Wall clock time and date at job start Mon Mar 30 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99671 * 2 1 4 4 C 1.52996 * 109.47082 * 293.95203 * 3 2 1 5 5 C 1.53002 * 109.47079 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47186 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46760 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00354 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99747 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99956 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00275 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46897 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47422 * 120.00108 * 11 9 7 14 14 H 1.48499 * 109.46973 * 240.00079 * 11 9 7 15 15 C 1.46902 * 111.00047 * 123.95021 * 2 1 3 16 16 C 1.53788 * 113.61100 * 73.23688 * 15 2 1 17 17 C 1.54052 * 86.98228 * 140.02011 * 16 15 2 18 18 N 1.46898 * 113.61408 * 89.11540 * 17 16 15 19 19 C 1.53777 * 87.07702 * 334.56597 * 17 16 15 20 20 H 1.08997 * 109.47382 * 302.16823 * 1 2 3 21 21 H 1.08997 * 109.47109 * 62.16871 * 1 2 3 22 22 H 1.08995 * 109.46657 * 182.16652 * 1 2 3 23 23 H 1.08999 * 109.47297 * 53.95697 * 3 2 1 24 24 H 1.09005 * 109.47093 * 173.95358 * 3 2 1 25 25 H 1.09001 * 109.47249 * 299.99900 * 4 3 2 26 26 H 1.08996 * 109.47564 * 60.00293 * 4 3 2 27 27 H 1.08999 * 109.47305 * 300.00497 * 5 4 3 28 28 H 1.09005 * 109.47087 * 60.00159 * 5 4 3 29 29 H 1.08998 * 109.46775 * 300.00150 * 6 5 4 30 30 H 1.08995 * 109.46944 * 60.00204 * 6 5 4 31 31 H 0.97006 * 119.99878 * 180.02562 * 10 9 7 32 32 H 1.08996 * 112.85256 * 302.04599 * 15 2 1 33 33 H 1.08998 * 113.61055 * 254.61490 * 16 15 2 34 34 H 1.08998 * 113.61021 * 25.51408 * 16 15 2 35 35 H 1.08998 * 113.69087 * 220.01063 * 17 16 15 36 36 H 1.00908 * 110.99891 * 82.50679 * 18 17 16 37 37 H 1.00897 * 111.00117 * 206.45969 * 18 17 16 38 38 H 1.08991 * 113.61904 * 270.88174 * 19 17 16 39 39 H 1.09008 * 113.61156 * 139.97864 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1791 3.4860 -1.3180 6 6 1.8157 4.1718 -2.6366 7 6 2.3557 5.5788 -2.6365 8 1 2.9037 5.9468 -1.7817 9 6 2.1502 6.3961 -3.7276 10 7 1.4833 5.9477 -4.7688 11 14 2.8201 8.1398 -3.7280 12 1 3.5280 8.3983 -2.4484 13 1 3.7664 8.3064 -4.8602 14 1 1.6979 9.1012 -3.8752 15 6 1.9955 -0.7659 1.1376 16 6 1.8368 -2.2876 0.9820 17 6 3.2430 -2.4153 1.5981 18 7 3.2366 -2.5124 3.0638 19 6 3.5149 -0.9947 1.0759 20 1 -0.3634 0.5471 0.8699 21 1 -0.3633 0.4798 -0.9088 22 1 -0.3632 -1.0269 0.0388 23 1 1.5611 1.9273 0.8309 24 1 3.0797 1.3445 0.1083 25 1 2.0658 1.5015 -2.1492 26 1 0.5472 2.0844 -1.4266 27 1 1.7444 4.0417 -0.4871 28 1 3.2634 3.4595 -1.2095 29 1 2.2508 3.6160 -3.4671 30 1 0.7315 4.1984 -2.7455 31 1 1.3390 6.5226 -5.5366 32 1 1.6497 -0.3871 2.0993 33 1 1.0466 -2.7099 1.6026 34 1 1.7832 -2.6171 -0.0557 35 1 3.8603 -3.1796 1.1259 36 1 3.0550 -3.4589 3.3628 37 1 4.1025 -2.1702 3.4526 38 1 3.9192 -0.9714 0.0640 39 1 4.0786 -0.3740 1.7724 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385780923.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:24 Heat of formation + Delta-G solvation = -18.792923 kcal Electronic energy + Delta-G solvation = -15510.882298 eV Core-core repulsion = 13066.216831 eV Total energy + Delta-G solvation = -2444.665467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50859 -37.64139 -35.86296 -34.05336 -32.09903 -30.24251 -27.82021 -26.21860 -26.11212 -23.75134 -22.07125 -21.57130 -19.82899 -18.42861 -17.37633 -16.59405 -16.45971 -16.42528 -16.24939 -15.52576 -15.28735 -14.62419 -14.26777 -13.82871 -13.66098 -13.27627 -13.14277 -12.95428 -12.73170 -12.49738 -12.30426 -12.27465 -12.08506 -11.96435 -11.72632 -11.35148 -11.25340 -11.13093 -10.89032 -10.55792 -9.59267 -9.24694 -8.19733 -6.31302 1.39643 1.40244 1.53874 2.41118 3.01461 3.12861 3.48491 3.61148 3.80343 3.91727 4.07592 4.19459 4.30273 4.47144 4.56715 4.57883 4.65477 4.68853 4.86916 4.88853 4.90676 4.93778 5.04506 5.06204 5.20996 5.24973 5.30094 5.36513 5.40791 5.55737 5.77843 5.87053 6.12273 6.22863 6.26634 6.33932 6.61041 6.86295 7.38028 8.92405 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.058254 B = 0.003945 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.535169 B = 7095.108934 C = 7362.914124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.068 3.932 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.024 3.976 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.061 3.939 16 C -0.113 4.113 17 C 0.070 3.930 18 N -0.841 5.841 19 C -0.125 4.125 20 H 0.022 0.978 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.027 0.973 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.051 0.949 29 H -0.010 1.010 30 H -0.012 1.012 31 H 0.264 0.736 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.353 0.647 37 H 0.351 0.649 38 H 0.087 0.913 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 -17.305 14.202 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.060 4.060 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.013 4.013 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.185 1.185 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.047 4.047 16 C -0.151 4.151 17 C -0.042 4.042 18 N -0.374 5.374 19 C -0.163 4.163 20 H 0.040 0.960 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.106 0.894 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.143 -16.993 13.587 21.862 hybrid contribution 0.539 0.820 0.132 0.991 sum 2.682 -16.173 13.719 21.377 Atomic orbital electron populations 1.22364 0.87362 1.02188 1.00490 1.62296 1.08231 1.13496 1.42543 1.21977 1.00141 0.87845 0.96062 1.21479 1.00235 0.94846 0.97426 1.21407 0.99738 0.94655 0.97688 1.19013 0.94673 0.94424 0.93222 1.21774 1.34982 0.99262 1.02207 0.92218 1.26033 0.95498 1.03439 0.95116 1.70119 1.42271 1.38270 1.06837 0.85367 0.78210 0.78769 0.78503 1.18542 1.20234 1.20302 1.23047 0.96081 0.94369 0.91251 1.23020 0.97079 0.94096 1.00916 1.22225 0.96937 0.96402 0.88670 1.58484 1.42418 1.29422 1.07049 1.23072 0.95321 0.96448 1.01507 0.95956 0.91919 0.90305 0.95438 0.90634 0.92621 0.93030 0.93390 0.93010 0.99183 0.99313 0.92767 0.92496 0.91139 0.89313 0.92275 0.83331 0.83491 0.89419 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.23 127.69 1.18 1.77 16 2 N -0.54 -14.34 4.70 -893.95 -4.21 -18.54 16 3 C 0.07 2.01 4.88 86.30 0.42 2.43 16 4 C -0.10 -3.68 5.14 30.59 0.16 -3.52 16 5 C -0.10 -4.16 5.15 30.60 0.16 -4.01 16 6 C 0.02 1.31 4.97 29.85 0.15 1.46 16 7 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 10 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 11 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.06 1.35 3.08 45.44 0.14 1.49 16 16 C -0.11 -2.07 7.05 31.22 0.22 -1.85 16 17 C 0.07 1.11 5.05 45.53 0.23 1.34 16 18 N -0.84 -11.31 9.47 -166.12 -1.57 -12.88 16 19 C -0.13 -2.47 6.57 31.12 0.20 -2.27 16 20 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 21 H 0.06 1.67 6.57 -2.39 -0.02 1.66 16 22 H 0.08 1.66 7.61 -2.39 -0.02 1.64 16 23 H 0.03 0.82 8.11 -2.39 -0.02 0.80 16 24 H 0.08 2.17 7.20 -2.38 -0.02 2.15 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.89 6.60 -2.39 -0.02 1.87 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.15 8.14 -2.38 -0.02 2.14 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 31 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.35 3.49 9.08 -89.69 -0.81 2.68 16 37 H 0.35 3.90 9.07 -89.70 -0.81 3.09 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -65.75 311.98 -0.53 -66.29 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -0.62 Total: 10.80 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.55 Total: -34.78 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -5.49 Total: -89.56 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.75 -0.53 -66.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385780923.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.496 kcal (2) G-P(sol) polarization free energy of solvation -65.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds