Wall clock time and date at job start Mon Mar 30 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46890 * 2 1 4 4 C 1.36938 * 120.00212 * 272.92823 * 3 2 1 5 5 H 1.07999 * 119.99894 * 38.57903 * 4 3 2 6 6 C 1.38817 * 119.99983 * 218.58154 * 4 3 2 7 7 N 1.31619 * 119.99816 * 20.30115 * 6 4 3 8 8 Si 1.86794 * 120.00067 * 200.30154 * 6 4 3 9 9 H 1.48504 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47382 * 119.99921 * 8 6 4 11 11 H 1.48501 * 109.46896 * 240.00139 * 8 6 4 12 12 C 1.46505 * 119.99820 * 92.92691 * 3 2 1 13 13 C 1.52995 * 109.47093 * 270.00191 * 12 3 2 14 14 N 1.46899 * 109.46926 * 183.43804 * 13 12 3 15 15 C 1.47909 * 111.00032 * 185.30047 * 14 13 12 16 16 C 1.53995 * 107.05845 * 145.83779 * 15 14 13 17 17 C 1.54586 * 105.13961 * 358.77737 * 16 15 14 18 18 H 1.09001 * 110.72860 * 96.58009 * 17 16 15 19 19 C 1.53008 * 110.72445 * 219.68018 * 17 16 15 20 20 C 1.48733 * 111.04397 * 302.87204 * 14 13 12 21 21 H 1.09002 * 109.47698 * 59.99925 * 1 2 3 22 22 H 1.08999 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47408 * 299.99549 * 1 2 3 24 24 H 1.09002 * 109.47408 * 240.00451 * 2 1 3 25 25 H 1.08993 * 109.47712 * 120.00286 * 2 1 3 26 26 H 0.96997 * 119.99664 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46731 * 149.99791 * 12 3 2 28 28 H 1.09000 * 109.46993 * 30.00290 * 12 3 2 29 29 H 1.08996 * 109.47525 * 63.43433 * 13 12 3 30 30 H 1.09007 * 109.47224 * 303.43452 * 13 12 3 31 31 H 1.09001 * 109.91348 * 26.48578 * 15 14 13 32 32 H 1.08996 * 109.91605 * 265.19419 * 15 14 13 33 33 H 1.08998 * 110.30865 * 239.85426 * 16 15 14 34 34 H 1.09004 * 110.38458 * 117.73496 * 16 15 14 35 35 H 1.09003 * 109.46561 * 56.14655 * 19 17 16 36 36 H 1.09003 * 109.46999 * 296.15045 * 19 17 16 37 37 H 1.08995 * 109.47080 * 176.14908 * 19 17 16 38 38 H 1.09000 * 110.83659 * 81.96165 * 20 14 13 39 39 H 1.09005 * 110.58262 * 318.78034 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1894 2.0470 -1.1843 5 1 1.4790 1.9129 -1.9867 6 6 3.2759 2.8942 -1.3536 7 7 4.3338 2.7702 -0.5805 8 14 3.2366 4.2103 -2.6787 9 1 1.9439 4.1415 -3.4065 10 1 3.3815 5.5485 -2.0517 11 1 4.3532 3.9866 -3.6317 12 6 2.3235 2.0503 1.2671 13 6 1.0715 2.7632 1.7819 14 7 1.3983 3.5018 3.0090 15 6 0.1849 4.1009 3.6061 16 6 0.3683 4.0641 5.1346 17 6 1.7374 3.3827 5.3607 18 1 2.5208 4.1277 5.4998 19 6 1.6780 2.4326 6.5586 20 6 1.9581 2.5940 4.0456 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.0929 3.3625 -0.6985 27 1 3.1185 2.7794 1.1107 28 1 2.6476 1.3109 1.9995 29 1 0.2965 2.0274 1.9962 30 1 0.7121 3.4592 1.0238 31 1 -0.6933 3.5205 3.3234 32 1 0.0759 5.1319 3.2698 33 1 -0.4266 3.4790 5.5971 34 1 0.3776 5.0758 5.5404 35 1 0.8814 1.7044 6.4055 36 1 1.4792 3.0034 7.4656 37 1 2.6311 1.9131 6.6578 38 1 3.0204 2.4193 3.8753 39 1 1.4107 1.6515 4.0657 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:33 Heat of formation + Delta-G solvation = -4.969842 kcal Electronic energy + Delta-G solvation = -16539.799396 eV Core-core repulsion = 14095.733343 eV Total energy + Delta-G solvation = -2444.066053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09294 -37.80372 -34.44419 -33.80058 -31.50262 -30.33605 -28.58668 -26.97654 -25.67389 -23.31783 -22.16140 -21.51961 -20.92688 -18.63606 -16.99979 -16.95835 -16.30604 -15.93214 -15.50249 -15.19570 -14.69277 -14.17301 -14.11870 -13.79530 -13.77730 -13.37695 -13.16881 -13.01569 -12.84599 -12.65069 -12.45470 -12.24726 -12.05924 -11.85095 -11.75585 -11.58009 -11.47681 -11.41700 -11.32634 -10.51644 -9.26929 -8.55200 -7.80636 -5.47853 1.43899 1.47177 1.56898 2.49746 3.05556 3.27697 3.70627 3.75444 3.85706 4.09016 4.28379 4.32220 4.44211 4.51487 4.56384 4.64143 4.68280 4.78403 4.79997 4.84084 4.85706 4.92073 5.03951 5.04927 5.08348 5.22589 5.25821 5.31625 5.36387 5.47237 5.53770 5.66670 5.79548 6.09271 6.21617 6.49313 7.18539 7.86855 8.40252 9.14023 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.007765 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.785813 B = 3605.015521 C = 4064.601151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.603 5.603 4 C -0.270 4.270 5 H 0.053 0.947 6 C -0.033 4.033 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.290 1.290 11 H -0.287 1.287 12 C 0.161 3.839 13 C 0.055 3.945 14 N -0.538 5.538 15 C 0.032 3.968 16 C -0.116 4.116 17 C -0.094 4.094 18 H 0.077 0.923 19 C -0.136 4.136 20 C 0.042 3.958 21 H 0.036 0.964 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.251 0.749 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -0.131 12.208 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.325 5.325 4 C -0.400 4.400 5 H 0.071 0.929 6 C -0.231 4.231 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.035 3.965 13 C -0.075 4.075 14 N -0.262 5.262 15 C -0.096 4.096 16 C -0.154 4.154 17 C -0.113 4.113 18 H 0.096 0.904 19 C -0.193 4.193 20 C -0.086 4.086 21 H 0.055 0.945 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.244 0.319 12.027 14.044 hybrid contribution -0.290 0.071 -0.863 0.913 sum -7.534 0.390 11.164 13.474 Atomic orbital electron populations 1.22187 0.97559 1.00830 1.00444 1.20989 0.93585 0.85772 0.98694 1.43981 1.76919 1.09560 1.02013 1.19191 1.04165 1.23015 0.93674 0.92899 1.25911 0.94030 1.03061 1.00116 1.70122 1.04614 1.38579 1.42517 0.85391 0.77740 0.79312 0.79085 1.19203 1.21681 1.21412 1.20672 0.95323 0.95314 0.85221 1.22680 0.98503 0.95235 0.91059 1.64676 1.26534 1.30790 1.04249 1.22922 0.91213 0.99910 0.95561 1.22451 0.97194 1.02096 0.93670 1.22081 0.97773 0.97655 0.93777 0.90427 1.21728 1.02067 0.98723 0.96791 1.23276 0.99593 0.94398 0.91296 0.94457 0.91275 0.93928 0.94618 0.94099 0.93957 0.91868 0.95991 0.95894 0.93743 0.94309 0.90994 0.90112 0.89775 0.92577 0.90820 0.92376 0.91861 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 10.23 71.98 0.74 -4.71 16 2 C 0.14 5.86 6.43 86.38 0.56 6.41 16 3 N -0.60 -31.12 2.42 -702.00 -1.70 -32.82 16 4 C -0.27 -15.25 9.46 84.03 0.79 -14.45 16 5 H 0.05 2.98 7.91 -2.91 -0.02 2.96 16 6 C -0.03 -1.91 4.97 84.86 0.42 -1.49 16 7 N -0.91 -55.06 11.47 21.65 0.25 -54.81 16 8 Si 0.96 45.89 29.60 68.60 2.03 47.92 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 C 0.16 7.96 5.03 86.38 0.43 8.39 16 13 C 0.06 2.37 5.20 86.30 0.45 2.81 16 14 N -0.54 -19.96 5.36 -882.46 -4.73 -24.69 16 15 C 0.03 0.94 6.70 86.45 0.58 1.52 16 16 C -0.12 -2.59 6.51 31.47 0.20 -2.39 16 17 C -0.09 -2.27 3.65 -9.59 -0.03 -2.30 16 18 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 19 C -0.14 -2.51 9.15 71.98 0.66 -1.85 16 20 C 0.04 1.35 4.77 86.61 0.41 1.76 16 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.04 1.52 6.59 -2.39 -0.02 1.50 16 24 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 25 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 26 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.06 3.65 5.55 -2.39 -0.01 3.64 16 28 H 0.02 1.04 6.80 -2.39 -0.02 1.02 16 29 H 0.02 0.93 6.39 -2.39 -0.02 0.92 16 30 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.04 1.13 7.65 -2.39 -0.02 1.11 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.54 7.84 -2.39 -0.02 1.52 16 34 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 39 H 0.04 1.25 7.93 -2.38 -0.02 1.23 16 Total: -1.00 -63.14 304.16 2.05 -61.09 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.98 Total: 9.60 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 5.21 Total: -6.29 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -6.18 Total: -112.32 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -63.14 2.05 -61.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.123 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds