Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47122 * 2 1 4 4 C 1.46897 * 110.99936 * 74.84976 * 3 2 1 5 5 C 1.50700 * 109.47397 * 287.04333 * 4 3 2 6 6 H 1.08003 * 119.99792 * 359.19279 * 5 4 3 7 7 C 1.37874 * 120.00246 * 179.18372 * 5 4 3 8 8 N 1.31512 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99919 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47059 * 89.99757 * 9 7 5 11 11 H 1.48495 * 109.47012 * 209.99726 * 9 7 5 12 12 H 1.48502 * 109.46842 * 329.99988 * 9 7 5 13 13 C 1.46906 * 110.99896 * 198.80522 * 3 2 1 14 14 H 1.09001 * 112.84500 * 204.48928 * 13 3 2 15 15 C 1.53776 * 113.61454 * 335.69071 * 13 3 2 16 16 C 1.53786 * 87.07799 * 139.98044 * 15 13 3 17 17 H 1.09000 * 113.61371 * 89.20291 * 16 15 13 18 18 N 1.46898 * 113.61491 * 220.01471 * 16 15 13 19 19 C 1.53777 * 87.08271 * 334.56717 * 16 15 13 20 20 C 1.52998 * 113.61240 * 270.88428 * 19 16 15 21 21 C 1.53004 * 113.61352 * 139.97990 * 19 16 15 22 22 H 1.09006 * 109.47141 * 291.69764 * 1 2 3 23 23 H 1.09002 * 109.47727 * 51.69616 * 1 2 3 24 24 H 1.09000 * 109.47539 * 171.70087 * 1 2 3 25 25 H 1.09000 * 109.47172 * 240.00058 * 2 1 3 26 26 H 1.09003 * 109.47615 * 120.00067 * 2 1 3 27 27 H 1.08998 * 109.47295 * 47.05171 * 4 3 2 28 28 H 1.09003 * 109.46848 * 167.04719 * 4 3 2 29 29 H 0.97007 * 119.99901 * 179.97438 * 8 7 5 30 30 H 1.09002 * 113.61703 * 254.52897 * 15 13 3 31 31 H 1.08999 * 113.61341 * 25.35111 * 15 13 3 32 32 H 1.00903 * 111.00653 * 280.50232 * 18 16 15 33 33 H 1.00909 * 110.99847 * 44.45393 * 18 16 15 34 34 H 1.09004 * 109.46986 * 140.94615 * 20 19 16 35 35 H 1.09007 * 109.46763 * 260.93887 * 20 19 16 36 36 H 1.08994 * 109.47455 * 20.94455 * 20 19 16 37 37 H 1.09002 * 109.46641 * 322.50446 * 21 19 16 38 38 H 1.08997 * 109.46643 * 82.50054 * 21 19 16 39 39 H 1.09001 * 109.47131 * 202.50053 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8572 2.0008 1.3237 5 6 0.3991 2.2949 1.5655 6 1 -0.3322 2.0610 0.8059 7 6 -0.0015 2.8625 2.7564 8 7 -1.2741 3.1187 2.9676 9 14 1.2633 3.2676 4.0701 10 1 1.7637 4.6507 3.8657 11 1 0.6351 3.1617 5.4114 12 1 2.3966 2.3124 3.9773 13 6 3.4191 1.4486 -0.4421 14 1 3.9409 2.3301 -0.0697 15 6 4.1933 0.1375 -0.2267 16 6 4.8478 0.3912 -1.5950 17 1 5.7618 0.9825 -1.5389 18 7 5.0030 -0.8229 -2.4073 19 6 3.5995 1.2155 -1.9514 20 6 2.4780 0.3876 -2.5820 21 6 3.9111 2.4917 -2.7358 22 1 -0.3634 0.3800 0.9549 23 1 -0.3634 0.6370 -0.8064 24 1 -0.3634 -1.0169 -0.1483 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2218 1.3167 2.0900 28 1 2.4267 2.9293 1.3649 29 1 -1.5559 3.5177 3.8056 30 1 4.8947 0.1764 0.6067 31 1 3.5565 -0.7468 -0.2031 32 1 5.8049 -1.3577 -2.1089 33 1 4.1647 -1.3841 -2.3827 34 1 1.5156 0.7302 -2.2018 35 1 2.5038 0.5065 -3.6653 36 1 2.6155 -0.6635 -2.3284 37 1 4.8357 2.9313 -2.3617 38 1 4.0252 2.2498 -3.7924 39 1 3.0944 3.2028 -2.6119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405222828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = 22.230262 kcal Electronic energy + Delta-G solvation = -17066.562849 eV Core-core repulsion = 14623.676281 eV Total energy + Delta-G solvation = -2442.886568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.71337 -37.34952 -34.50384 -32.95471 -31.96707 -30.82843 -29.02821 -28.08831 -24.32066 -23.99905 -23.19467 -21.23593 -19.39869 -18.55531 -17.12160 -16.89292 -16.55138 -15.98905 -15.57847 -14.96743 -14.75241 -14.54451 -14.19482 -13.96087 -13.37772 -13.18487 -13.08424 -13.04288 -12.89614 -12.64032 -12.42300 -12.24861 -12.17533 -11.90025 -11.75943 -11.46462 -11.18288 -10.97211 -10.76034 -10.60220 -9.46389 -8.83068 -8.22072 -6.21369 1.32129 1.33306 1.42751 2.35630 3.09143 3.18536 3.58921 3.61835 3.81085 3.96104 4.07452 4.31993 4.42686 4.56213 4.60608 4.65644 4.72074 4.78030 4.84942 4.94416 4.98142 4.99405 5.04572 5.12061 5.16994 5.24784 5.30404 5.38648 5.51868 5.60608 5.63702 5.79432 6.13136 6.28899 6.50444 6.68444 6.76200 6.85613 7.39491 8.92673 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035571 B = 0.008125 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.969299 B = 3445.517798 C = 3670.563779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.522 5.522 4 C 0.172 3.828 5 C -0.507 4.507 6 H 0.067 0.933 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.258 1.258 13 C 0.055 3.945 14 H 0.085 0.915 15 C -0.211 4.211 16 C 0.097 3.903 17 H 0.108 0.892 18 N -0.835 5.835 19 C -0.066 4.066 20 C -0.122 4.122 21 C -0.126 4.126 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.012 0.988 27 H -0.019 1.019 28 H 0.017 0.983 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.348 0.652 33 H 0.344 0.656 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.431 -7.590 -9.049 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 N -0.244 5.244 4 C 0.045 3.955 5 C -0.545 4.545 6 H 0.085 0.915 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.182 1.182 13 C -0.055 4.055 14 H 0.103 0.897 15 C -0.252 4.252 16 C -0.016 4.016 17 H 0.125 0.875 18 N -0.366 5.366 19 C -0.067 4.067 20 C -0.179 4.179 21 C -0.184 4.184 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.030 0.970 27 H -0.001 1.001 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.125 -6.765 -9.882 17.767 hybrid contribution 0.229 -0.325 2.628 2.658 sum 13.354 -7.090 -7.253 16.769 Atomic orbital electron populations 1.22014 0.96115 0.99855 1.02477 1.22410 0.95605 0.88920 1.00144 1.61760 1.17794 1.17723 1.27100 1.19989 0.95736 0.93345 0.86457 1.21624 0.93056 1.38305 1.01511 0.91547 1.25728 0.96787 0.95793 1.00576 1.70033 1.16768 1.45929 1.26192 0.85902 0.79995 0.79377 0.78771 1.19466 1.21053 1.18178 1.23344 0.87843 0.97247 0.97101 0.89722 1.24546 1.00714 0.99611 1.00362 1.22745 0.97059 0.92849 0.88939 0.87459 1.58712 1.09670 1.09824 1.58353 1.22059 0.95251 0.96115 0.93271 1.21677 0.97893 0.98377 0.99977 1.21646 1.00814 0.96019 0.99907 0.92835 0.93912 0.92298 0.87868 0.97014 1.00148 0.96447 0.92759 0.92145 0.89342 0.83791 0.84072 0.92341 0.92178 0.91850 0.92217 0.91797 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.50 71.98 0.61 -5.28 16 2 C 0.06 2.04 3.06 86.30 0.26 2.30 16 3 N -0.52 -20.91 3.94 -872.44 -3.44 -24.35 16 4 C 0.17 8.26 3.80 85.56 0.33 8.59 16 5 C -0.51 -28.77 7.78 25.60 0.20 -28.58 16 6 H 0.07 4.09 5.65 -2.91 -0.02 4.08 16 7 C 0.01 0.46 5.47 84.65 0.46 0.92 16 8 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 9 Si 0.93 44.72 27.48 68.60 1.89 46.61 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.26 -11.70 6.52 99.48 0.65 -11.05 16 13 C 0.05 1.75 3.52 45.44 0.16 1.91 16 14 H 0.08 2.81 7.64 -2.39 -0.02 2.79 16 15 C -0.21 -5.48 6.62 31.12 0.21 -5.28 16 16 C 0.10 2.11 4.48 45.44 0.20 2.31 16 17 H 0.11 2.18 7.97 -2.39 -0.02 2.16 16 18 N -0.83 -15.11 9.33 -166.49 -1.55 -16.66 16 19 C -0.07 -1.71 1.34 -51.66 -0.07 -1.78 16 20 C -0.12 -3.15 7.08 71.98 0.51 -2.64 16 21 C -0.13 -3.15 9.15 71.98 0.66 -2.49 16 22 H 0.05 2.63 5.34 -2.38 -0.01 2.61 16 23 H 0.04 1.76 7.84 -2.39 -0.02 1.74 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.10 3.06 3.11 -2.39 -0.01 3.05 16 26 H 0.01 0.44 7.31 -2.39 -0.02 0.42 16 27 H -0.02 -0.94 6.81 -2.39 -0.02 -0.95 16 28 H 0.02 0.84 7.17 -2.39 -0.02 0.82 16 29 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 2.30 5.25 -2.39 -0.01 2.29 16 32 H 0.35 5.01 9.08 -89.69 -0.81 4.20 16 33 H 0.34 6.01 6.59 -89.69 -0.59 5.42 16 34 H 0.06 1.83 5.87 -2.39 -0.01 1.82 16 35 H 0.06 1.42 7.91 -2.38 -0.02 1.40 16 36 H 0.06 1.42 4.35 -2.39 -0.01 1.41 16 37 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 38 H 0.06 1.43 8.03 -2.39 -0.02 1.41 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.74 282.81 0.32 -63.43 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.41 Total: 19.85 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.53 Total: -30.01 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.69 Total: -99.87 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.89 Total: 46.61 kcal Total: -63.74 0.32 -63.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405222828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.657 kcal (2) G-P(sol) polarization free energy of solvation -63.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds