Wall clock time and date at job start Mon Mar 30 2020 03:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86805 * 119.99719 * 2 1 4 4 H 1.48505 * 109.46943 * 264.51179 * 3 2 1 5 5 H 1.48499 * 109.47264 * 24.50969 * 3 2 1 6 6 H 1.48497 * 109.47305 * 144.51365 * 3 2 1 7 7 C 1.39714 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99875 * 349.86613 * 7 2 1 9 9 C 1.41156 * 120.00380 * 169.86418 * 7 2 1 10 10 C 1.37697 * 122.86411 * 172.54524 * 9 7 2 11 11 S 1.70991 * 108.83619 * 180.02562 * 10 9 7 12 12 C 1.75895 * 90.81464 * 359.97438 * 11 10 9 13 13 C 1.50699 * 124.99190 * 180.02562 * 12 11 10 14 14 C 1.53034 * 113.15474 * 40.34914 * 13 12 11 15 15 S 1.81425 * 89.89168 * 211.85139 * 14 13 12 16 16 C 1.53039 * 113.14985 * 299.97227 * 13 12 11 17 17 N 1.28795 * 110.01117 * 0.02562 * 12 11 10 18 18 H 0.97002 * 120.00428 * 359.97438 * 1 2 3 19 19 H 1.07995 * 125.58342 * 0.03101 * 10 9 7 20 20 H 1.09001 * 112.48948 * 170.19396 * 13 12 11 21 21 H 1.09004 * 113.15243 * 327.11254 * 14 13 12 22 22 H 1.09003 * 113.14894 * 96.58943 * 14 13 12 23 23 H 1.09004 * 113.14837 * 263.40584 * 16 13 12 24 24 H 1.08997 * 113.14860 * 32.89137 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.6076 1.9796 -1.3937 5 1 1.3884 2.6834 0.5808 6 1 3.4789 1.4766 0.8127 7 6 2.0088 -1.2099 0.0005 8 1 1.4815 -2.1379 0.1655 9 6 3.4039 -1.2195 -0.2146 10 6 4.1730 -2.3537 -0.0793 11 16 5.8016 -1.9602 -0.4207 12 6 5.3588 -0.2860 -0.7288 13 6 6.3216 0.8038 -1.1241 14 6 7.3784 0.3380 -2.1283 15 16 8.5690 1.5038 -1.4109 16 6 7.4195 1.0428 -0.0851 17 7 4.0909 -0.1285 -0.5668 18 1 -0.4851 0.8400 0.0004 19 1 3.8074 -3.3316 0.1971 20 1 5.8135 1.7187 -1.4289 21 1 7.6662 -0.7048 -1.9949 22 1 7.1199 0.5708 -3.1613 23 1 7.1955 1.8660 0.5934 24 1 7.7151 0.1358 0.4423 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405081971.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:38 Heat of formation + Delta-G solvation = 30.384153 kcal Electronic energy + Delta-G solvation = -11413.647374 eV Core-core repulsion = 9351.402181 eV Total energy + Delta-G solvation = -2062.245193 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 227.013 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.35612 -37.70426 -35.22104 -31.45034 -28.12092 -27.32326 -25.74655 -22.19495 -21.05746 -19.82749 -17.87358 -17.16552 -17.01934 -16.53941 -15.52335 -15.18599 -14.73679 -14.13004 -14.02198 -13.89966 -13.73693 -13.03923 -12.83729 -12.64230 -12.35891 -11.93393 -11.80662 -11.36693 -11.27454 -10.19883 -9.93067 -9.52671 -8.89315 -8.85676 -6.56466 0.03627 0.70789 0.73165 0.86444 1.37076 1.41752 1.47727 1.64547 2.01605 2.35446 3.11806 3.22676 3.41862 3.71698 3.98203 4.30641 4.46277 4.63039 4.63625 4.86380 4.96180 5.05495 5.39352 6.00171 6.42190 6.54918 7.19022 8.15471 Molecular weight = 227.01amu Principal moments of inertia in cm(-1) A = 0.036582 B = 0.010130 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.222740 B = 2763.439063 C = 3379.788152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 1.032 2.968 4 H -0.273 1.273 5 H -0.312 1.312 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.063 0.937 9 C 0.189 3.811 10 C -0.458 4.458 11 S 0.121 5.879 12 C 0.077 3.923 13 C -0.021 4.021 14 C -0.066 4.066 15 S -0.290 6.290 16 C -0.068 4.068 17 N -0.508 5.508 18 H 0.293 0.707 19 H 0.145 0.855 20 H 0.131 0.869 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.112 0.888 24 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.687 3.002 -2.150 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.172 4.172 3 Si 0.862 3.138 4 H -0.199 1.199 5 H -0.243 1.243 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.067 3.933 10 C -0.597 4.597 11 S 0.371 5.629 12 C -0.205 4.205 13 C -0.045 4.045 14 C -0.215 4.215 15 S -0.063 6.063 16 C -0.218 4.218 17 N -0.228 5.228 18 H 0.103 0.897 19 H 0.162 0.838 20 H 0.149 0.851 21 H 0.138 0.862 22 H 0.137 0.863 23 H 0.130 0.870 24 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.256 3.773 -2.542 16.880 hybrid contribution -2.482 -0.541 0.534 2.596 sum 13.774 3.232 -2.008 14.290 Atomic orbital electron populations 1.69755 1.09147 1.31575 1.37422 1.26919 0.95580 1.05170 0.89536 0.84211 0.76341 0.73536 0.79737 1.19933 1.24300 1.18674 1.18808 0.89932 0.95135 1.44925 0.91922 1.18078 0.94515 0.86238 0.94446 1.25469 0.97243 1.03651 1.33379 1.82109 1.07646 1.04718 1.68437 1.27751 0.93146 0.97534 1.02061 1.21336 0.91825 0.95822 0.95488 1.24483 0.91736 1.01379 1.03884 1.88900 1.45195 1.58591 1.13633 1.24497 0.91926 1.06327 0.99046 1.66059 1.06966 1.30763 1.18974 0.89659 0.83772 0.85134 0.86175 0.86288 0.86964 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.40 13.94 21.79 0.30 -48.09 14 2 C 0.04 2.43 5.51 85.17 0.47 2.90 14 3 Si 1.03 48.52 25.63 68.60 1.76 50.28 14 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 14 5 H -0.31 -14.00 7.11 99.48 0.71 -13.29 14 6 H -0.26 -12.15 6.44 99.48 0.64 -11.51 14 7 C -0.45 -26.32 9.79 23.34 0.23 -26.09 14 8 H 0.06 3.87 8.06 -2.91 -0.02 3.85 14 9 C 0.19 9.79 6.21 39.45 0.25 10.03 14 10 C -0.46 -20.98 10.98 67.69 0.74 -20.24 14 11 S 0.12 4.12 22.01 -56.49 -1.24 2.87 14 12 C 0.08 2.81 6.67 88.55 0.59 3.40 14 13 C -0.02 -0.56 3.95 -11.52 -0.05 -0.60 14 14 C -0.07 -1.42 7.43 71.99 0.54 -0.89 14 15 S -0.29 -6.59 24.80 -56.49 -1.40 -8.00 14 16 C -0.07 -1.56 7.48 72.00 0.54 -1.02 14 17 N -0.51 -23.66 5.37 -180.35 -0.97 -24.63 14 18 H 0.29 15.08 8.30 -92.71 -0.77 14.31 14 19 H 0.14 6.52 8.06 -2.91 -0.02 6.49 14 20 H 0.13 3.60 8.14 -2.39 -0.02 3.58 14 21 H 0.12 2.40 7.24 -2.39 -0.02 2.39 14 22 H 0.12 2.27 8.14 -2.39 -0.02 2.25 14 23 H 0.11 2.38 8.14 -2.38 -0.02 2.36 14 24 H 0.12 2.54 7.97 -2.39 -0.02 2.52 14 Total: -1.00 -61.91 234.48 2.90 -59.02 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 1.14 Total: 1.05 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.31 Total: -32.50 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.67 Total: -72.72 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.76 Total: 50.28 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.64 Total: -5.12 kcal Total: -61.91 2.90 -59.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405081971.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.401 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds