Wall clock time and date at job start Mon Mar 30 2020 03:20:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.47446 * 111.00222 * 2 1
4 4 C 1.54310 * 107.23347 * 123.26192 * 3 2 1
5 5 C 1.55144 * 103.02064 * 22.28639 * 4 3 2
6 6 C 1.47844 * 111.00381 * 120.84666 * 2 1 3
7 7 H 1.08998 * 110.36895 * 332.57615 * 6 2 1
8 8 C 1.53000 * 110.37119 * 94.80156 * 6 2 1
9 9 C 1.53000 * 109.47128 * 294.77075 * 8 6 2
10 10 N 1.46905 * 109.47007 * 185.69378 * 9 8 6
11 11 C 1.46892 * 111.00082 * 180.02562 * 10 9 8
12 12 C 1.53002 * 109.47447 * 179.97438 * 11 10 9
13 13 C 1.50693 * 109.47486 * 179.97438 * 12 11 10
14 14 H 1.08003 * 119.99827 * 0.02562 * 13 12 11
15 15 C 1.37884 * 119.99974 * 179.97438 * 13 12 11
16 16 N 1.31510 * 119.99999 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 119.99616 * 180.02562 * 15 13 12
18 18 H 1.48496 * 109.47131 * 60.00092 * 17 15 13
19 19 H 1.48507 * 109.46744 * 180.02562 * 17 15 13
20 20 H 1.48496 * 109.47148 * 299.99964 * 17 15 13
21 21 H 1.09008 * 109.46759 * 305.34603 * 1 2 3
22 22 H 1.09002 * 109.47589 * 65.34033 * 1 2 3
23 23 H 1.08999 * 109.47449 * 185.34846 * 1 2 3
24 24 H 1.09005 * 109.88675 * 242.66794 * 3 2 1
25 25 H 1.08998 * 109.88454 * 3.69059 * 3 2 1
26 26 H 1.08996 * 110.70623 * 140.66680 * 4 3 2
27 27 H 1.09001 * 110.70673 * 263.90552 * 4 3 2
28 28 H 1.09002 * 110.99282 * 206.25604 * 5 4 3
29 29 H 1.08994 * 110.99065 * 82.43625 * 5 4 3
30 30 H 1.09007 * 109.46720 * 174.77452 * 8 6 2
31 31 H 1.08993 * 109.47346 * 54.77401 * 8 6 2
32 32 H 1.08998 * 109.47310 * 305.68823 * 9 8 6
33 33 H 1.08994 * 109.47045 * 65.69827 * 9 8 6
34 34 H 1.00903 * 110.99760 * 303.95599 * 10 9 8
35 35 H 1.09002 * 109.46973 * 299.99857 * 11 10 9
36 36 H 1.09000 * 109.47504 * 60.00103 * 11 10 9
37 37 H 1.08997 * 109.47201 * 300.00308 * 12 11 10
38 38 H 1.09000 * 109.46659 * 59.99616 * 12 11 10
39 39 H 0.96998 * 119.99453 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9974 1.3765 0.0000
4 6 2.9159 1.5136 1.2324
5 6 3.3049 0.0443 1.5436
6 6 1.9989 -0.7077 1.1850
7 1 1.2882 -0.6519 2.0095
8 6 2.3019 -2.1677 0.8420
9 6 0.9978 -2.8939 0.5061
10 7 1.2702 -4.3241 0.3102
11 6 0.0382 -5.0549 -0.0153
12 6 0.3615 -6.5373 -0.2123
13 6 -0.9025 -7.2871 -0.5456
14 1 -1.8423 -6.7591 -0.6109
15 6 -0.8589 -8.6472 -0.7683
16 7 0.2857 -9.2901 -0.6894
17 14 -2.4256 -9.5764 -1.1822
18 1 -3.0118 -9.0270 -2.4310
19 1 -2.1118 -11.0153 -1.3733
20 1 -3.3987 -9.4259 -0.0706
21 1 -0.3633 0.5946 0.8383
22 1 -0.3634 0.4288 -0.9339
23 1 -0.3634 -1.0232 0.0958
24 1 2.5697 1.5540 -0.9106
25 1 1.1754 2.0892 0.0660
26 1 3.8001 2.1032 0.9904
27 1 2.3746 1.9545 2.0694
28 1 3.5497 -0.0798 2.5985
29 1 4.1302 -0.2834 0.9116
30 1 2.7770 -2.6504 1.6962
31 1 2.9717 -2.2077 -0.0168
32 1 0.2902 -2.7678 1.3256
33 1 0.5743 -2.4763 -0.4072
34 1 1.9721 -4.4643 -0.4010
35 1 -0.6764 -4.9437 0.8003
36 1 -0.3916 -4.6522 -0.9324
37 1 1.0759 -6.6481 -1.0280
38 1 0.7916 -6.9403 0.7046
39 1 0.3162 -10.2469 -0.8457
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000693959535.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:25
Heat of formation + Delta-G solvation = -13.512752 kcal
Electronic energy + Delta-G solvation = -15559.444392 eV
Core-core repulsion = 13115.007890 eV
Total energy + Delta-G solvation = -2444.436502 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.41346 -36.05254 -33.25512 -32.24668 -31.77809 -29.13459 -26.54361 -25.71684
-23.77622 -21.78646 -21.10056 -20.62555 -19.79228 -16.62424 -16.26847 -15.63438
-15.27016 -14.50023 -14.22088 -14.07769 -13.63927 -13.32126 -12.96044 -12.87579
-12.61013 -12.16675 -12.05199 -11.51424 -11.32577 -11.22907 -11.08875 -10.93298
-10.84113 -10.68514 -10.59380 -10.42768 -9.88530 -9.29847 -9.10895 -8.44194
-8.30991 -7.69657 -5.95758 -3.98212 3.36106 3.40108 3.42697 3.84228
4.37728 4.48474 4.50028 4.75903 4.86731 5.08318 5.22004 5.27655
5.32549 5.39882 5.43095 5.51988 5.52655 5.66261 5.69767 5.72342
5.83772 5.90813 6.01391 6.07223 6.29385 6.37796 6.44961 6.52226
6.87748 6.97844 7.04555 7.57100 7.79369 7.89278 8.04934 8.14823
8.48708 9.08977 9.65156 11.15735
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.063896 B = 0.003941 C = 0.003775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 438.109587 B = 7103.503400 C = 7415.198060
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 N -0.529 5.529
3 C 0.041 3.959
4 C -0.143 4.143
5 C -0.125 4.125
6 C 0.072 3.928
7 H 0.055 0.945
8 C -0.100 4.100
9 C 0.059 3.941
10 N -0.694 5.694
11 C 0.066 3.934
12 C 0.025 3.975
13 C -0.522 4.522
14 H 0.053 0.947
15 C 0.057 3.943
16 N -0.894 5.894
17 Si 0.893 3.107
18 H -0.277 1.277
19 H -0.287 1.287
20 H -0.277 1.277
21 H 0.023 0.977
22 H 0.066 0.934
23 H 0.078 0.922
24 H 0.075 0.925
25 H 0.052 0.948
26 H 0.073 0.927
27 H 0.064 0.936
28 H 0.073 0.927
29 H 0.077 0.923
30 H 0.073 0.927
31 H 0.066 0.934
32 H 0.058 0.942
33 H 0.032 0.968
34 H 0.335 0.665
35 H 0.055 0.945
36 H 0.014 0.986
37 H 0.014 0.986
38 H 0.025 0.975
39 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.384 21.037 3.307 21.742
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 N -0.253 5.253
3 C -0.087 4.087
4 C -0.181 4.181
5 C -0.163 4.163
6 C -0.036 4.036
7 H 0.073 0.927
8 C -0.139 4.139
9 C -0.071 4.071
10 N -0.325 5.325
11 C -0.062 4.062
12 C -0.012 4.012
13 C -0.561 4.561
14 H 0.072 0.928
15 C -0.144 4.144
16 N -0.533 5.533
17 Si 0.721 3.279
18 H -0.203 1.203
19 H -0.213 1.213
20 H -0.202 1.202
21 H 0.042 0.958
22 H 0.084 0.916
23 H 0.096 0.904
24 H 0.093 0.907
25 H 0.070 0.930
26 H 0.092 0.908
27 H 0.083 0.917
28 H 0.092 0.908
29 H 0.096 0.904
30 H 0.091 0.909
31 H 0.085 0.915
32 H 0.077 0.923
33 H 0.050 0.950
34 H 0.152 0.848
35 H 0.074 0.926
36 H 0.032 0.968
37 H 0.032 0.968
38 H 0.043 0.957
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.561 20.451 3.506 21.244
hybrid contribution -1.385 0.167 -0.456 1.468
sum 3.176 20.618 3.050 21.083
Atomic orbital electron populations
1.22721 0.87682 1.02734 1.00445 1.63479 1.07905 1.13452 1.40493
1.22829 0.97819 0.89633 0.98391 1.22775 0.99863 0.97451 0.98047
1.22742 0.97724 0.94165 1.01638 1.22639 0.95390 0.94676 0.90903
0.92739 1.21521 0.98072 0.92187 1.02100 1.22013 0.96709 0.88837
0.99537 1.60611 1.12370 1.07889 1.51618 1.22131 0.89820 0.96939
0.97300 1.19066 0.96716 0.88055 0.97412 1.21158 0.94234 0.92948
1.47732 0.92850 1.25006 0.96084 0.97750 0.95541 1.69965 1.24711
1.08878 1.49747 0.86647 0.83640 0.78727 0.78902 1.20291 1.21272
1.20242 0.95798 0.91569 0.90362 0.90657 0.92969 0.90831 0.91717
0.90820 0.90396 0.90851 0.91494 0.92327 0.95023 0.84753 0.92604
0.96807 0.96804 0.95697 0.92958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.13 8.77 60.06 0.53 0.66 16
2 N -0.53 -5.97 4.94 -231.60 -1.14 -7.11 16
3 C 0.04 0.38 6.89 -2.84 -0.02 0.36 16
4 C -0.14 -1.15 6.94 -24.91 -0.17 -1.32 16
5 C -0.12 -1.14 6.50 -24.59 -0.16 -1.30 16
6 C 0.07 0.80 2.59 -66.19 -0.17 0.63 16
7 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16
8 C -0.10 -1.29 5.20 -26.73 -0.14 -1.43 16
9 C 0.06 0.90 4.33 -3.82 -0.02 0.88 16
10 N -0.69 -13.07 6.50 -113.78 -0.74 -13.81 16
11 C 0.07 1.47 5.62 -3.83 -0.02 1.45 16
12 C 0.02 0.67 5.23 -27.89 -0.15 0.53 16
13 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16
14 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16
15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
16 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16
17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
21 H 0.02 0.23 8.09 -51.92 -0.42 -0.19 16
22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
23 H 0.08 0.92 5.28 -51.93 -0.27 0.65 16
24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
25 H 0.05 0.44 7.56 -51.93 -0.39 0.05 16
26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16
30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
32 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16
33 H 0.03 0.50 6.41 -51.93 -0.33 0.16 16
34 H 0.34 6.15 8.73 -39.29 -0.34 5.80 16
35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16
37 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16
38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
LS Contribution 307.84 15.07 4.64 4.64
Total: -1.00 -30.63 307.84 -9.46 -40.09
By element:
Atomic # 1 Polarization: 6.58 SS G_CDS: -7.20 Total: -0.62 kcal
Atomic # 6 Polarization: -12.75 SS G_CDS: -0.73 Total: -13.48 kcal
Atomic # 7 Polarization: -46.49 SS G_CDS: -1.15 Total: -47.63 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -30.63 -9.46 -40.09 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000693959535.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.573 kcal
(2) G-P(sol) polarization free energy of solvation -30.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.057 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds