Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00134 * 2 1 4 4 C 1.50705 * 109.46943 * 293.94882 * 3 2 1 5 5 H 1.08002 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00195 * 179.97438 * 4 3 2 7 7 N 1.31525 * 119.99760 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00301 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47102 * 60.00356 * 8 6 4 10 10 H 1.48503 * 109.46957 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47036 * 300.00458 * 8 6 4 12 12 C 1.46905 * 110.99937 * 123.95067 * 2 1 3 13 13 C 1.52998 * 109.46981 * 66.04910 * 12 2 1 14 14 C 1.52996 * 109.47089 * 180.02562 * 13 12 2 15 15 C 1.53118 * 109.52328 * 174.99886 * 14 13 12 16 16 C 1.53034 * 109.28068 * 177.55504 * 15 14 13 17 17 N 1.46848 * 109.52504 * 300.82023 * 16 15 14 18 18 C 1.46847 * 111.19556 * 61.74015 * 17 16 15 19 19 C 1.53044 * 109.52516 * 298.25761 * 18 17 16 20 20 H 1.08995 * 109.47060 * 296.05040 * 1 2 3 21 21 H 1.09003 * 109.46735 * 56.04526 * 1 2 3 22 22 H 1.08998 * 109.47160 * 176.04494 * 1 2 3 23 23 H 1.08996 * 109.47377 * 53.94803 * 3 2 1 24 24 H 1.08998 * 109.47154 * 173.95552 * 3 2 1 25 25 H 0.96994 * 119.99919 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47126 * 306.04427 * 12 2 1 27 27 H 1.09002 * 109.46614 * 186.04812 * 12 2 1 28 28 H 1.08997 * 109.47326 * 59.99326 * 13 12 2 29 29 H 1.09006 * 109.47071 * 299.99847 * 13 12 2 30 30 H 1.08992 * 109.57558 * 54.83791 * 14 13 12 31 31 H 1.09001 * 109.50624 * 57.61525 * 15 14 13 32 32 H 1.08998 * 109.50047 * 297.49982 * 15 14 13 33 33 H 1.09000 * 109.46341 * 180.80474 * 16 15 14 34 34 H 1.08999 * 109.46274 * 60.83372 * 16 15 14 35 35 H 1.00901 * 111.00066 * 185.83397 * 17 16 15 36 36 H 1.08999 * 109.46628 * 58.27319 * 18 17 16 37 37 H 1.09003 * 109.46158 * 178.24166 * 18 17 16 38 38 H 1.08996 * 109.50067 * 299.23984 * 19 18 17 39 39 H 1.08993 * 109.50192 * 179.12052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5114 -2.0486 6 6 2.0269 3.3494 -1.5287 7 7 2.7120 4.0019 -0.6151 8 14 1.5820 4.1871 -3.1379 9 1 0.1048 4.2236 -3.2851 10 1 2.1143 5.5735 -3.1379 11 1 2.1737 3.4301 -4.2701 12 6 1.9954 -0.7659 1.1377 13 6 1.6315 -2.2426 0.9704 14 6 2.1792 -3.0402 2.1556 15 6 1.7103 -4.4943 2.0542 16 6 2.3108 -5.3005 3.2081 17 7 3.7763 -5.2343 3.1426 18 6 4.2523 -3.8524 3.2854 19 6 3.7098 -3.0030 2.1337 20 1 -0.3633 0.4513 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3444 0.1082 25 1 2.9866 4.9179 -0.7771 26 1 1.5611 -0.3871 2.0628 27 1 3.0797 -0.6610 1.1757 28 1 2.0657 -2.6213 0.0452 29 1 0.5471 -2.3475 0.9324 30 1 1.8175 -2.6050 3.0871 31 1 2.0391 -4.9174 1.1050 32 1 0.6225 -4.5307 2.1122 33 1 1.9904 -6.3394 3.1307 34 1 1.9706 -4.8854 4.1568 35 1 4.1968 -5.8350 3.8358 36 1 3.9030 -3.4441 4.2337 37 1 5.3421 -3.8397 3.2641 38 1 4.0700 -3.4026 1.1858 39 1 4.0505 -1.9741 2.2486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702624403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = -16.886109 kcal Electronic energy + Delta-G solvation = -15908.955679 eV Core-core repulsion = 13464.372898 eV Total energy + Delta-G solvation = -2444.582781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.93703 -36.64819 -33.70604 -32.32810 -30.85648 -28.84836 -26.92307 -25.43686 -23.33796 -22.85518 -21.08302 -19.81292 -19.59776 -16.73180 -16.27490 -15.03218 -14.73621 -14.67727 -14.34617 -14.01737 -13.86832 -13.54105 -12.89828 -12.58755 -12.39909 -12.10589 -11.85022 -11.42359 -11.22230 -11.15188 -10.85836 -10.72076 -10.62609 -10.46233 -10.38016 -10.20041 -9.96997 -9.63038 -9.14220 -8.59652 -8.39922 -7.16633 -5.99199 -4.00390 3.35862 3.39474 3.42816 4.09411 4.44968 4.73425 4.81451 4.86446 5.16847 5.20232 5.32859 5.36304 5.45820 5.49276 5.62474 5.70878 5.74607 5.85671 5.99244 6.04995 6.10407 6.16871 6.27041 6.28469 6.37148 6.44721 6.62037 6.70794 6.82225 6.90039 7.22390 7.35170 7.39978 7.84587 8.14626 8.26753 8.61539 9.07247 9.63595 11.11778 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056283 B = 0.004659 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.364475 B = 6007.969193 C = 6283.433172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.542 5.542 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.056 3.944 13 C -0.108 4.108 14 C -0.087 4.087 15 C -0.112 4.112 16 C 0.058 3.942 17 N -0.691 5.691 18 C 0.057 3.943 19 C -0.114 4.114 20 H 0.008 0.992 21 H 0.072 0.928 22 H 0.046 0.954 23 H -0.011 1.011 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.338 0.662 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -16.050 8.178 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.266 5.266 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.106 4.106 15 C -0.150 4.150 16 C -0.071 4.071 17 N -0.322 5.322 18 C -0.072 4.072 19 C -0.152 4.152 20 H 0.026 0.974 21 H 0.091 0.909 22 H 0.064 0.936 23 H 0.007 0.993 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.155 0.845 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.151 -16.063 7.091 17.559 hybrid contribution -0.599 1.170 0.965 1.631 sum -0.751 -14.893 8.056 16.949 Atomic orbital electron populations 1.22233 0.89236 0.99431 1.00292 1.62103 1.06762 1.17685 1.40090 1.19720 0.95311 0.81774 0.96481 1.21151 1.34734 0.96903 1.01746 0.91926 1.24996 0.95341 0.97344 0.96983 1.69957 1.38460 1.11469 1.34118 0.86556 0.78672 0.78314 0.83839 1.20304 1.21371 1.20143 1.22092 0.99930 0.93023 0.92248 1.21620 1.00382 0.94899 0.97645 1.21183 0.95495 0.94935 0.98984 1.21637 0.99423 0.94993 0.98913 1.21923 0.87799 1.00018 0.97371 1.60283 1.07012 1.09494 1.55421 1.21961 0.99591 0.88308 0.97346 1.21696 0.95211 0.99440 0.98837 0.97364 0.90923 0.93552 0.99329 0.95330 0.92921 0.96496 0.91451 0.91265 0.92344 0.91996 0.91059 0.91808 0.91131 0.95524 0.84475 0.95474 0.90953 0.90968 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.14 60.06 0.55 1.29 16 2 N -0.54 -12.17 4.75 -244.37 -1.16 -13.33 16 3 C 0.19 5.19 4.72 -4.97 -0.02 5.16 16 4 C -0.51 -14.60 8.46 -34.44 -0.29 -14.89 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.06 1.03 4.72 -3.82 -0.02 1.01 16 13 C -0.11 -1.61 4.61 -26.73 -0.12 -1.73 16 14 C -0.09 -1.09 2.25 -90.50 -0.20 -1.29 16 15 C -0.11 -1.23 5.38 -26.65 -0.14 -1.37 16 16 C 0.06 0.57 6.55 -3.83 -0.03 0.54 16 17 N -0.69 -6.96 6.85 -113.81 -0.78 -7.73 16 18 C 0.06 0.60 6.55 -3.83 -0.03 0.58 16 19 C -0.11 -1.41 5.08 -26.65 -0.14 -1.55 16 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 21 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 22 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16 23 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 24 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.32 8.12 -51.93 -0.42 -0.11 16 27 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.86 6.55 -51.93 -0.34 0.52 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.34 2.71 8.90 -39.29 -0.35 2.36 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.92 6.71 -51.93 -0.35 0.58 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -30.36 301.49 -9.27 -39.63 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -7.05 Total: -2.79 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.54 Total: -10.77 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -1.20 Total: -47.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.36 -9.27 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702624403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.748 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds