Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46910 * 109.47302 * 2 1 4 4 C 1.46893 * 111.00251 * 199.61324 * 3 2 1 5 5 C 1.53000 * 109.47417 * 66.04376 * 4 3 2 6 6 C 1.50699 * 109.47549 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99633 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00203 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99949 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99875 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 60.00056 * 10 8 6 12 12 H 1.48503 * 109.46613 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47030 * 299.99936 * 10 8 6 14 14 C 1.46902 * 110.99717 * 75.65501 * 3 2 1 15 15 C 1.53001 * 109.46765 * 199.73066 * 14 3 2 16 16 C 1.53929 * 113.73229 * 87.32651 * 15 14 3 17 17 N 1.48300 * 86.06402 * 138.12945 * 16 15 14 18 18 C 1.46903 * 111.00744 * 222.42016 * 17 16 15 19 19 C 1.47956 * 90.75381 * 335.30589 * 17 16 15 20 20 H 1.09001 * 109.46905 * 294.74961 * 1 2 3 21 21 H 1.09000 * 109.47665 * 54.74926 * 1 2 3 22 22 H 1.09003 * 109.47076 * 174.75413 * 1 2 3 23 23 H 1.09006 * 109.47443 * 240.00247 * 2 1 3 24 24 H 1.09002 * 109.47727 * 119.99848 * 2 1 3 25 25 H 1.08993 * 109.47190 * 186.04693 * 4 3 2 26 26 H 1.09002 * 109.47307 * 306.04717 * 4 3 2 27 27 H 1.09006 * 109.46985 * 300.00555 * 5 4 3 28 28 H 1.08998 * 109.46983 * 59.99587 * 5 4 3 29 29 H 0.96995 * 120.00037 * 180.02562 * 9 8 6 30 30 H 1.09003 * 109.46658 * 79.73229 * 14 3 2 31 31 H 1.08996 * 109.47318 * 319.73413 * 14 3 2 32 32 H 1.09000 * 112.93814 * 315.75502 * 15 14 3 33 33 H 1.09000 * 113.75638 * 252.49762 * 16 15 14 34 34 H 1.08997 * 113.76105 * 23.86558 * 16 15 14 35 35 H 1.08996 * 109.47281 * 159.34584 * 18 17 16 36 36 H 1.08997 * 109.47041 * 279.35223 * 18 17 16 37 37 H 1.08997 * 109.46854 * 39.34657 * 18 17 16 38 38 H 1.09001 * 113.76542 * 270.37559 * 19 17 16 39 39 H 1.08998 * 113.86317 * 139.01709 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4131 1.4508 -0.4603 5 6 3.4839 1.0397 -1.9323 6 6 4.9134 1.1065 -2.4045 7 1 5.6935 1.4121 -1.7228 8 6 5.2255 0.7786 -3.7068 9 7 4.2755 0.4070 -4.5370 10 14 6.9974 0.8621 -4.2921 11 1 7.8309 -0.0606 -3.4803 12 1 7.0660 0.4630 -5.7209 13 1 7.5039 2.2498 -4.1404 14 6 1.8748 1.9946 1.3287 15 6 1.9159 3.5185 1.1979 16 6 0.5422 4.1534 0.9166 17 7 0.9393 5.1979 1.8916 18 6 -0.1774 5.5377 2.7834 19 6 1.8744 4.2575 2.5476 20 1 -0.3633 0.4302 0.9333 21 1 -0.3634 0.5931 -0.8392 22 1 -0.3633 -1.0234 -0.0940 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7847 2.4694 -0.3493 26 1 4.0250 0.7737 0.1358 27 1 3.1121 0.0210 -2.0434 28 1 2.8719 1.7166 -2.5285 29 1 4.4951 0.1759 -5.4530 30 1 2.6903 1.6629 1.9714 31 1 0.9226 1.6929 1.7650 32 1 2.7049 3.8665 0.5312 33 1 0.4294 4.5221 -0.1029 34 1 -0.2992 3.5433 1.2450 35 1 0.2099 6.0046 3.6890 36 1 -0.8495 6.2301 2.2764 37 1 -0.7213 4.6305 3.0465 38 1 1.4219 3.6776 3.3520 39 1 2.8258 4.7076 2.8312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692700935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = 28.256905 kcal Electronic energy + Delta-G solvation = -16046.312190 eV Core-core repulsion = 13603.686957 eV Total energy + Delta-G solvation = -2442.625233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90414 -37.19033 -33.12952 -31.52437 -30.67215 -28.74233 -26.07882 -25.99812 -24.04589 -22.38228 -21.39106 -19.82047 -19.22484 -16.47213 -15.86821 -15.42337 -15.04838 -14.77722 -14.30365 -14.27868 -13.65546 -13.33792 -12.96923 -12.68090 -12.41711 -11.92193 -11.74281 -11.60360 -11.32377 -11.17911 -10.95978 -10.78555 -10.61969 -10.54381 -10.43420 -10.19463 -9.72295 -9.31979 -9.08667 -8.79779 -8.29500 -7.66742 -5.96674 -3.98905 3.35505 3.39828 3.42252 3.99197 4.26791 4.50446 4.72280 4.96592 5.07821 5.25471 5.38613 5.42968 5.45112 5.46365 5.59958 5.66465 5.72083 5.75894 5.78582 5.89605 5.90621 6.02743 6.14031 6.28250 6.30176 6.43073 6.50715 6.55809 6.63428 7.01862 7.07107 7.55320 7.63531 7.84364 7.94336 8.12742 8.46946 9.08238 9.64547 11.14645 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.005778 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.456235 B = 4845.058124 C = 5388.096240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.536 5.536 4 C 0.062 3.938 5 C 0.029 3.971 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.062 3.938 15 C -0.104 4.104 16 C 0.016 3.984 17 N -0.489 5.489 18 C -0.009 4.009 19 C 0.002 3.998 20 H 0.042 0.958 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.023 0.977 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.024 0.976 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 4.088 13.491 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.260 5.260 4 C -0.065 4.065 5 C -0.009 4.009 6 C -0.561 4.561 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.067 4.067 15 C -0.123 4.123 16 C -0.112 4.112 17 N -0.211 5.211 18 C -0.159 4.159 19 C -0.128 4.128 20 H 0.061 0.939 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.317 4.951 12.760 16.015 hybrid contribution 1.049 -1.148 0.596 1.665 sum -7.268 3.803 13.355 15.673 Atomic orbital electron populations 1.21753 0.95872 1.00822 1.01510 1.22125 0.95206 0.89660 1.01215 1.62091 1.23098 1.17370 1.23421 1.22361 0.84866 0.99851 0.99413 1.19102 0.96533 0.96732 0.88497 1.21165 0.93406 1.45499 0.96025 0.92911 1.24979 0.97079 0.95331 0.96831 1.69959 1.32072 1.45780 1.05447 0.86676 0.85296 0.78491 0.77630 1.20344 1.21290 1.20220 1.22107 0.99957 0.93539 0.91055 1.22961 0.98641 0.94319 0.96361 1.24017 0.96809 0.91913 0.98481 1.68553 1.11496 1.30218 1.10795 1.22835 0.94898 1.00508 0.97630 1.23996 0.98361 0.93861 0.96538 0.93878 0.91781 0.93008 0.89437 0.95900 0.91980 0.96443 0.96516 0.95723 0.92978 0.95083 0.91735 0.87690 0.89145 0.91538 0.91753 0.91370 0.95005 0.91680 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.95 37.15 0.37 -1.61 16 2 C 0.05 0.77 5.55 -3.82 -0.02 0.75 16 3 N -0.54 -9.56 4.37 -234.63 -1.02 -10.58 16 4 C 0.06 1.30 4.72 -3.83 -0.02 1.29 16 5 C 0.03 0.75 4.94 -27.88 -0.14 0.61 16 6 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.06 0.91 4.66 -3.82 -0.02 0.89 16 15 C -0.10 -1.45 3.93 -89.69 -0.35 -1.80 16 16 C 0.02 0.21 7.54 -2.57 -0.02 0.19 16 17 N -0.49 -6.25 6.56 -246.30 -1.62 -7.87 16 18 C -0.01 -0.10 9.65 60.07 0.58 0.48 16 19 C 0.00 0.02 7.55 -2.76 -0.02 0.00 16 20 H 0.04 0.54 6.89 -51.93 -0.36 0.18 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 1.69 5.88 -51.93 -0.31 1.38 16 24 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 25 H 0.06 1.30 6.63 -51.93 -0.34 0.96 16 26 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.02 0.46 6.25 -51.93 -0.32 0.13 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 31 H 0.06 0.85 6.27 -51.93 -0.33 0.53 16 32 H 0.10 1.69 6.78 -51.93 -0.35 1.34 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.81 7.39 -51.93 -0.38 0.43 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.30 7.62 -51.93 -0.40 -0.09 16 38 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -29.75 306.90 -9.30 -39.05 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.95 Total: -2.98 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.05 Total: -12.76 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -1.90 Total: -44.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.75 -9.30 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692700935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.311 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds