Wall clock time and date at job start Mon Mar 30 2020 03:20:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.47446 * 111.00222 * 2 1
4 4 C 1.54310 * 107.23347 * 123.26192 * 3 2 1
5 5 C 1.55144 * 103.02064 * 22.28639 * 4 3 2
6 6 C 1.47844 * 111.00381 * 120.84666 * 2 1 3
7 7 H 1.08998 * 110.36895 * 332.57615 * 6 2 1
8 8 C 1.53000 * 110.37119 * 94.80156 * 6 2 1
9 9 C 1.53000 * 109.47128 * 294.77075 * 8 6 2
10 10 N 1.46905 * 109.47007 * 185.69378 * 9 8 6
11 11 C 1.46892 * 111.00082 * 180.02562 * 10 9 8
12 12 C 1.53002 * 109.47447 * 179.97438 * 11 10 9
13 13 C 1.50693 * 109.47486 * 179.97438 * 12 11 10
14 14 H 1.08003 * 119.99827 * 0.02562 * 13 12 11
15 15 C 1.37884 * 119.99974 * 179.97438 * 13 12 11
16 16 N 1.31510 * 119.99999 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 119.99616 * 180.02562 * 15 13 12
18 18 H 1.48496 * 109.47131 * 60.00092 * 17 15 13
19 19 H 1.48507 * 109.46744 * 180.02562 * 17 15 13
20 20 H 1.48496 * 109.47148 * 299.99964 * 17 15 13
21 21 H 1.09008 * 109.46759 * 305.34603 * 1 2 3
22 22 H 1.09002 * 109.47589 * 65.34033 * 1 2 3
23 23 H 1.08999 * 109.47449 * 185.34846 * 1 2 3
24 24 H 1.09005 * 109.88675 * 242.66794 * 3 2 1
25 25 H 1.08998 * 109.88454 * 3.69059 * 3 2 1
26 26 H 1.08996 * 110.70623 * 140.66680 * 4 3 2
27 27 H 1.09001 * 110.70673 * 263.90552 * 4 3 2
28 28 H 1.09002 * 110.99282 * 206.25604 * 5 4 3
29 29 H 1.08994 * 110.99065 * 82.43625 * 5 4 3
30 30 H 1.09007 * 109.46720 * 174.77452 * 8 6 2
31 31 H 1.08993 * 109.47346 * 54.77401 * 8 6 2
32 32 H 1.08998 * 109.47310 * 305.68823 * 9 8 6
33 33 H 1.08994 * 109.47045 * 65.69827 * 9 8 6
34 34 H 1.00903 * 110.99760 * 303.95599 * 10 9 8
35 35 H 1.09002 * 109.46973 * 299.99857 * 11 10 9
36 36 H 1.09000 * 109.47504 * 60.00103 * 11 10 9
37 37 H 1.08997 * 109.47201 * 300.00308 * 12 11 10
38 38 H 1.09000 * 109.46659 * 59.99616 * 12 11 10
39 39 H 0.96998 * 119.99453 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9974 1.3765 0.0000
4 6 2.9159 1.5136 1.2324
5 6 3.3049 0.0443 1.5436
6 6 1.9989 -0.7077 1.1850
7 1 1.2882 -0.6519 2.0095
8 6 2.3019 -2.1677 0.8420
9 6 0.9978 -2.8939 0.5061
10 7 1.2702 -4.3241 0.3102
11 6 0.0382 -5.0549 -0.0153
12 6 0.3615 -6.5373 -0.2123
13 6 -0.9025 -7.2871 -0.5456
14 1 -1.8423 -6.7591 -0.6109
15 6 -0.8589 -8.6472 -0.7683
16 7 0.2857 -9.2901 -0.6894
17 14 -2.4256 -9.5764 -1.1822
18 1 -3.0118 -9.0270 -2.4310
19 1 -2.1118 -11.0153 -1.3733
20 1 -3.3987 -9.4259 -0.0706
21 1 -0.3633 0.5946 0.8383
22 1 -0.3634 0.4288 -0.9339
23 1 -0.3634 -1.0232 0.0958
24 1 2.5697 1.5540 -0.9106
25 1 1.1754 2.0892 0.0660
26 1 3.8001 2.1032 0.9904
27 1 2.3746 1.9545 2.0694
28 1 3.5497 -0.0798 2.5985
29 1 4.1302 -0.2834 0.9116
30 1 2.7770 -2.6504 1.6962
31 1 2.9717 -2.2077 -0.0168
32 1 0.2902 -2.7678 1.3256
33 1 0.5743 -2.4763 -0.4072
34 1 1.9721 -4.4643 -0.4010
35 1 -0.6764 -4.9437 0.8003
36 1 -0.3916 -4.6522 -0.9324
37 1 1.0759 -6.6481 -1.0280
38 1 0.7916 -6.9403 0.7046
39 1 0.3162 -10.2469 -0.8457
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000693959535.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:25
Heat of formation + Delta-G solvation = -34.619244 kcal
Electronic energy + Delta-G solvation = -15560.359638 eV
Core-core repulsion = 13115.007890 eV
Total energy + Delta-G solvation = -2445.351748 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.24349 -37.60175 -35.22680 -33.27525 -33.00367 -30.80519 -27.82192 -26.62504
-25.59634 -22.93534 -22.48744 -21.87520 -20.79648 -18.50670 -17.51315 -16.75445
-16.48526 -16.44040 -15.24572 -15.20325 -15.05766 -14.70876 -14.11352 -13.96437
-13.91666 -13.53958 -13.24191 -13.11562 -12.80908 -12.50936 -12.33129 -12.11558
-12.10541 -12.02740 -11.74218 -11.61789 -11.48893 -11.37650 -11.10090 -10.56117
-9.27185 -9.25124 -8.20280 -6.32309 1.40267 1.44064 1.52028 2.40812
3.04016 3.12750 3.32527 3.74749 3.78975 4.07146 4.14739 4.34819
4.42073 4.44185 4.50448 4.51260 4.58611 4.61784 4.68543 4.77519
4.95042 4.96159 5.01163 5.02729 5.05226 5.11350 5.21825 5.33946
5.37913 5.44208 5.66766 5.78404 6.08003 6.14430 6.15820 6.29028
6.55229 6.84563 7.36878 8.91847
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.063896 B = 0.003941 C = 0.003775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 438.109587 B = 7103.503400 C = 7415.198060
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 N -0.547 5.547
3 C 0.038 3.962
4 C -0.136 4.136
5 C -0.123 4.123
6 C 0.073 3.927
7 H 0.053 0.947
8 C -0.092 4.092
9 C 0.065 3.935
10 N -0.700 5.700
11 C 0.084 3.916
12 C 0.031 3.969
13 C -0.548 4.548
14 H 0.060 0.940
15 C 0.000 4.000
16 N -0.932 5.932
17 Si 0.969 3.031
18 H -0.266 1.266
19 H -0.281 1.281
20 H -0.266 1.266
21 H 0.032 0.968
22 H 0.071 0.929
23 H 0.063 0.937
24 H 0.075 0.925
25 H 0.060 0.940
26 H 0.088 0.912
27 H 0.071 0.929
28 H 0.084 0.916
29 H 0.075 0.925
30 H 0.072 0.928
31 H 0.062 0.938
32 H 0.058 0.942
33 H 0.031 0.969
34 H 0.338 0.662
35 H 0.056 0.944
36 H 0.016 0.984
37 H -0.009 1.009
38 H -0.006 1.006
39 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.678 22.279 3.417 22.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 N -0.271 5.271
3 C -0.089 4.089
4 C -0.174 4.174
5 C -0.161 4.161
6 C -0.035 4.035
7 H 0.071 0.929
8 C -0.130 4.130
9 C -0.064 4.064
10 N -0.330 5.330
11 C -0.045 4.045
12 C -0.006 4.006
13 C -0.586 4.586
14 H 0.078 0.922
15 C -0.198 4.198
16 N -0.572 5.572
17 Si 0.793 3.207
18 H -0.191 1.191
19 H -0.207 1.207
20 H -0.191 1.191
21 H 0.051 0.949
22 H 0.089 0.911
23 H 0.082 0.918
24 H 0.094 0.906
25 H 0.078 0.922
26 H 0.106 0.894
27 H 0.090 0.910
28 H 0.103 0.897
29 H 0.093 0.907
30 H 0.090 0.910
31 H 0.081 0.919
32 H 0.077 0.923
33 H 0.049 0.951
34 H 0.155 0.845
35 H 0.074 0.926
36 H 0.034 0.966
37 H 0.009 0.991
38 H 0.013 0.987
39 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 3.859 21.722 3.619 22.357
hybrid contribution -1.117 -0.194 -0.492 1.236
sum 2.742 21.528 3.127 21.926
Atomic orbital electron populations
1.22679 0.87618 1.01994 1.01118 1.63438 1.08165 1.14874 1.40664
1.22887 0.98328 0.88631 0.99075 1.22758 1.00228 0.96819 0.97640
1.22738 0.96455 0.94616 1.02261 1.22586 0.96545 0.93561 0.90849
0.92872 1.21436 0.96401 0.93344 1.01821 1.22049 0.98247 0.86656
0.99473 1.60551 1.10964 1.10013 1.51522 1.21759 0.91086 0.94239
0.97368 1.18925 0.95553 0.91227 0.94904 1.21593 0.95098 0.93835
1.48105 0.92172 1.26007 0.99919 0.98818 0.95049 1.70105 1.27264
1.09374 1.50418 0.85447 0.78956 0.77133 0.79171 1.19094 1.20675
1.19101 0.94898 0.91061 0.91819 0.90634 0.92162 0.89360 0.91017
0.89738 0.90653 0.90962 0.91882 0.92321 0.95076 0.84506 0.92589
0.96613 0.99053 0.98712 0.92672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.29 8.77 127.69 1.12 1.41 16
2 N -0.55 -11.55 4.94 -886.64 -4.38 -15.93 16
3 C 0.04 0.63 6.89 86.64 0.60 1.23 16
4 C -0.14 -1.85 6.94 31.77 0.22 -1.62 16
5 C -0.12 -1.99 6.50 31.98 0.21 -1.78 16
6 C 0.07 1.52 2.59 45.39 0.12 1.63 16
7 H 0.05 1.12 7.81 -2.39 -0.02 1.10 16
8 C -0.09 -2.27 5.20 30.59 0.16 -2.12 16
9 C 0.06 1.95 4.33 86.30 0.37 2.32 16
10 N -0.70 -26.44 6.50 -513.89 -3.34 -29.79 16
11 C 0.08 3.76 5.62 86.31 0.49 4.25 16
12 C 0.03 1.74 5.23 29.85 0.16 1.90 16
13 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16
14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16
15 C 0.00 0.00 5.46 84.66 0.46 0.47 16
16 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16
17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16
18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
21 H 0.03 0.59 8.09 -2.38 -0.02 0.57 16
22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
23 H 0.06 1.46 5.28 -2.39 -0.01 1.44 16
24 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16
25 H 0.06 0.89 7.56 -2.39 -0.02 0.87 16
26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
29 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16
30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16
31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16
33 H 0.03 0.96 6.41 -2.39 -0.02 0.94 16
34 H 0.34 12.50 8.73 -89.69 -0.78 11.72 16
35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16
Total: -1.00 -65.16 307.84 -1.07 -66.22
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: 0.21 Total: 14.55 kcal
Atomic # 6 Polarization: -28.44 SS G_CDS: 4.13 Total: -24.31 kcal
Atomic # 7 Polarization: -96.01 SS G_CDS: -7.43 Total: -103.44 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal
Total: -65.16 -1.07 -66.22 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000693959535.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.602 kcal
(2) G-P(sol) polarization free energy of solvation -65.156 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds