Wall clock time and date at job start Mon Mar 30 2020 02:54:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 N 1.46910 * 109.47302 * 2 1
4 4 C 1.46893 * 111.00251 * 199.61324 * 3 2 1
5 5 C 1.53000 * 109.47417 * 66.04376 * 4 3 2
6 6 C 1.50699 * 109.47549 * 180.02562 * 5 4 3
7 7 H 1.08004 * 119.99633 * 359.97438 * 6 5 4
8 8 C 1.37879 * 120.00203 * 180.02562 * 6 5 4
9 9 N 1.31513 * 119.99949 * 359.97438 * 8 6 5
10 10 Si 1.86801 * 119.99875 * 179.97438 * 8 6 5
11 11 H 1.48500 * 109.46999 * 60.00056 * 10 8 6
12 12 H 1.48503 * 109.46613 * 179.97438 * 10 8 6
13 13 H 1.48496 * 109.47030 * 299.99936 * 10 8 6
14 14 C 1.46902 * 110.99717 * 75.65501 * 3 2 1
15 15 C 1.53001 * 109.46765 * 199.73066 * 14 3 2
16 16 C 1.53929 * 113.73229 * 87.32651 * 15 14 3
17 17 N 1.48300 * 86.06402 * 138.12945 * 16 15 14
18 18 C 1.46903 * 111.00744 * 222.42016 * 17 16 15
19 19 C 1.47956 * 90.75381 * 335.30589 * 17 16 15
20 20 H 1.09001 * 109.46905 * 294.74961 * 1 2 3
21 21 H 1.09000 * 109.47665 * 54.74926 * 1 2 3
22 22 H 1.09003 * 109.47076 * 174.75413 * 1 2 3
23 23 H 1.09006 * 109.47443 * 240.00247 * 2 1 3
24 24 H 1.09002 * 109.47727 * 119.99848 * 2 1 3
25 25 H 1.08993 * 109.47190 * 186.04693 * 4 3 2
26 26 H 1.09002 * 109.47307 * 306.04717 * 4 3 2
27 27 H 1.09006 * 109.46985 * 300.00555 * 5 4 3
28 28 H 1.08998 * 109.46983 * 59.99587 * 5 4 3
29 29 H 0.96995 * 120.00037 * 180.02562 * 9 8 6
30 30 H 1.09003 * 109.46658 * 79.73229 * 14 3 2
31 31 H 1.08996 * 109.47318 * 319.73413 * 14 3 2
32 32 H 1.09000 * 112.93814 * 315.75502 * 15 14 3
33 33 H 1.09000 * 113.75638 * 252.49762 * 16 15 14
34 34 H 1.08997 * 113.76105 * 23.86558 * 16 15 14
35 35 H 1.08996 * 109.47281 * 159.34584 * 18 17 16
36 36 H 1.08997 * 109.47041 * 279.35223 * 18 17 16
37 37 H 1.08997 * 109.46854 * 39.34657 * 18 17 16
38 38 H 1.09001 * 113.76542 * 270.37559 * 19 17 16
39 39 H 1.08998 * 113.86317 * 139.01709 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0197 1.3851 0.0000
4 6 3.4131 1.4508 -0.4603
5 6 3.4839 1.0397 -1.9323
6 6 4.9134 1.1065 -2.4045
7 1 5.6935 1.4121 -1.7228
8 6 5.2255 0.7786 -3.7068
9 7 4.2755 0.4070 -4.5370
10 14 6.9974 0.8621 -4.2921
11 1 7.8309 -0.0606 -3.4803
12 1 7.0660 0.4630 -5.7209
13 1 7.5039 2.2498 -4.1404
14 6 1.8748 1.9946 1.3287
15 6 1.9159 3.5185 1.1979
16 6 0.5422 4.1534 0.9166
17 7 0.9393 5.1979 1.8916
18 6 -0.1774 5.5377 2.7834
19 6 1.8744 4.2575 2.5476
20 1 -0.3633 0.4302 0.9333
21 1 -0.3634 0.5931 -0.8392
22 1 -0.3633 -1.0234 -0.0940
23 1 1.8933 -0.5138 -0.8900
24 1 1.8934 -0.5138 0.8900
25 1 3.7847 2.4694 -0.3493
26 1 4.0250 0.7737 0.1358
27 1 3.1121 0.0210 -2.0434
28 1 2.8719 1.7166 -2.5285
29 1 4.4951 0.1759 -5.4530
30 1 2.6903 1.6629 1.9714
31 1 0.9226 1.6929 1.7650
32 1 2.7049 3.8665 0.5312
33 1 0.4294 4.5221 -0.1029
34 1 -0.2992 3.5433 1.2450
35 1 0.2099 6.0046 3.6890
36 1 -0.8495 6.2301 2.2764
37 1 -0.7213 4.6305 3.0465
38 1 1.4219 3.6776 3.3520
39 1 2.8258 4.7076 2.8312
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000692700935.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:54
Heat of formation + Delta-G solvation = 28.256905 kcal
Electronic energy + Delta-G solvation = -16046.312190 eV
Core-core repulsion = 13603.686957 eV
Total energy + Delta-G solvation = -2442.625233 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.90414 -37.19033 -33.12952 -31.52437 -30.67215 -28.74233 -26.07882 -25.99812
-24.04589 -22.38228 -21.39106 -19.82047 -19.22484 -16.47213 -15.86821 -15.42337
-15.04838 -14.77722 -14.30365 -14.27868 -13.65546 -13.33792 -12.96923 -12.68090
-12.41711 -11.92193 -11.74281 -11.60360 -11.32377 -11.17911 -10.95978 -10.78555
-10.61969 -10.54381 -10.43420 -10.19463 -9.72295 -9.31979 -9.08667 -8.79779
-8.29500 -7.66742 -5.96674 -3.98905 3.35505 3.39828 3.42252 3.99197
4.26791 4.50446 4.72280 4.96592 5.07821 5.25471 5.38613 5.42968
5.45112 5.46365 5.59958 5.66465 5.72083 5.75894 5.78582 5.89605
5.90621 6.02743 6.14031 6.28250 6.30176 6.43073 6.50715 6.55809
6.63428 7.01862 7.07107 7.55320 7.63531 7.84364 7.94336 8.12742
8.46946 9.08238 9.64547 11.14645
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.030379 B = 0.005778 C = 0.005195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 921.456235 B = 4845.058124 C = 5388.096240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.046 3.954
3 N -0.536 5.536
4 C 0.062 3.938
5 C 0.029 3.971
6 C -0.522 4.522
7 H 0.053 0.947
8 C 0.059 3.941
9 N -0.894 5.894
10 Si 0.891 3.109
11 H -0.278 1.278
12 H -0.287 1.287
13 H -0.277 1.277
14 C 0.062 3.938
15 C -0.104 4.104
16 C 0.016 3.984
17 N -0.489 5.489
18 C -0.009 4.009
19 C 0.002 3.998
20 H 0.042 0.958
21 H 0.063 0.937
22 H 0.051 0.949
23 H 0.087 0.913
24 H 0.023 0.977
25 H 0.062 0.938
26 H 0.017 0.983
27 H 0.017 0.983
28 H 0.024 0.976
29 H 0.261 0.739
30 H 0.031 0.969
31 H 0.064 0.936
32 H 0.105 0.895
33 H 0.090 0.910
34 H 0.066 0.934
35 H 0.064 0.936
36 H 0.068 0.932
37 H 0.031 0.969
38 H 0.065 0.935
39 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.208 4.088 13.491 16.312
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.082 4.082
3 N -0.260 5.260
4 C -0.065 4.065
5 C -0.009 4.009
6 C -0.561 4.561
7 H 0.071 0.929
8 C -0.142 4.142
9 N -0.533 5.533
10 Si 0.719 3.281
11 H -0.203 1.203
12 H -0.213 1.213
13 H -0.202 1.202
14 C -0.067 4.067
15 C -0.123 4.123
16 C -0.112 4.112
17 N -0.211 5.211
18 C -0.159 4.159
19 C -0.128 4.128
20 H 0.061 0.939
21 H 0.082 0.918
22 H 0.070 0.930
23 H 0.106 0.894
24 H 0.041 0.959
25 H 0.080 0.920
26 H 0.036 0.964
27 H 0.035 0.965
28 H 0.043 0.957
29 H 0.070 0.930
30 H 0.049 0.951
31 H 0.083 0.917
32 H 0.123 0.877
33 H 0.109 0.891
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.086 0.914
37 H 0.050 0.950
38 H 0.083 0.917
39 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -8.317 4.951 12.760 16.015
hybrid contribution 1.049 -1.148 0.596 1.665
sum -7.268 3.803 13.355 15.673
Atomic orbital electron populations
1.21753 0.95872 1.00822 1.01510 1.22125 0.95206 0.89660 1.01215
1.62091 1.23098 1.17370 1.23421 1.22361 0.84866 0.99851 0.99413
1.19102 0.96533 0.96732 0.88497 1.21165 0.93406 1.45499 0.96025
0.92911 1.24979 0.97079 0.95331 0.96831 1.69959 1.32072 1.45780
1.05447 0.86676 0.85296 0.78491 0.77630 1.20344 1.21290 1.20220
1.22107 0.99957 0.93539 0.91055 1.22961 0.98641 0.94319 0.96361
1.24017 0.96809 0.91913 0.98481 1.68553 1.11496 1.30218 1.10795
1.22835 0.94898 1.00508 0.97630 1.23996 0.98361 0.93861 0.96538
0.93878 0.91781 0.93008 0.89437 0.95900 0.91980 0.96443 0.96516
0.95723 0.92978 0.95083 0.91735 0.87690 0.89145 0.91538 0.91753
0.91370 0.95005 0.91680 0.89576
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.98 9.95 37.15 0.37 -1.61 16
2 C 0.05 0.77 5.55 -3.82 -0.02 0.75 16
3 N -0.54 -9.56 4.37 -234.63 -1.02 -10.58 16
4 C 0.06 1.30 4.72 -3.83 -0.02 1.29 16
5 C 0.03 0.75 4.94 -27.88 -0.14 0.61 16
6 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16
7 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16
8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16
9 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16
10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16
11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
14 C 0.06 0.91 4.66 -3.82 -0.02 0.89 16
15 C -0.10 -1.45 3.93 -89.69 -0.35 -1.80 16
16 C 0.02 0.21 7.54 -2.57 -0.02 0.19 16
17 N -0.49 -6.25 6.56 -246.30 -1.62 -7.87 16
18 C -0.01 -0.10 9.65 60.07 0.58 0.48 16
19 C 0.00 0.02 7.55 -2.76 -0.02 0.00 16
20 H 0.04 0.54 6.89 -51.93 -0.36 0.18 16
21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
23 H 0.09 1.69 5.88 -51.93 -0.31 1.38 16
24 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16
25 H 0.06 1.30 6.63 -51.93 -0.34 0.96 16
26 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16
27 H 0.02 0.46 6.25 -51.93 -0.32 0.13 16
28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16
29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
30 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16
31 H 0.06 0.85 6.27 -51.93 -0.33 0.53 16
32 H 0.10 1.69 6.78 -51.93 -0.35 1.34 16
33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
34 H 0.07 0.81 7.39 -51.93 -0.38 0.43 16
35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.03 0.30 7.62 -51.93 -0.40 -0.09 16
38 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16
39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
LS Contribution 306.90 15.07 4.62 4.62
Total: -1.00 -29.75 306.90 -9.30 -39.05
By element:
Atomic # 1 Polarization: 3.97 SS G_CDS: -6.95 Total: -2.98 kcal
Atomic # 6 Polarization: -12.71 SS G_CDS: -0.05 Total: -12.76 kcal
Atomic # 7 Polarization: -42.79 SS G_CDS: -1.90 Total: -44.69 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.75 -9.30 -39.05 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000692700935.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.311 kcal
(2) G-P(sol) polarization free energy of solvation -29.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.257 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds