3.796 -16.506 16.117 23.379 Atomic orbital electron populations 1.22218 0.87719 1.01490 0.99830 1.61748 1.07515 1.12026 1.42369 1.22209 1.00048 0.88109 0.96081 1.21301 0.99295 0.94706 0.97285 1.19476 0.96125 0.93965 0.94993 1.21512 1.30338 0.97535 1.07731 0.95417 1.26067 0.97673 0.98304 0.97400 1.70081 1.47592 1.12221 1.29520 0.85603 0.79141 0.77256 0.80301 1.18935 1.20846 1.17042 1.22681 0.95862 0.94579 0.87254 1.21397 1.00441 0.91253 0.89867 1.58383 1.33040 1.19956 1.25991 1.23499 0.98231 1.01196 0.97881 1.22721 0.95171 1.02761 0.95804 1.23403 0.96200 1.02339 0.96693 0.96118 0.92901 0.90809 0.95678 0.90241 0.93592 0.93810 0.96507 0.96269 0.92485 0.93586 0.91399 0.84530 0.84236 0.90528 0.91481 0.91092 0.88516 0.90046 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 8.65 127.69 1.10 2.11 16 2 N -0.51 -14.80 4.42 -869.63 -3.84 -18.65 16 3 C 0.06 2.09 3.88 86.30 0.33 2.42 16 4 C -0.09 -3.69 4.90 30.59 0.15 -3.54 16 5 C -0.01 -0.38 4.04 29.85 0.12 -0.25 16 6 C -0.53 -32.21 9.66 25.60 0.25 -31.97 16 7 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 8 C 0.00 0.11 5.47 84.65 0.46 0.58 16 9 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 10 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 11 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 14 C 0.09 1.91 0.81 4.05 0.00 1.91 16 15 C 0.10 1.86 5.87 86.30 0.51 2.36 16 16 N -0.84 -16.44 9.25 -186.72 -1.73 -18.16 16 17 C -0.17 -3.39 6.08 31.12 0.19 -3.20 16 18 C -0.13 -2.12 7.73 31.12 0.24 -1.88 16 19 C -0.15 -3.04 6.70 31.12 0.21 -2.83 16 20 H 0.02 0.56 7.32 -2.39 -0.02 0.55 16 21 H 0.05 1.70 6.45 -2.39 -0.02 1.68 16 22 H 0.07 1.86 7.29 -2.39 -0.02 1.85 16 23 H 0.03 0.83 6.86 -2.39 -0.02 0.81 16 24 H 0.08 2.54 5.90 -2.38 -0.01 2.53 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.04 1.89 6.46 -2.39 -0.02 1.87 16 27 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 28 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 29 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 30 H 0.05 0.67 7.38 -2.39 -0.02 0.65 16 31 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 32 H 0.34 6.68 8.99 -89.69 -0.81 5.88 16 33 H 0.34 5.14 9.08 -89.69 -0.81 4.33 16 34 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 35 H 0.07 1.59 6.60 -2.39 -0.02 1.58 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.27 7.71 -2.38 -0.02 1.25 16 38 H 0.08 1.94 5.35 -2.39 -0.01 1.93 16 39 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -67.95 296.24 -0.46 -68.41 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.64 Total: 16.75 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 3.57 Total: -34.29 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -5.27 Total: -98.12 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -67.95 -0.46 -68.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385147265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.211 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds