Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00148 * 2 1 4 4 H 1.08999 * 110.76562 * 31.80126 * 3 2 1 5 5 C 1.55141 * 110.70820 * 268.59955 * 3 2 1 6 6 C 1.54910 * 101.64977 * 205.96653 * 5 3 2 7 7 N 1.47841 * 104.79906 * 37.06942 * 6 5 3 8 8 C 1.46902 * 111.00056 * 213.63598 * 7 6 5 9 9 C 1.53003 * 109.46848 * 290.84449 * 8 7 6 10 10 C 1.53000 * 109.46986 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47355 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47168 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99854 * 179.72538 * 14 12 11 17 17 H 1.48504 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46816 * 120.00323 * 16 14 12 19 19 H 1.48495 * 109.46630 * 240.00111 * 16 14 12 20 20 C 1.47444 * 108.56830 * 335.90342 * 7 6 5 21 21 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47142 * 299.99915 * 1 2 3 23 23 H 1.09002 * 109.46534 * 59.99496 * 1 2 3 24 24 H 1.00899 * 110.99878 * 123.95725 * 2 1 3 25 25 H 1.09004 * 110.98885 * 324.05512 * 5 3 2 26 26 H 1.08997 * 110.98821 * 87.87585 * 5 3 2 27 27 H 1.08996 * 110.37059 * 278.23748 * 6 5 3 28 28 H 1.09007 * 110.37203 * 155.90275 * 6 5 3 29 29 H 1.08998 * 109.47251 * 170.84664 * 8 7 6 30 30 H 1.09002 * 109.46978 * 50.84182 * 8 7 6 31 31 H 1.09000 * 109.47521 * 60.00156 * 9 8 7 32 32 H 1.09002 * 109.47113 * 299.99651 * 9 8 7 33 33 H 1.09000 * 109.46966 * 59.99691 * 10 9 8 34 34 H 1.09002 * 109.46807 * 299.99713 * 10 9 8 35 35 H 1.08998 * 109.46837 * 59.99832 * 11 10 9 36 36 H 1.09002 * 109.46926 * 299.99636 * 11 10 9 37 37 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.88629 * 120.39363 * 20 7 6 39 39 H 1.08992 * 109.88642 * 241.58449 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3253 2.0426 0.5371 5 6 2.2252 1.8708 -1.4507 6 6 3.3378 2.9289 -1.2448 7 7 4.2050 2.3644 -0.1889 8 6 4.7618 3.4270 0.6589 9 6 5.7716 4.2462 -0.1475 10 6 6.3521 5.3525 0.7357 11 6 7.3614 6.1722 -0.0708 12 6 7.9326 7.2622 0.7989 13 1 7.6080 7.3609 1.8242 14 6 8.8698 8.1337 0.2856 15 7 9.2648 8.0139 -0.9631 16 14 9.5722 9.4897 1.3614 17 1 8.9639 9.4136 2.7140 18 1 11.0437 9.3225 1.4708 19 1 9.2678 10.8104 0.7548 20 6 3.4124 1.4118 0.6101 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 1.8306 -0.5262 0.7813 25 1 2.5710 1.0604 -2.0925 26 1 1.3215 2.3278 -1.8540 27 1 2.9061 3.8743 -0.9163 28 1 3.9035 3.0688 -2.1660 29 1 5.2603 2.9813 1.5197 30 1 3.9572 4.0776 1.0016 31 1 5.2732 4.6920 -1.0083 32 1 6.5763 3.5956 -0.4901 33 1 6.8506 4.9064 1.5962 34 1 5.5476 6.0032 1.0787 35 1 6.8624 6.6182 -0.9311 36 1 8.1659 5.5218 -0.4142 37 1 9.9243 8.6267 -1.3241 38 1 3.8650 0.4214 0.5625 39 1 3.3609 1.7491 1.6453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385344948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = -36.551697 kcal Electronic energy + Delta-G solvation = -15427.180169 eV Core-core repulsion = 12981.744624 eV Total energy + Delta-G solvation = -2445.435545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29429 -37.12234 -35.87771 -34.30686 -31.94163 -30.03266 -29.03536 -26.34536 -25.18255 -23.62535 -21.96915 -21.58865 -21.36108 -18.44394 -17.05381 -16.97521 -16.50135 -16.39697 -16.16727 -15.11164 -14.79669 -14.59933 -14.42404 -14.01165 -13.76283 -13.50317 -13.26459 -12.97322 -12.81526 -12.60176 -12.27453 -12.23000 -12.13705 -12.06060 -11.88120 -11.76696 -11.35523 -11.29294 -10.97402 -10.56283 -9.45762 -9.28206 -8.20114 -6.31777 1.39383 1.40051 1.53567 2.40719 2.91168 3.12534 3.28021 3.54642 3.82533 4.06967 4.10809 4.22120 4.35995 4.44037 4.50816 4.54789 4.57397 4.63508 4.71580 4.82445 4.86962 4.92744 4.96035 5.02074 5.04100 5.19433 5.24938 5.27903 5.35839 5.55013 5.77158 5.86594 6.02627 6.03087 6.12876 6.25664 6.42231 6.86055 7.37620 8.92101 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.081432 B = 0.003665 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.762303 B = 7637.973810 C = 7777.094008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.069 3.931 4 H 0.053 0.947 5 C -0.110 4.110 6 C 0.039 3.961 7 N -0.541 5.541 8 C 0.062 3.938 9 C -0.101 4.101 10 C -0.096 4.096 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.042 3.958 21 H 0.080 0.920 22 H 0.025 0.975 23 H 0.061 0.939 24 H 0.350 0.650 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.050 0.950 35 H -0.012 1.012 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.293 -14.547 3.394 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.042 4.042 4 H 0.071 0.929 5 C -0.149 4.149 6 C -0.089 4.089 7 N -0.265 5.265 8 C -0.066 4.066 9 C -0.140 4.140 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.582 4.582 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.086 4.086 21 H 0.099 0.901 22 H 0.044 0.956 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.730 -14.814 2.381 22.473 hybrid contribution -0.125 1.593 1.355 2.095 sum -16.854 -13.221 3.736 21.745 Atomic orbital electron populations 1.22274 0.86774 1.02702 1.00451 1.60433 1.08747 1.12615 1.50411 1.22739 0.94952 0.90169 0.96356 0.92912 1.22686 0.97691 0.97839 0.96640 1.23087 0.93441 0.96713 0.95686 1.63509 1.34138 1.16010 1.12866 1.22259 0.96794 0.92113 0.95419 1.21443 0.98088 0.96258 0.98166 1.21406 0.97818 0.96138 0.98098 1.19015 0.93597 0.93989 0.94789 1.21775 1.23348 1.14547 0.98532 0.92146 1.26045 0.97040 1.00565 0.96484 1.70119 1.32518 1.39193 1.15710 0.85364 0.78105 0.78341 0.79020 1.18483 1.20282 1.20297 1.23012 0.91720 0.97875 0.96033 0.90133 0.95605 0.91990 0.83107 0.90432 0.90264 0.93683 0.90832 0.90417 0.94512 0.93208 0.92812 0.92923 0.93172 0.99331 0.99297 0.92762 0.89615 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 127.69 1.35 1.69 16 2 N -0.69 -10.74 6.70 -508.46 -3.40 -14.15 16 3 C 0.07 1.24 3.27 46.10 0.15 1.39 16 4 H 0.05 0.95 7.83 -2.39 -0.02 0.93 16 5 C -0.11 -2.18 6.76 31.98 0.22 -1.96 16 6 C 0.04 0.94 5.78 86.77 0.50 1.44 16 7 N -0.54 -14.14 5.16 -885.53 -4.57 -18.71 16 8 C 0.06 1.77 4.56 86.30 0.39 2.16 16 9 C -0.10 -3.63 5.26 30.60 0.16 -3.47 16 10 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -31.96 9.11 25.60 0.23 -31.72 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 15 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 16 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 C 0.04 0.85 6.37 86.65 0.55 1.41 16 21 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.03 0.30 8.08 -2.39 -0.02 0.28 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.35 4.53 8.40 -89.69 -0.75 3.78 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.10 7.62 -2.39 -0.02 1.09 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.08 2.10 8.03 -2.39 -0.02 2.09 16 30 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 31 H 0.05 1.81 7.49 -2.39 -0.02 1.80 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.09 1.72 7.90 -2.39 -0.02 1.71 16 39 H 0.06 1.15 7.55 -2.39 -0.02 1.13 16 Total: -1.00 -65.71 311.51 -1.11 -66.82 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.23 Total: 8.44 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.33 Total: -31.35 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -7.69 Total: -91.01 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.71 -1.11 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385344948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.270 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds