Wall clock time and date at job start Mon Mar 30 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47446 * 111.00222 * 2 1 4 4 C 1.54310 * 107.23347 * 123.26192 * 3 2 1 5 5 C 1.55144 * 103.02064 * 22.28639 * 4 3 2 6 6 C 1.47844 * 111.00381 * 120.84666 * 2 1 3 7 7 H 1.08998 * 110.36895 * 332.57615 * 6 2 1 8 8 C 1.53000 * 110.37119 * 94.80156 * 6 2 1 9 9 C 1.53000 * 109.47128 * 294.77075 * 8 6 2 10 10 N 1.46905 * 109.47007 * 185.69378 * 9 8 6 11 11 C 1.46892 * 111.00082 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47486 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99999 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99616 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47131 * 60.00092 * 17 15 13 19 19 H 1.48507 * 109.46744 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47148 * 299.99964 * 17 15 13 21 21 H 1.09008 * 109.46759 * 305.34603 * 1 2 3 22 22 H 1.09002 * 109.47589 * 65.34033 * 1 2 3 23 23 H 1.08999 * 109.47449 * 185.34846 * 1 2 3 24 24 H 1.09005 * 109.88675 * 242.66794 * 3 2 1 25 25 H 1.08998 * 109.88454 * 3.69059 * 3 2 1 26 26 H 1.08996 * 110.70623 * 140.66680 * 4 3 2 27 27 H 1.09001 * 110.70673 * 263.90552 * 4 3 2 28 28 H 1.09002 * 110.99282 * 206.25604 * 5 4 3 29 29 H 1.08994 * 110.99065 * 82.43625 * 5 4 3 30 30 H 1.09007 * 109.46720 * 174.77452 * 8 6 2 31 31 H 1.08993 * 109.47346 * 54.77401 * 8 6 2 32 32 H 1.08998 * 109.47310 * 305.68823 * 9 8 6 33 33 H 1.08994 * 109.47045 * 65.69827 * 9 8 6 34 34 H 1.00903 * 110.99760 * 303.95599 * 10 9 8 35 35 H 1.09002 * 109.46973 * 299.99857 * 11 10 9 36 36 H 1.09000 * 109.47504 * 60.00103 * 11 10 9 37 37 H 1.08997 * 109.47201 * 300.00308 * 12 11 10 38 38 H 1.09000 * 109.46659 * 59.99616 * 12 11 10 39 39 H 0.96998 * 119.99453 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2324 5 6 3.3049 0.0443 1.5436 6 6 1.9989 -0.7077 1.1850 7 1 1.2882 -0.6519 2.0095 8 6 2.3019 -2.1677 0.8420 9 6 0.9978 -2.8939 0.5061 10 7 1.2702 -4.3241 0.3102 11 6 0.0382 -5.0549 -0.0153 12 6 0.3615 -6.5373 -0.2123 13 6 -0.9025 -7.2871 -0.5456 14 1 -1.8423 -6.7591 -0.6109 15 6 -0.8589 -8.6472 -0.7683 16 7 0.2857 -9.2901 -0.6894 17 14 -2.4256 -9.5764 -1.1822 18 1 -3.0118 -9.0270 -2.4310 19 1 -2.1118 -11.0153 -1.3733 20 1 -3.3987 -9.4259 -0.0706 21 1 -0.3633 0.5946 0.8383 22 1 -0.3634 0.4288 -0.9339 23 1 -0.3634 -1.0232 0.0958 24 1 2.5697 1.5540 -0.9106 25 1 1.1754 2.0892 0.0660 26 1 3.8001 2.1032 0.9904 27 1 2.3746 1.9545 2.0694 28 1 3.5497 -0.0798 2.5985 29 1 4.1302 -0.2834 0.9116 30 1 2.7770 -2.6504 1.6962 31 1 2.9717 -2.2077 -0.0168 32 1 0.2902 -2.7678 1.3256 33 1 0.5743 -2.4763 -0.4072 34 1 1.9721 -4.4643 -0.4010 35 1 -0.6764 -4.9437 0.8003 36 1 -0.3916 -4.6522 -0.9324 37 1 1.0759 -6.6481 -1.0280 38 1 0.7916 -6.9403 0.7046 39 1 0.3162 -10.2469 -0.8457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693959535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:25 Heat of formation + Delta-G solvation = -34.619244 kcal Electronic energy + Delta-G solvation = -15560.359638 eV Core-core repulsion = 13115.007890 eV Total energy + Delta-G solvation = -2445.351748 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.24349 -37.60175 -35.22680 -33.27525 -33.00367 -30.80519 -27.82192 -26.62504 -25.59634 -22.93534 -22.48744 -21.87520 -20.79648 -18.50670 -17.51315 -16.75445 -16.48526 -16.44040 -15.24572 -15.20325 -15.05766 -14.70876 -14.11352 -13.96437 -13.91666 -13.53958 -13.24191 -13.11562 -12.80908 -12.50936 -12.33129 -12.11558 -12.10541 -12.02740 -11.74218 -11.61789 -11.48893 -11.37650 -11.10090 -10.56117 -9.27185 -9.25124 -8.20280 -6.32309 1.40267 1.44064 1.52028 2.40812 3.04016 3.12750 3.32527 3.74749 3.78975 4.07146 4.14739 4.34819 4.42073 4.44185 4.50448 4.51260 4.58611 4.61784 4.68543 4.77519 4.95042 4.96159 5.01163 5.02729 5.05226 5.11350 5.21825 5.33946 5.37913 5.44208 5.66766 5.78404 6.08003 6.14430 6.15820 6.29028 6.55229 6.84563 7.36878 8.91847 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.063896 B = 0.003941 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.109587 B = 7103.503400 C = 7415.198060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.547 5.547 3 C 0.038 3.962 4 C -0.136 4.136 5 C -0.123 4.123 6 C 0.073 3.927 7 H 0.053 0.947 8 C -0.092 4.092 9 C 0.065 3.935 10 N -0.700 5.700 11 C 0.084 3.916 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.266 1.266 21 H 0.032 0.968 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.338 0.662 35 H 0.056 0.944 36 H 0.016 0.984 37 H -0.009 1.009 38 H -0.006 1.006 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 22.279 3.417 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.271 5.271 3 C -0.089 4.089 4 C -0.174 4.174 5 C -0.161 4.161 6 C -0.035 4.035 7 H 0.071 0.929 8 C -0.130 4.130 9 C -0.064 4.064 10 N -0.330 5.330 11 C -0.045 4.045 12 C -0.006 4.006 13 C -0.586 4.586 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.051 0.949 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.155 0.845 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.009 0.991 38 H 0.013 0.987 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.859 21.722 3.619 22.357 hybrid contribution -1.117 -0.194 -0.492 1.236 sum 2.742 21.528 3.127 21.926 Atomic orbital electron populations 1.22679 0.87618 1.01994 1.01118 1.63438 1.08165 1.14874 1.40664 1.22887 0.98328 0.88631 0.99075 1.22758 1.00228 0.96819 0.97640 1.22738 0.96455 0.94616 1.02261 1.22586 0.96545 0.93561 0.90849 0.92872 1.21436 0.96401 0.93344 1.01821 1.22049 0.98247 0.86656 0.99473 1.60551 1.10964 1.10013 1.51522 1.21759 0.91086 0.94239 0.97368 1.18925 0.95553 0.91227 0.94904 1.21593 0.95098 0.93835 1.48105 0.92172 1.26007 0.99919 0.98818 0.95049 1.70105 1.27264 1.09374 1.50418 0.85447 0.78956 0.77133 0.79171 1.19094 1.20675 1.19101 0.94898 0.91061 0.91819 0.90634 0.92162 0.89360 0.91017 0.89738 0.90653 0.90962 0.91882 0.92321 0.95076 0.84506 0.92589 0.96613 0.99053 0.98712 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 8.77 127.69 1.12 1.41 16 2 N -0.55 -11.55 4.94 -886.64 -4.38 -15.93 16 3 C 0.04 0.63 6.89 86.64 0.60 1.23 16 4 C -0.14 -1.85 6.94 31.77 0.22 -1.62 16 5 C -0.12 -1.99 6.50 31.98 0.21 -1.78 16 6 C 0.07 1.52 2.59 45.39 0.12 1.63 16 7 H 0.05 1.12 7.81 -2.39 -0.02 1.10 16 8 C -0.09 -2.27 5.20 30.59 0.16 -2.12 16 9 C 0.06 1.95 4.33 86.30 0.37 2.32 16 10 N -0.70 -26.44 6.50 -513.89 -3.34 -29.79 16 11 C 0.08 3.76 5.62 86.31 0.49 4.25 16 12 C 0.03 1.74 5.23 29.85 0.16 1.90 16 13 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 0.00 5.46 84.66 0.46 0.47 16 16 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H 0.03 0.59 8.09 -2.38 -0.02 0.57 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.46 5.28 -2.39 -0.01 1.44 16 24 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 0.89 7.56 -2.39 -0.02 0.87 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 33 H 0.03 0.96 6.41 -2.39 -0.02 0.94 16 34 H 0.34 12.50 8.73 -89.69 -0.78 11.72 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -65.16 307.84 -1.07 -66.22 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.21 Total: 14.55 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.13 Total: -24.31 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -7.43 Total: -103.44 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.16 -1.07 -66.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693959535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.602 kcal (2) G-P(sol) polarization free energy of solvation -65.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds