Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47122 * 2 1 4 4 C 1.46897 * 110.99936 * 74.84976 * 3 2 1 5 5 C 1.50700 * 109.47397 * 287.04333 * 4 3 2 6 6 H 1.08003 * 119.99792 * 359.19279 * 5 4 3 7 7 C 1.37874 * 120.00246 * 179.18372 * 5 4 3 8 8 N 1.31512 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99919 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47059 * 89.99757 * 9 7 5 11 11 H 1.48495 * 109.47012 * 209.99726 * 9 7 5 12 12 H 1.48502 * 109.46842 * 329.99988 * 9 7 5 13 13 C 1.46906 * 110.99896 * 198.80522 * 3 2 1 14 14 H 1.09001 * 112.84500 * 204.48928 * 13 3 2 15 15 C 1.53776 * 113.61454 * 335.69071 * 13 3 2 16 16 C 1.53786 * 87.07799 * 139.98044 * 15 13 3 17 17 H 1.09000 * 113.61371 * 89.20291 * 16 15 13 18 18 N 1.46898 * 113.61491 * 220.01471 * 16 15 13 19 19 C 1.53777 * 87.08271 * 334.56717 * 16 15 13 20 20 C 1.52998 * 113.61240 * 270.88428 * 19 16 15 21 21 C 1.53004 * 113.61352 * 139.97990 * 19 16 15 22 22 H 1.09006 * 109.47141 * 291.69764 * 1 2 3 23 23 H 1.09002 * 109.47727 * 51.69616 * 1 2 3 24 24 H 1.09000 * 109.47539 * 171.70087 * 1 2 3 25 25 H 1.09000 * 109.47172 * 240.00058 * 2 1 3 26 26 H 1.09003 * 109.47615 * 120.00067 * 2 1 3 27 27 H 1.08998 * 109.47295 * 47.05171 * 4 3 2 28 28 H 1.09003 * 109.46848 * 167.04719 * 4 3 2 29 29 H 0.97007 * 119.99901 * 179.97438 * 8 7 5 30 30 H 1.09002 * 113.61703 * 254.52897 * 15 13 3 31 31 H 1.08999 * 113.61341 * 25.35111 * 15 13 3 32 32 H 1.00903 * 111.00653 * 280.50232 * 18 16 15 33 33 H 1.00909 * 110.99847 * 44.45393 * 18 16 15 34 34 H 1.09004 * 109.46986 * 140.94615 * 20 19 16 35 35 H 1.09007 * 109.46763 * 260.93887 * 20 19 16 36 36 H 1.08994 * 109.47455 * 20.94455 * 20 19 16 37 37 H 1.09002 * 109.46641 * 322.50446 * 21 19 16 38 38 H 1.08997 * 109.46643 * 82.50054 * 21 19 16 39 39 H 1.09001 * 109.47131 * 202.50053 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8572 2.0008 1.3237 5 6 0.3991 2.2949 1.5655 6 1 -0.3322 2.0610 0.8059 7 6 -0.0015 2.8625 2.7564 8 7 -1.2741 3.1187 2.9676 9 14 1.2633 3.2676 4.0701 10 1 1.7637 4.6507 3.8657 11 1 0.6351 3.1617 5.4114 12 1 2.3966 2.3124 3.9773 13 6 3.4191 1.4486 -0.4421 14 1 3.9409 2.3301 -0.0697 15 6 4.1933 0.1375 -0.2267 16 6 4.8478 0.3912 -1.5950 17 1 5.7618 0.9825 -1.5389 18 7 5.0030 -0.8229 -2.4073 19 6 3.5995 1.2155 -1.9514 20 6 2.4780 0.3876 -2.5820 21 6 3.9111 2.4917 -2.7358 22 1 -0.3634 0.3800 0.9549 23 1 -0.3634 0.6370 -0.8064 24 1 -0.3634 -1.0169 -0.1483 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2218 1.3167 2.0900 28 1 2.4267 2.9293 1.3649 29 1 -1.5559 3.5177 3.8056 30 1 4.8947 0.1764 0.6067 31 1 3.5565 -0.7468 -0.2031 32 1 5.8049 -1.3577 -2.1089 33 1 4.1647 -1.3841 -2.3827 34 1 1.5156 0.7302 -2.2018 35 1 2.5038 0.5065 -3.6653 36 1 2.6155 -0.6635 -2.3284 37 1 4.8357 2.9313 -2.3617 38 1 4.0252 2.2498 -3.7924 39 1 3.0944 3.2028 -2.6119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405222828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = 43.151152 kcal Electronic energy + Delta-G solvation = -17065.655651 eV Core-core repulsion = 14623.676281 eV Total energy + Delta-G solvation = -2441.979370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48179 -35.80037 -32.49327 -31.84740 -30.57372 -29.29163 -27.49970 -26.69045 -22.95333 -22.46190 -21.72758 -19.68957 -17.99424 -16.74736 -16.01879 -15.43510 -15.13928 -14.25144 -14.02266 -13.63589 -13.38467 -12.93906 -12.88607 -12.46170 -12.06188 -11.69748 -11.65756 -11.55691 -11.51930 -11.01806 -10.88989 -10.73226 -10.53882 -10.35008 -10.17088 -9.99498 -9.93748 -9.30580 -8.93928 -8.50718 -8.48995 -7.26519 -6.02338 -3.97595 3.28221 3.35995 3.37884 4.43470 4.46919 4.73158 4.78057 4.93294 5.03184 5.26052 5.32303 5.53475 5.69195 5.79747 5.82935 5.87099 6.05573 6.07386 6.14432 6.18962 6.20608 6.33131 6.42266 6.47165 6.56135 6.64048 6.79670 6.83534 6.93886 7.04789 7.17808 7.45991 7.47162 7.67383 7.99902 8.13122 8.70492 9.07880 9.59633 11.09511 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035571 B = 0.008125 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.969299 B = 3445.517798 C = 3670.563779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 N -0.509 5.509 4 C 0.161 3.839 5 C -0.509 4.509 6 H 0.097 0.903 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.869 3.131 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.073 3.927 14 H 0.092 0.908 15 C -0.218 4.218 16 C 0.077 3.923 17 H 0.097 0.903 18 N -0.838 5.838 19 C -0.066 4.066 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.018 0.982 27 H -0.012 1.012 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.334 0.666 33 H 0.341 0.659 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.852 -6.511 -8.214 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.231 5.231 4 C 0.035 3.965 5 C -0.547 4.547 6 H 0.114 0.886 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.697 3.303 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.195 1.195 13 C -0.038 4.038 14 H 0.110 0.890 15 C -0.259 4.259 16 C -0.035 4.035 17 H 0.115 0.885 18 N -0.367 5.367 19 C -0.067 4.067 20 C -0.181 4.181 21 C -0.186 4.186 22 H 0.116 0.884 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.006 0.994 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.515 -5.667 -9.024 14.971 hybrid contribution 1.079 -0.624 2.476 2.772 sum 11.594 -6.292 -6.548 14.727 Atomic orbital electron populations 1.22174 0.94836 0.98683 1.05561 1.22374 0.96784 0.89473 0.99020 1.61851 1.14877 1.16838 1.29535 1.20249 0.98506 0.93292 0.84430 1.21359 0.91476 1.39528 1.02317 0.88574 1.24909 0.94929 0.95529 0.98034 1.69886 1.14612 1.44202 1.25343 0.86951 0.82334 0.79192 0.81804 1.20293 1.21332 1.19469 1.23147 0.89712 0.95944 0.94992 0.89040 1.24588 1.01023 1.01366 0.98926 1.22937 0.97678 0.92443 0.90436 0.88542 1.58755 1.08851 1.10006 1.59076 1.22041 0.94211 0.95330 0.95167 1.21725 0.99313 0.97714 0.99334 1.21659 1.00987 0.96724 0.99187 0.88390 0.92788 0.95198 0.91113 0.96348 0.99447 0.96293 0.92769 0.92359 0.89339 0.85343 0.84440 0.89809 0.93310 0.93292 0.93329 0.93008 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.50 37.15 0.32 -2.75 16 2 C 0.05 0.94 3.06 -3.83 -0.01 0.93 16 3 N -0.51 -10.29 3.94 -227.11 -0.89 -11.18 16 4 C 0.16 3.87 3.80 -4.98 -0.02 3.85 16 5 C -0.51 -14.03 7.78 -34.44 -0.27 -14.30 16 6 H 0.10 2.82 5.65 -52.48 -0.30 2.52 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.87 21.49 27.48 -169.99 -4.67 16.82 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.49 6.52 56.52 0.37 -6.12 16 13 C 0.07 1.22 3.52 -66.90 -0.24 0.99 16 14 H 0.09 1.58 7.64 -51.93 -0.40 1.18 16 15 C -0.22 -3.13 6.62 -25.92 -0.17 -3.30 16 16 C 0.08 0.98 4.48 -66.90 -0.30 0.68 16 17 H 0.10 1.18 7.97 -51.93 -0.41 0.77 16 18 N -0.84 -9.27 9.33 -3.98 -0.04 -9.31 16 19 C -0.07 -0.94 1.34 -153.70 -0.21 -1.15 16 20 C -0.12 -1.74 7.08 37.16 0.26 -1.48 16 21 C -0.13 -1.74 9.15 37.16 0.34 -1.40 16 22 H 0.10 2.31 5.34 -51.93 -0.28 2.04 16 23 H 0.05 1.09 7.84 -51.93 -0.41 0.68 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.13 3.11 -51.93 -0.16 0.96 16 26 H 0.02 0.36 7.31 -51.93 -0.38 -0.02 16 27 H -0.01 -0.30 6.81 -51.93 -0.35 -0.65 16 28 H 0.02 0.46 7.17 -51.93 -0.37 0.09 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.29 5.25 -51.93 -0.27 1.02 16 32 H 0.33 3.11 9.08 -39.29 -0.36 2.76 16 33 H 0.34 3.67 6.59 -39.29 -0.26 3.41 16 34 H 0.08 1.37 5.87 -51.93 -0.30 1.06 16 35 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 36 H 0.05 0.63 4.35 -51.93 -0.23 0.40 16 37 H 0.05 0.60 7.95 -51.93 -0.41 0.19 16 38 H 0.05 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 282.81 15.07 4.26 4.26 Total: -1.00 -29.05 282.81 -7.11 -36.16 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.15 Total: 5.83 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.39 Total: -16.11 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.16 Total: -46.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.05 -7.11 -36.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405222828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.311 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds