Wall clock time and date at job start Mon Mar 30 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46496 * 109.46904 * 2 1 4 4 C 1.36937 * 120.00376 * 264.28746 * 3 2 1 5 5 H 1.07997 * 120.00707 * 188.63981 * 4 3 2 6 6 C 1.38819 * 119.99521 * 8.64138 * 4 3 2 7 7 N 1.31614 * 119.99970 * 24.60803 * 6 4 3 8 8 Si 1.86802 * 119.99669 * 204.60232 * 6 4 3 9 9 H 1.48497 * 109.47057 * 85.02772 * 8 6 4 10 10 H 1.48501 * 109.46668 * 205.02663 * 8 6 4 11 11 H 1.48499 * 109.47429 * 325.02684 * 8 6 4 12 12 C 1.46507 * 120.00200 * 84.29088 * 3 2 1 13 13 C 1.52998 * 109.47050 * 270.00139 * 12 3 2 14 14 N 1.46898 * 109.47046 * 180.02562 * 13 12 3 15 15 C 1.47842 * 111.00322 * 49.14943 * 14 13 12 16 16 C 1.54907 * 104.79460 * 146.36567 * 15 14 13 17 17 C 1.55143 * 101.65351 * 322.93234 * 16 15 14 18 18 H 1.08994 * 110.70288 * 277.27207 * 17 16 15 19 19 C 1.53001 * 110.85294 * 154.10547 * 17 16 15 20 20 C 1.47436 * 111.00067 * 170.00056 * 14 13 12 21 21 H 1.08994 * 109.46887 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46936 * 299.99800 * 1 2 3 23 23 H 1.09001 * 109.46886 * 59.99616 * 1 2 3 24 24 H 1.08997 * 109.46936 * 240.00200 * 2 1 3 25 25 H 1.08991 * 109.46906 * 120.00316 * 2 1 3 26 26 H 0.97003 * 119.99714 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.46925 * 149.99704 * 12 3 2 28 28 H 1.09001 * 109.46721 * 29.99729 * 12 3 2 29 29 H 1.08997 * 109.47315 * 59.99095 * 13 12 3 30 30 H 1.09002 * 109.46506 * 299.99499 * 13 12 3 31 31 H 1.08996 * 110.37865 * 265.19627 * 15 14 13 32 32 H 1.08996 * 110.37417 * 27.53843 * 15 14 13 33 33 H 1.08997 * 110.98790 * 204.83822 * 16 15 14 34 34 H 1.09001 * 110.99041 * 81.02799 * 16 15 14 35 35 H 1.08995 * 109.46984 * 303.91004 * 19 17 16 36 36 H 1.08997 * 109.47122 * 63.91090 * 19 17 16 37 37 H 1.08997 * 109.46911 * 183.91141 * 19 17 16 38 38 H 1.09001 * 109.89395 * 117.33424 * 20 14 13 39 39 H 1.09001 * 110.02534 * 356.21251 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9875 -1.1800 5 1 2.8471 2.9502 -1.1713 6 6 2.0732 1.3644 -2.3874 7 7 1.0959 0.4859 -2.4602 8 14 3.0771 1.7732 -3.9088 9 1 4.3047 0.9379 -3.9309 10 1 2.2689 1.4977 -5.1237 11 1 3.4557 3.2088 -3.8811 12 6 2.1435 2.1140 1.2625 13 6 0.8338 2.8474 1.5584 14 7 0.9595 3.5826 2.8240 15 6 2.2020 4.3835 2.8504 16 6 1.8396 5.6489 3.6671 17 6 0.3808 5.9108 3.2084 18 1 0.3657 6.4561 2.2647 19 6 -0.3998 6.6707 4.2827 20 6 -0.1868 4.4876 3.0254 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.8973 0.0503 -3.3039 27 1 2.9552 2.8371 1.1839 28 1 2.3580 1.4133 2.0695 29 1 0.0221 2.1242 1.6369 30 1 0.6195 3.5480 0.7514 31 1 3.0004 3.8292 3.3437 32 1 2.4985 4.6573 1.8379 33 1 2.4882 6.4838 3.4018 34 1 1.8823 5.4482 4.7376 35 1 -0.3619 6.1158 5.2201 36 1 0.0438 7.6560 4.4256 37 1 -1.4373 6.7815 3.9678 38 1 -0.7407 4.1919 3.9165 39 1 -0.8424 4.4590 2.1551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:36 Heat of formation + Delta-G solvation = 24.654495 kcal Electronic energy + Delta-G solvation = -16477.564704 eV Core-core repulsion = 14034.783259 eV Total energy + Delta-G solvation = -2442.781445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.95423 -36.09643 -33.34267 -31.15702 -29.62494 -29.35863 -27.43207 -25.02497 -23.72123 -22.18296 -20.54488 -19.99255 -19.65040 -16.68564 -15.86220 -15.32300 -14.73692 -14.20455 -13.63817 -13.45146 -13.33826 -12.98877 -12.89767 -12.38455 -11.96636 -11.76769 -11.59592 -11.38187 -11.05759 -10.88331 -10.78354 -10.69361 -10.61045 -10.50662 -10.35515 -10.17132 -9.76728 -9.53105 -9.28279 -8.30594 -7.85081 -6.83546 -5.72109 -3.03029 3.41511 3.49183 3.49358 4.34980 4.57918 4.67538 4.86329 4.95575 5.38165 5.46912 5.52882 5.54784 5.62417 5.72205 5.76772 5.93885 5.97216 6.00136 6.07394 6.13515 6.20982 6.26215 6.42629 6.49052 6.66724 6.80888 6.85757 6.99983 7.17283 7.24952 7.42539 7.55675 7.72732 7.83584 8.15383 8.42283 9.29644 9.93200 10.38644 11.31771 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.006619 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.274376 B = 4229.395582 C = 4590.864058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 N -0.597 5.597 4 C -0.247 4.247 5 H 0.071 0.929 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.283 1.283 12 C 0.153 3.847 13 C 0.027 3.973 14 N -0.532 5.532 15 C 0.042 3.958 16 C -0.125 4.125 17 C -0.116 4.116 18 H 0.072 0.928 19 C -0.138 4.138 20 C 0.046 3.954 21 H 0.018 0.982 22 H 0.014 0.986 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.003 0.997 26 H 0.251 0.749 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 7.923 10.818 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 N -0.319 5.319 4 C -0.376 4.376 5 H 0.089 0.911 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.726 3.274 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.209 1.209 12 C 0.025 3.975 13 C -0.103 4.103 14 N -0.257 5.257 15 C -0.086 4.086 16 C -0.163 4.163 17 C -0.136 4.136 18 H 0.090 0.910 19 C -0.195 4.195 20 C -0.082 4.082 21 H 0.037 0.963 22 H 0.033 0.967 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.060 7.431 11.042 13.352 hybrid contribution 0.215 0.823 -1.596 1.808 sum -0.845 8.254 9.447 12.573 Atomic orbital electron populations 1.22420 0.99406 0.98138 1.01022 1.20794 0.92445 0.84465 0.98121 1.44264 1.75806 1.10236 1.01581 1.19265 1.31133 1.03522 0.83687 0.91127 1.24708 0.98023 1.00128 0.97230 1.70160 1.27345 1.31991 1.24806 0.86391 0.80401 0.77758 0.82867 1.21615 1.21992 1.20891 1.20847 0.93689 0.94377 0.88545 1.23324 1.02309 0.97198 0.87459 1.63702 1.01246 1.25090 1.35615 1.23017 0.93717 0.92856 0.98990 1.22787 0.95530 0.97628 1.00379 1.22386 0.95597 0.96616 0.98991 0.90973 1.21711 0.99697 0.99719 0.98412 1.22888 0.93986 0.90234 1.01088 0.96289 0.96742 0.89272 0.89545 0.97908 0.93869 0.93833 0.93823 0.91020 0.94947 0.90534 0.93263 0.91401 0.90965 0.92458 0.92866 0.92768 0.91093 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.58 37.16 0.36 -3.22 16 2 C 0.17 4.14 5.64 -4.04 -0.02 4.12 16 3 N -0.60 -15.08 2.54 -173.24 -0.44 -15.52 16 4 C -0.25 -6.76 9.70 -15.06 -0.15 -6.91 16 5 H 0.07 1.91 7.93 -52.49 -0.42 1.50 16 6 C 0.00 -0.11 4.91 -17.43 -0.09 -0.19 16 7 N -0.90 -25.33 8.54 55.49 0.47 -24.86 16 8 Si 0.90 21.77 29.62 -169.99 -5.03 16.74 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.15 3.27 5.37 -4.04 -0.02 3.25 16 13 C 0.03 0.54 5.03 -3.83 -0.02 0.52 16 14 N -0.53 -8.90 5.31 -231.26 -1.23 -10.13 16 15 C 0.04 0.62 5.30 -2.30 -0.01 0.61 16 16 C -0.13 -1.51 6.53 -24.59 -0.16 -1.67 16 17 C -0.12 -1.42 3.53 -88.79 -0.31 -1.74 16 18 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 19 C -0.14 -1.35 9.14 37.16 0.34 -1.01 16 20 C 0.05 0.67 6.46 -2.84 -0.02 0.66 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.01 0.31 5.98 -51.93 -0.31 0.00 16 23 H 0.09 2.39 6.28 -51.93 -0.33 2.06 16 24 H 0.09 2.36 5.87 -51.93 -0.31 2.06 16 25 H 0.00 0.06 7.97 -51.93 -0.41 -0.35 16 26 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.04 0.91 6.36 -51.93 -0.33 0.58 16 28 H 0.04 0.90 7.95 -51.93 -0.41 0.49 16 29 H 0.07 1.52 5.93 -51.93 -0.31 1.21 16 30 H 0.03 0.71 7.96 -51.93 -0.41 0.30 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.80 7.02 -51.93 -0.36 0.44 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 39 H 0.05 0.79 7.50 -51.93 -0.39 0.40 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -28.02 296.47 -8.77 -36.79 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.91 Total: -1.92 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.10 Total: -5.58 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -1.19 Total: -50.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.02 -8.77 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.446 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds