Wall clock time and date at job start Mon Mar 30 2020 03:23:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46902 * 111.00134 * 2 1
4 4 C 1.50705 * 109.46943 * 293.94882 * 3 2 1
5 5 H 1.08002 * 120.00198 * 0.02562 * 4 3 2
6 6 C 1.37875 * 120.00195 * 179.97438 * 4 3 2
7 7 N 1.31525 * 119.99760 * 0.02562 * 6 4 3
8 8 Si 1.86798 * 120.00301 * 180.02562 * 6 4 3
9 9 H 1.48498 * 109.47102 * 60.00356 * 8 6 4
10 10 H 1.48503 * 109.46957 * 180.02562 * 8 6 4
11 11 H 1.48500 * 109.47036 * 300.00458 * 8 6 4
12 12 C 1.46905 * 110.99937 * 123.95067 * 2 1 3
13 13 C 1.52998 * 109.46981 * 66.04910 * 12 2 1
14 14 C 1.52996 * 109.47089 * 180.02562 * 13 12 2
15 15 C 1.53118 * 109.52328 * 174.99886 * 14 13 12
16 16 C 1.53034 * 109.28068 * 177.55504 * 15 14 13
17 17 N 1.46848 * 109.52504 * 300.82023 * 16 15 14
18 18 C 1.46847 * 111.19556 * 61.74015 * 17 16 15
19 19 C 1.53044 * 109.52516 * 298.25761 * 18 17 16
20 20 H 1.08995 * 109.47060 * 296.05040 * 1 2 3
21 21 H 1.09003 * 109.46735 * 56.04526 * 1 2 3
22 22 H 1.08998 * 109.47160 * 176.04494 * 1 2 3
23 23 H 1.08996 * 109.47377 * 53.94803 * 3 2 1
24 24 H 1.08998 * 109.47154 * 173.95552 * 3 2 1
25 25 H 0.96994 * 119.99919 * 179.97438 * 7 6 4
26 26 H 1.08995 * 109.47126 * 306.04427 * 12 2 1
27 27 H 1.09002 * 109.46614 * 186.04812 * 12 2 1
28 28 H 1.08997 * 109.47326 * 59.99326 * 13 12 2
29 29 H 1.09006 * 109.47071 * 299.99847 * 13 12 2
30 30 H 1.08992 * 109.57558 * 54.83791 * 14 13 12
31 31 H 1.09001 * 109.50624 * 57.61525 * 15 14 13
32 32 H 1.08998 * 109.50047 * 297.49982 * 15 14 13
33 33 H 1.09000 * 109.46341 * 180.80474 * 16 15 14
34 34 H 1.08999 * 109.46274 * 60.83372 * 16 15 14
35 35 H 1.00901 * 111.00066 * 185.83397 * 17 16 15
36 36 H 1.08999 * 109.46628 * 58.27319 * 18 17 16
37 37 H 1.09003 * 109.46158 * 178.24166 * 18 17 16
38 38 H 1.08996 * 109.50067 * 299.23984 * 19 18 17
39 39 H 1.08993 * 109.50192 * 179.12052 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 -1.2985
5 1 1.0741 1.5114 -2.0486
6 6 2.0269 3.3494 -1.5287
7 7 2.7120 4.0019 -0.6151
8 14 1.5820 4.1871 -3.1379
9 1 0.1048 4.2236 -3.2851
10 1 2.1143 5.5735 -3.1379
11 1 2.1737 3.4301 -4.2701
12 6 1.9954 -0.7659 1.1377
13 6 1.6315 -2.2426 0.9704
14 6 2.1792 -3.0402 2.1556
15 6 1.7103 -4.4943 2.0542
16 6 2.3108 -5.3005 3.2081
17 7 3.7763 -5.2343 3.1426
18 6 4.2523 -3.8524 3.2854
19 6 3.7098 -3.0030 2.1337
20 1 -0.3633 0.4513 0.9232
21 1 -0.3633 0.5740 -0.8525
22 1 -0.3633 -1.0252 -0.0709
23 1 1.5611 1.9274 0.8308
24 1 3.0797 1.3444 0.1082
25 1 2.9866 4.9179 -0.7771
26 1 1.5611 -0.3871 2.0628
27 1 3.0797 -0.6610 1.1757
28 1 2.0657 -2.6213 0.0452
29 1 0.5471 -2.3475 0.9324
30 1 1.8175 -2.6050 3.0871
31 1 2.0391 -4.9174 1.1050
32 1 0.6225 -4.5307 2.1122
33 1 1.9904 -6.3394 3.1307
34 1 1.9706 -4.8854 4.1568
35 1 4.1968 -5.8350 3.8358
36 1 3.9030 -3.4441 4.2337
37 1 5.3421 -3.8397 3.2641
38 1 4.0700 -3.4026 1.1858
39 1 4.0505 -1.9741 2.2486
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000702624403.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:51
Heat of formation + Delta-G solvation = -16.886109 kcal
Electronic energy + Delta-G solvation = -15908.955679 eV
Core-core repulsion = 13464.372898 eV
Total energy + Delta-G solvation = -2444.582781 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.93703 -36.64819 -33.70604 -32.32810 -30.85648 -28.84836 -26.92307 -25.43686
-23.33796 -22.85518 -21.08302 -19.81292 -19.59776 -16.73180 -16.27490 -15.03218
-14.73621 -14.67727 -14.34617 -14.01737 -13.86832 -13.54105 -12.89828 -12.58755
-12.39909 -12.10589 -11.85022 -11.42359 -11.22230 -11.15188 -10.85836 -10.72076
-10.62609 -10.46233 -10.38016 -10.20041 -9.96997 -9.63038 -9.14220 -8.59652
-8.39922 -7.16633 -5.99199 -4.00390 3.35862 3.39474 3.42816 4.09411
4.44968 4.73425 4.81451 4.86446 5.16847 5.20232 5.32859 5.36304
5.45820 5.49276 5.62474 5.70878 5.74607 5.85671 5.99244 6.04995
6.10407 6.16871 6.27041 6.28469 6.37148 6.44721 6.62037 6.70794
6.82225 6.90039 7.22390 7.35170 7.39978 7.84587 8.14626 8.26753
8.61539 9.07247 9.63595 11.11778
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.056283 B = 0.004659 C = 0.004455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 497.364475 B = 6007.969193 C = 6283.433172
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.542 5.542
3 C 0.192 3.808
4 C -0.507 4.507
5 H 0.063 0.937
6 C 0.054 3.946
7 N -0.900 5.900
8 Si 0.898 3.102
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.056 3.944
13 C -0.108 4.108
14 C -0.087 4.087
15 C -0.112 4.112
16 C 0.058 3.942
17 N -0.691 5.691
18 C 0.057 3.943
19 C -0.114 4.114
20 H 0.008 0.992
21 H 0.072 0.928
22 H 0.046 0.954
23 H -0.011 1.011
24 H 0.029 0.971
25 H 0.261 0.739
26 H 0.017 0.983
27 H 0.067 0.933
28 H 0.069 0.931
29 H 0.058 0.942
30 H 0.062 0.938
31 H 0.071 0.929
32 H 0.063 0.937
33 H 0.070 0.930
34 H 0.027 0.973
35 H 0.338 0.662
36 H 0.027 0.973
37 H 0.072 0.928
38 H 0.072 0.928
39 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.412 -16.050 8.178 18.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 N -0.266 5.266
3 C 0.067 3.933
4 C -0.545 4.545
5 H 0.081 0.919
6 C -0.147 4.147
7 N -0.540 5.540
8 Si 0.726 3.274
9 H -0.203 1.203
10 H -0.214 1.214
11 H -0.201 1.201
12 C -0.073 4.073
13 C -0.145 4.145
14 C -0.106 4.106
15 C -0.150 4.150
16 C -0.071 4.071
17 N -0.322 5.322
18 C -0.072 4.072
19 C -0.152 4.152
20 H 0.026 0.974
21 H 0.091 0.909
22 H 0.064 0.936
23 H 0.007 0.993
24 H 0.047 0.953
25 H 0.071 0.929
26 H 0.035 0.965
27 H 0.085 0.915
28 H 0.087 0.913
29 H 0.077 0.923
30 H 0.080 0.920
31 H 0.089 0.911
32 H 0.082 0.918
33 H 0.089 0.911
34 H 0.045 0.955
35 H 0.155 0.845
36 H 0.045 0.955
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -0.151 -16.063 7.091 17.559
hybrid contribution -0.599 1.170 0.965 1.631
sum -0.751 -14.893 8.056 16.949
Atomic orbital electron populations
1.22233 0.89236 0.99431 1.00292 1.62103 1.06762 1.17685 1.40090
1.19720 0.95311 0.81774 0.96481 1.21151 1.34734 0.96903 1.01746
0.91926 1.24996 0.95341 0.97344 0.96983 1.69957 1.38460 1.11469
1.34118 0.86556 0.78672 0.78314 0.83839 1.20304 1.21371 1.20143
1.22092 0.99930 0.93023 0.92248 1.21620 1.00382 0.94899 0.97645
1.21183 0.95495 0.94935 0.98984 1.21637 0.99423 0.94993 0.98913
1.21923 0.87799 1.00018 0.97371 1.60283 1.07012 1.09494 1.55421
1.21961 0.99591 0.88308 0.97346 1.21696 0.95211 0.99440 0.98837
0.97364 0.90923 0.93552 0.99329 0.95330 0.92921 0.96496 0.91451
0.91265 0.92344 0.91996 0.91059 0.91808 0.91131 0.95524 0.84475
0.95474 0.90953 0.90968 0.91078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.75 9.14 60.06 0.55 1.29 16
2 N -0.54 -12.17 4.75 -244.37 -1.16 -13.33 16
3 C 0.19 5.19 4.72 -4.97 -0.02 5.16 16
4 C -0.51 -14.60 8.46 -34.44 -0.29 -14.89 16
5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16
6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
7 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16
8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16
9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
12 C 0.06 1.03 4.72 -3.82 -0.02 1.01 16
13 C -0.11 -1.61 4.61 -26.73 -0.12 -1.73 16
14 C -0.09 -1.09 2.25 -90.50 -0.20 -1.29 16
15 C -0.11 -1.23 5.38 -26.65 -0.14 -1.37 16
16 C 0.06 0.57 6.55 -3.83 -0.03 0.54 16
17 N -0.69 -6.96 6.85 -113.81 -0.78 -7.73 16
18 C 0.06 0.60 6.55 -3.83 -0.03 0.58 16
19 C -0.11 -1.41 5.08 -26.65 -0.14 -1.55 16
20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16
21 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16
22 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16
23 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16
24 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16
25 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16
26 H 0.02 0.32 8.12 -51.93 -0.42 -0.11 16
27 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16
28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
29 H 0.06 0.86 6.55 -51.93 -0.34 0.52 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16
35 H 0.34 2.71 8.90 -39.29 -0.35 2.36 16
36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16
37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
39 H 0.07 0.92 6.71 -51.93 -0.35 0.58 16
LS Contribution 301.49 15.07 4.54 4.54
Total: -1.00 -30.36 301.49 -9.27 -39.63
By element:
Atomic # 1 Polarization: 4.26 SS G_CDS: -7.05 Total: -2.79 kcal
Atomic # 6 Polarization: -10.23 SS G_CDS: -0.54 Total: -10.77 kcal
Atomic # 7 Polarization: -46.35 SS G_CDS: -1.20 Total: -47.56 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -30.36 -9.27 -39.63 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000702624403.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.748 kcal
(2) G-P(sol) polarization free energy of solvation -30.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds