Wall clock time and date at job start Mon Mar 30 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47446 * 111.00222 * 2 1 4 4 C 1.54310 * 107.23347 * 123.26192 * 3 2 1 5 5 C 1.55144 * 103.02064 * 22.28639 * 4 3 2 6 6 C 1.47844 * 111.00381 * 120.84666 * 2 1 3 7 7 H 1.08998 * 110.36895 * 332.57615 * 6 2 1 8 8 C 1.53000 * 110.37119 * 94.80156 * 6 2 1 9 9 C 1.53000 * 109.47128 * 294.77075 * 8 6 2 10 10 N 1.46905 * 109.47007 * 185.69378 * 9 8 6 11 11 C 1.46892 * 111.00082 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47486 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99999 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99616 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47131 * 60.00092 * 17 15 13 19 19 H 1.48507 * 109.46744 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47148 * 299.99964 * 17 15 13 21 21 H 1.09008 * 109.46759 * 305.34603 * 1 2 3 22 22 H 1.09002 * 109.47589 * 65.34033 * 1 2 3 23 23 H 1.08999 * 109.47449 * 185.34846 * 1 2 3 24 24 H 1.09005 * 109.88675 * 242.66794 * 3 2 1 25 25 H 1.08998 * 109.88454 * 3.69059 * 3 2 1 26 26 H 1.08996 * 110.70623 * 140.66680 * 4 3 2 27 27 H 1.09001 * 110.70673 * 263.90552 * 4 3 2 28 28 H 1.09002 * 110.99282 * 206.25604 * 5 4 3 29 29 H 1.08994 * 110.99065 * 82.43625 * 5 4 3 30 30 H 1.09007 * 109.46720 * 174.77452 * 8 6 2 31 31 H 1.08993 * 109.47346 * 54.77401 * 8 6 2 32 32 H 1.08998 * 109.47310 * 305.68823 * 9 8 6 33 33 H 1.08994 * 109.47045 * 65.69827 * 9 8 6 34 34 H 1.00903 * 110.99760 * 303.95599 * 10 9 8 35 35 H 1.09002 * 109.46973 * 299.99857 * 11 10 9 36 36 H 1.09000 * 109.47504 * 60.00103 * 11 10 9 37 37 H 1.08997 * 109.47201 * 300.00308 * 12 11 10 38 38 H 1.09000 * 109.46659 * 59.99616 * 12 11 10 39 39 H 0.96998 * 119.99453 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3049 0.0443 1.5436 6 6 1.9989 -0.7077 1.1850 7 1 1.2882 -0.6519 2.0095 8 6 2.3019 -2.1677 0.8420 9 6 0.9978 -2.8939 0.5061 10 7 1.2702 -4.3241 0.3102 11 6 0.0382 -5.0549 -0.0153 12 6 0.3615 -6.5373 -0.2123 13 6 -0.9025 -7.2871 -0.5456 14 1 -1.8423 -6.7591 -0.6109 15 6 -0.8589 -8.6472 -0.7683 16 7 0.2857 -9.2901 -0.6894 17 14 -2.4256 -9.5764 -1.1822 18 1 -3.0118 -9.0270 -2.4310 19 1 -2.1118 -11.0153 -1.3733 20 1 -3.3987 -9.4259 -0.0706 21 1 -0.3633 0.5946 0.8383 22 1 -0.3634 0.4288 -0.9339 23 1 -0.3634 -1.0232 0.0958 24 1 2.5697 1.5540 -0.9106 25 1 1.1754 2.0892 0.0660 26 1 3.8001 2.1032 0.9904 27 1 2.3746 1.9545 2.0694 28 1 3.5497 -0.0798 2.5985 29 1 4.1302 -0.2834 0.9116 30 1 2.7770 -2.6504 1.6962 31 1 2.9717 -2.2077 -0.0168 32 1 0.2902 -2.7678 1.3256 33 1 0.5743 -2.4763 -0.4072 34 1 1.9721 -4.4643 -0.4010 35 1 -0.6764 -4.9437 0.8003 36 1 -0.3916 -4.6522 -0.9324 37 1 1.0759 -6.6481 -1.0280 38 1 0.7916 -6.9403 0.7046 39 1 0.3162 -10.2469 -0.8457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693959535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:25 Heat of formation + Delta-G solvation = -13.512752 kcal Electronic energy + Delta-G solvation = -15559.444392 eV Core-core repulsion = 13115.007890 eV Total energy + Delta-G solvation = -2444.436502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41346 -36.05254 -33.25512 -32.24668 -31.77809 -29.13459 -26.54361 -25.71684 -23.77622 -21.78646 -21.10056 -20.62555 -19.79228 -16.62424 -16.26847 -15.63438 -15.27016 -14.50023 -14.22088 -14.07769 -13.63927 -13.32126 -12.96044 -12.87579 -12.61013 -12.16675 -12.05199 -11.51424 -11.32577 -11.22907 -11.08875 -10.93298 -10.84113 -10.68514 -10.59380 -10.42768 -9.88530 -9.29847 -9.10895 -8.44194 -8.30991 -7.69657 -5.95758 -3.98212 3.36106 3.40108 3.42697 3.84228 4.37728 4.48474 4.50028 4.75903 4.86731 5.08318 5.22004 5.27655 5.32549 5.39882 5.43095 5.51988 5.52655 5.66261 5.69767 5.72342 5.83772 5.90813 6.01391 6.07223 6.29385 6.37796 6.44961 6.52226 6.87748 6.97844 7.04555 7.57100 7.79369 7.89278 8.04934 8.14823 8.48708 9.08977 9.65156 11.15735 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.063896 B = 0.003941 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.109587 B = 7103.503400 C = 7415.198060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.041 3.959 4 C -0.143 4.143 5 C -0.125 4.125 6 C 0.072 3.928 7 H 0.055 0.945 8 C -0.100 4.100 9 C 0.059 3.941 10 N -0.694 5.694 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.023 0.977 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.335 0.665 35 H 0.055 0.945 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 21.037 3.307 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.253 5.253 3 C -0.087 4.087 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.036 4.036 7 H 0.073 0.927 8 C -0.139 4.139 9 C -0.071 4.071 10 N -0.325 5.325 11 C -0.062 4.062 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.561 20.451 3.506 21.244 hybrid contribution -1.385 0.167 -0.456 1.468 sum 3.176 20.618 3.050 21.083 Atomic orbital electron populations 1.22721 0.87682 1.02734 1.00445 1.63479 1.07905 1.13452 1.40493 1.22829 0.97819 0.89633 0.98391 1.22775 0.99863 0.97451 0.98047 1.22742 0.97724 0.94165 1.01638 1.22639 0.95390 0.94676 0.90903 0.92739 1.21521 0.98072 0.92187 1.02100 1.22013 0.96709 0.88837 0.99537 1.60611 1.12370 1.07889 1.51618 1.22131 0.89820 0.96939 0.97300 1.19066 0.96716 0.88055 0.97412 1.21158 0.94234 0.92948 1.47732 0.92850 1.25006 0.96084 0.97750 0.95541 1.69965 1.24711 1.08878 1.49747 0.86647 0.83640 0.78727 0.78902 1.20291 1.21272 1.20242 0.95798 0.91569 0.90362 0.90657 0.92969 0.90831 0.91717 0.90820 0.90396 0.90851 0.91494 0.92327 0.95023 0.84753 0.92604 0.96807 0.96804 0.95697 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.77 60.06 0.53 0.66 16 2 N -0.53 -5.97 4.94 -231.60 -1.14 -7.11 16 3 C 0.04 0.38 6.89 -2.84 -0.02 0.36 16 4 C -0.14 -1.15 6.94 -24.91 -0.17 -1.32 16 5 C -0.12 -1.14 6.50 -24.59 -0.16 -1.30 16 6 C 0.07 0.80 2.59 -66.19 -0.17 0.63 16 7 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 8 C -0.10 -1.29 5.20 -26.73 -0.14 -1.43 16 9 C 0.06 0.90 4.33 -3.82 -0.02 0.88 16 10 N -0.69 -13.07 6.50 -113.78 -0.74 -13.81 16 11 C 0.07 1.47 5.62 -3.83 -0.02 1.45 16 12 C 0.02 0.67 5.23 -27.89 -0.15 0.53 16 13 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.02 0.23 8.09 -51.92 -0.42 -0.19 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.92 5.28 -51.93 -0.27 0.65 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.44 7.56 -51.93 -0.39 0.05 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.03 0.50 6.41 -51.93 -0.33 0.16 16 34 H 0.34 6.15 8.73 -39.29 -0.34 5.80 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -30.63 307.84 -9.46 -40.09 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.20 Total: -0.62 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.73 Total: -13.48 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -1.15 Total: -47.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.63 -9.46 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.573 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds