Wall clock time and date at job start Mon Mar 30 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46890 * 2 1 4 4 C 1.36938 * 120.00212 * 272.92823 * 3 2 1 5 5 H 1.07999 * 119.99894 * 38.57903 * 4 3 2 6 6 C 1.38817 * 119.99983 * 218.58154 * 4 3 2 7 7 N 1.31619 * 119.99816 * 20.30115 * 6 4 3 8 8 Si 1.86794 * 120.00067 * 200.30154 * 6 4 3 9 9 H 1.48504 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47382 * 119.99921 * 8 6 4 11 11 H 1.48501 * 109.46896 * 240.00139 * 8 6 4 12 12 C 1.46505 * 119.99820 * 92.92691 * 3 2 1 13 13 C 1.52995 * 109.47093 * 270.00191 * 12 3 2 14 14 N 1.46899 * 109.46926 * 183.43804 * 13 12 3 15 15 C 1.47909 * 111.00032 * 185.30047 * 14 13 12 16 16 C 1.53995 * 107.05845 * 145.83779 * 15 14 13 17 17 C 1.54586 * 105.13961 * 358.77737 * 16 15 14 18 18 H 1.09001 * 110.72860 * 96.58009 * 17 16 15 19 19 C 1.53008 * 110.72445 * 219.68018 * 17 16 15 20 20 C 1.48733 * 111.04397 * 302.87204 * 14 13 12 21 21 H 1.09002 * 109.47698 * 59.99925 * 1 2 3 22 22 H 1.08999 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47408 * 299.99549 * 1 2 3 24 24 H 1.09002 * 109.47408 * 240.00451 * 2 1 3 25 25 H 1.08993 * 109.47712 * 120.00286 * 2 1 3 26 26 H 0.96997 * 119.99664 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46731 * 149.99791 * 12 3 2 28 28 H 1.09000 * 109.46993 * 30.00290 * 12 3 2 29 29 H 1.08996 * 109.47525 * 63.43433 * 13 12 3 30 30 H 1.09007 * 109.47224 * 303.43452 * 13 12 3 31 31 H 1.09001 * 109.91348 * 26.48578 * 15 14 13 32 32 H 1.08996 * 109.91605 * 265.19419 * 15 14 13 33 33 H 1.08998 * 110.30865 * 239.85426 * 16 15 14 34 34 H 1.09004 * 110.38458 * 117.73496 * 16 15 14 35 35 H 1.09003 * 109.46561 * 56.14655 * 19 17 16 36 36 H 1.09003 * 109.46999 * 296.15045 * 19 17 16 37 37 H 1.08995 * 109.47080 * 176.14908 * 19 17 16 38 38 H 1.09000 * 110.83659 * 81.96165 * 20 14 13 39 39 H 1.09005 * 110.58262 * 318.78034 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1894 2.0470 -1.1843 5 1 1.4790 1.9129 -1.9867 6 6 3.2759 2.8942 -1.3536 7 7 4.3338 2.7702 -0.5805 8 14 3.2366 4.2103 -2.6787 9 1 1.9439 4.1415 -3.4065 10 1 3.3815 5.5485 -2.0517 11 1 4.3532 3.9866 -3.6317 12 6 2.3235 2.0503 1.2671 13 6 1.0715 2.7632 1.7819 14 7 1.3983 3.5018 3.0090 15 6 0.1849 4.1009 3.6061 16 6 0.3683 4.0641 5.1346 17 6 1.7374 3.3827 5.3607 18 1 2.5208 4.1277 5.4998 19 6 1.6780 2.4326 6.5586 20 6 1.9581 2.5940 4.0456 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.0929 3.3625 -0.6985 27 1 3.1185 2.7794 1.1107 28 1 2.6476 1.3109 1.9995 29 1 0.2965 2.0274 1.9962 30 1 0.7121 3.4592 1.0238 31 1 -0.6933 3.5205 3.3234 32 1 0.0759 5.1319 3.2698 33 1 -0.4266 3.4790 5.5971 34 1 0.3776 5.0758 5.5404 35 1 0.8814 1.7044 6.4055 36 1 1.4792 3.0034 7.4656 37 1 2.6311 1.9131 6.6578 38 1 3.0204 2.4193 3.8753 39 1 1.4107 1.6515 4.0657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:33 Heat of formation + Delta-G solvation = 12.612920 kcal Electronic energy + Delta-G solvation = -16539.036951 eV Core-core repulsion = 14095.733343 eV Total energy + Delta-G solvation = -2443.303607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.76966 -35.96095 -33.08232 -31.79219 -30.08855 -28.75944 -26.98284 -25.57337 -23.88467 -21.82411 -20.47011 -20.04590 -19.61338 -16.66867 -15.71443 -15.02775 -14.82829 -14.22483 -13.79494 -13.58497 -13.29792 -13.00533 -12.61168 -12.36411 -12.24524 -11.93654 -11.80859 -11.42597 -11.05408 -10.97027 -10.72204 -10.68137 -10.50259 -10.48134 -10.36693 -10.20629 -9.91333 -9.64807 -9.51066 -8.40602 -7.81616 -6.47941 -5.70229 -3.31976 3.40673 3.49042 3.51293 4.42810 4.58071 4.81465 4.90805 5.08932 5.39110 5.42164 5.59392 5.64796 5.67877 5.74573 5.89874 5.96468 6.00833 6.03154 6.12523 6.15891 6.20462 6.33571 6.39765 6.41606 6.46739 6.52837 6.64047 6.73588 6.94246 7.12214 7.23541 7.48234 7.57420 7.87588 7.95531 8.61626 9.27917 9.89623 10.48753 11.28730 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.007765 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.785813 B = 3605.015521 C = 4064.601151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.585 5.585 4 C -0.263 4.263 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.153 3.847 13 C 0.033 3.967 14 N -0.515 5.515 15 C 0.036 3.964 16 C -0.125 4.125 17 C -0.099 4.099 18 H 0.080 0.920 19 C -0.141 4.141 20 C 0.044 3.956 21 H 0.048 0.952 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.030 0.970 26 H 0.254 0.746 27 H 0.101 0.899 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 -0.150 10.958 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.306 5.306 4 C -0.392 4.392 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.217 1.217 12 C 0.026 3.974 13 C -0.097 4.097 14 N -0.239 5.239 15 C -0.093 4.093 16 C -0.163 4.163 17 C -0.119 4.119 18 H 0.099 0.901 19 C -0.199 4.199 20 C -0.084 4.084 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.804 0.315 10.768 12.237 hybrid contribution -0.739 0.133 -0.496 0.900 sum -6.543 0.447 10.272 12.187 Atomic orbital electron populations 1.22398 1.00327 0.98823 1.01063 1.20839 0.91531 0.87550 0.98641 1.43734 1.76479 1.08082 1.02276 1.18996 1.04552 1.22693 0.92998 0.92436 1.25212 0.94278 1.01145 0.97864 1.69994 1.04074 1.37767 1.40763 0.86354 0.77519 0.82185 0.81448 1.20159 1.21346 1.21687 1.20884 0.95008 0.96065 0.85459 1.23145 1.00256 0.95945 0.90342 1.64764 1.24576 1.30419 1.04183 1.22834 0.92635 1.00323 0.93481 1.22463 0.97153 1.00699 0.96009 1.22099 0.97441 0.97650 0.94667 0.90143 1.21765 1.01778 0.99021 0.97311 1.23262 1.00955 0.94121 0.90073 0.93237 0.94647 0.93999 0.93683 0.95155 0.93617 0.88127 0.96197 0.96656 0.91140 0.94452 0.90978 0.91968 0.91547 0.92903 0.92850 0.92484 0.89925 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.23 37.16 0.38 -2.77 16 2 C 0.14 3.09 6.43 -4.04 -0.03 3.06 16 3 N -0.58 -14.90 2.42 -173.24 -0.42 -15.32 16 4 C -0.26 -7.31 9.46 -15.06 -0.14 -7.45 16 5 H 0.06 1.61 7.91 -52.49 -0.42 1.19 16 6 C 0.02 0.44 4.97 -17.43 -0.09 0.36 16 7 N -0.88 -25.92 11.47 55.49 0.64 -25.29 16 8 Si 0.90 21.98 29.60 -169.99 -5.03 16.95 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 C 0.15 3.68 5.03 -4.04 -0.02 3.66 16 13 C 0.03 0.70 5.20 -3.83 -0.02 0.68 16 14 N -0.51 -9.60 5.36 -230.28 -1.23 -10.83 16 15 C 0.04 0.55 6.70 -2.75 -0.02 0.53 16 16 C -0.13 -1.58 6.51 -25.38 -0.17 -1.74 16 17 C -0.10 -1.31 3.65 -88.76 -0.32 -1.63 16 18 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.14 -1.51 9.15 37.16 0.34 -1.17 16 20 C 0.04 0.72 4.77 -1.79 -0.01 0.71 16 21 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.78 6.59 -51.93 -0.34 0.44 16 24 H 0.04 1.01 8.06 -51.93 -0.42 0.59 16 25 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.10 2.80 5.55 -51.93 -0.29 2.51 16 28 H 0.02 0.46 6.80 -51.93 -0.35 0.11 16 29 H 0.02 0.31 6.39 -51.93 -0.33 -0.02 16 30 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.04 0.57 7.65 -51.93 -0.40 0.18 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.43 7.75 -51.93 -0.40 1.03 16 39 H 0.04 0.64 7.93 -51.93 -0.41 0.22 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -29.14 304.16 -8.67 -37.81 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.11 Total: -2.14 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.09 Total: -5.77 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -1.02 Total: -51.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.14 -8.67 -37.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.426 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds