Wall clock time and date at job start Mon Mar 30 2020 03:23:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46902 * 111.00134 * 2 1
4 4 C 1.50705 * 109.46943 * 293.94882 * 3 2 1
5 5 H 1.08002 * 120.00198 * 0.02562 * 4 3 2
6 6 C 1.37875 * 120.00195 * 179.97438 * 4 3 2
7 7 N 1.31525 * 119.99760 * 0.02562 * 6 4 3
8 8 Si 1.86798 * 120.00301 * 180.02562 * 6 4 3
9 9 H 1.48498 * 109.47102 * 60.00356 * 8 6 4
10 10 H 1.48503 * 109.46957 * 180.02562 * 8 6 4
11 11 H 1.48500 * 109.47036 * 300.00458 * 8 6 4
12 12 C 1.46905 * 110.99937 * 123.95067 * 2 1 3
13 13 C 1.52998 * 109.46981 * 66.04910 * 12 2 1
14 14 C 1.52996 * 109.47089 * 180.02562 * 13 12 2
15 15 C 1.53118 * 109.52328 * 174.99886 * 14 13 12
16 16 C 1.53034 * 109.28068 * 177.55504 * 15 14 13
17 17 N 1.46848 * 109.52504 * 300.82023 * 16 15 14
18 18 C 1.46847 * 111.19556 * 61.74015 * 17 16 15
19 19 C 1.53044 * 109.52516 * 298.25761 * 18 17 16
20 20 H 1.08995 * 109.47060 * 296.05040 * 1 2 3
21 21 H 1.09003 * 109.46735 * 56.04526 * 1 2 3
22 22 H 1.08998 * 109.47160 * 176.04494 * 1 2 3
23 23 H 1.08996 * 109.47377 * 53.94803 * 3 2 1
24 24 H 1.08998 * 109.47154 * 173.95552 * 3 2 1
25 25 H 0.96994 * 119.99919 * 179.97438 * 7 6 4
26 26 H 1.08995 * 109.47126 * 306.04427 * 12 2 1
27 27 H 1.09002 * 109.46614 * 186.04812 * 12 2 1
28 28 H 1.08997 * 109.47326 * 59.99326 * 13 12 2
29 29 H 1.09006 * 109.47071 * 299.99847 * 13 12 2
30 30 H 1.08992 * 109.57558 * 54.83791 * 14 13 12
31 31 H 1.09001 * 109.50624 * 57.61525 * 15 14 13
32 32 H 1.08998 * 109.50047 * 297.49982 * 15 14 13
33 33 H 1.09000 * 109.46341 * 180.80474 * 16 15 14
34 34 H 1.08999 * 109.46274 * 60.83372 * 16 15 14
35 35 H 1.00901 * 111.00066 * 185.83397 * 17 16 15
36 36 H 1.08999 * 109.46628 * 58.27319 * 18 17 16
37 37 H 1.09003 * 109.46158 * 178.24166 * 18 17 16
38 38 H 1.08996 * 109.50067 * 299.23984 * 19 18 17
39 39 H 1.08993 * 109.50192 * 179.12052 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 -1.2985
5 1 1.0741 1.5114 -2.0486
6 6 2.0269 3.3494 -1.5287
7 7 2.7120 4.0019 -0.6151
8 14 1.5820 4.1871 -3.1379
9 1 0.1048 4.2236 -3.2851
10 1 2.1143 5.5735 -3.1379
11 1 2.1737 3.4301 -4.2701
12 6 1.9954 -0.7659 1.1377
13 6 1.6315 -2.2426 0.9704
14 6 2.1792 -3.0402 2.1556
15 6 1.7103 -4.4943 2.0542
16 6 2.3108 -5.3005 3.2081
17 7 3.7763 -5.2343 3.1426
18 6 4.2523 -3.8524 3.2854
19 6 3.7098 -3.0030 2.1337
20 1 -0.3633 0.4513 0.9232
21 1 -0.3633 0.5740 -0.8525
22 1 -0.3633 -1.0252 -0.0709
23 1 1.5611 1.9274 0.8308
24 1 3.0797 1.3444 0.1082
25 1 2.9866 4.9179 -0.7771
26 1 1.5611 -0.3871 2.0628
27 1 3.0797 -0.6610 1.1757
28 1 2.0657 -2.6213 0.0452
29 1 0.5471 -2.3475 0.9324
30 1 1.8175 -2.6050 3.0871
31 1 2.0391 -4.9174 1.1050
32 1 0.6225 -4.5307 2.1122
33 1 1.9904 -6.3394 3.1307
34 1 1.9706 -4.8854 4.1568
35 1 4.1968 -5.8350 3.8358
36 1 3.9030 -3.4441 4.2337
37 1 5.3421 -3.8397 3.2641
38 1 4.0700 -3.4026 1.1858
39 1 4.0505 -1.9741 2.2486
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000702624403.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:50
Heat of formation + Delta-G solvation = -38.167383 kcal
Electronic energy + Delta-G solvation = -15909.878504 eV
Core-core repulsion = 13464.372898 eV
Total energy + Delta-G solvation = -2445.505607 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.94540 -38.26736 -35.17370 -34.17850 -31.72133 -30.34245 -28.78649 -27.08010
-24.81651 -23.83350 -22.58624 -21.37050 -20.56076 -18.49407 -17.58405 -16.80613
-16.27844 -16.01705 -15.51017 -15.33991 -15.06287 -14.89050 -14.30873 -13.88395
-13.76241 -13.67515 -13.14996 -12.94364 -12.83758 -12.66228 -12.53342 -12.22769
-12.10603 -12.05607 -11.76544 -11.54158 -11.39134 -11.06066 -10.89681 -10.61907
-9.36856 -9.02404 -8.21061 -6.31899 1.40863 1.44734 1.52645 2.40325
3.11004 3.31269 3.34169 3.81923 3.91994 3.95974 4.25430 4.33396
4.40503 4.50527 4.54983 4.59030 4.63835 4.73477 4.75126 4.77506
4.95221 4.98576 5.02320 5.08829 5.14111 5.18201 5.24855 5.27656
5.33054 5.38831 5.57883 5.64867 6.04497 6.10081 6.33241 6.55520
6.64791 6.84255 7.38029 8.90112
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.056283 B = 0.004659 C = 0.004455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 497.364475 B = 6007.969193 C = 6283.433172
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 N -0.551 5.551
3 C 0.207 3.793
4 C -0.527 4.527
5 H 0.064 0.936
6 C 0.000 4.000
7 N -0.936 5.936
8 Si 0.972 3.028
9 H -0.266 1.266
10 H -0.282 1.282
11 H -0.268 1.268
12 C 0.057 3.943
13 C -0.094 4.094
14 C -0.082 4.082
15 C -0.109 4.109
16 C 0.059 3.941
17 N -0.698 5.698
18 C 0.061 3.939
19 C -0.115 4.115
20 H 0.007 0.993
21 H 0.056 0.944
22 H 0.082 0.918
23 H -0.041 1.041
24 H 0.001 0.999
25 H 0.265 0.735
26 H 0.015 0.985
27 H 0.058 0.942
28 H 0.061 0.939
29 H 0.067 0.933
30 H 0.062 0.938
31 H 0.063 0.937
32 H 0.075 0.925
33 H 0.087 0.913
34 H 0.031 0.969
35 H 0.352 0.648
36 H 0.030 0.970
37 H 0.080 0.920
38 H 0.061 0.939
39 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.236 -17.413 7.870 19.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 N -0.276 5.276
3 C 0.080 3.920
4 C -0.565 4.565
5 H 0.082 0.918
6 C -0.197 4.197
7 N -0.577 5.577
8 Si 0.796 3.204
9 H -0.191 1.191
10 H -0.207 1.207
11 H -0.193 1.193
12 C -0.071 4.071
13 C -0.132 4.132
14 C -0.101 4.101
15 C -0.147 4.147
16 C -0.070 4.070
17 N -0.331 5.331
18 C -0.068 4.068
19 C -0.153 4.153
20 H 0.026 0.974
21 H 0.075 0.925
22 H 0.101 0.899
23 H -0.023 1.023
24 H 0.019 0.981
25 H 0.074 0.926
26 H 0.034 0.966
27 H 0.076 0.924
28 H 0.080 0.920
29 H 0.086 0.914
30 H 0.081 0.919
31 H 0.082 0.918
32 H 0.094 0.906
33 H 0.106 0.894
34 H 0.049 0.951
35 H 0.170 0.830
36 H 0.048 0.952
37 H 0.098 0.902
38 H 0.079 0.921
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -0.981 -17.461 6.797 18.763
hybrid contribution -0.324 1.563 1.108 1.943
sum -1.305 -15.898 7.904 17.803
Atomic orbital electron populations
1.22242 0.87677 1.01404 0.99509 1.62051 1.08251 1.15089 1.42160
1.19387 0.93520 0.84083 0.94998 1.21463 1.35055 0.97608 1.02358
0.91799 1.25961 0.94915 0.98003 1.00870 1.70091 1.39313 1.11927
1.36327 0.85395 0.78889 0.77132 0.78960 1.19100 1.20733 1.19263
1.22169 0.99283 0.94842 0.90823 1.21507 1.00915 0.92256 0.98519
1.21128 0.95414 0.95863 0.97662 1.21611 1.00255 0.93573 0.99236
1.21941 0.87470 1.00789 0.96826 1.60254 1.07443 1.09184 1.56215
1.21884 1.00037 0.88499 0.96422 1.21668 0.95312 0.99089 0.99236
0.97436 0.92539 0.89946 1.02328 0.98086 0.92642 0.96631 0.92391
0.92000 0.91442 0.91950 0.91790 0.90612 0.89425 0.95122 0.82958
0.95179 0.90181 0.92052 0.92429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.59 9.14 127.69 1.17 2.76 16
2 N -0.55 -25.04 4.75 -927.05 -4.41 -29.44 16
3 C 0.21 11.54 4.72 85.56 0.40 11.94 16
4 C -0.53 -30.82 8.46 25.60 0.22 -30.60 16
5 H 0.06 3.64 7.12 -2.91 -0.02 3.62 16
6 C 0.00 0.02 5.46 84.65 0.46 0.48 16
7 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16
8 Si 0.97 44.97 29.54 68.60 2.03 46.99 16
9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
12 C 0.06 2.12 4.72 86.30 0.41 2.53 16
13 C -0.09 -2.72 4.61 30.59 0.14 -2.58 16
14 C -0.08 -1.94 2.25 -10.72 -0.02 -1.97 16
15 C -0.11 -2.15 5.38 30.65 0.16 -1.98 16
16 C 0.06 0.99 6.55 86.32 0.57 1.56 16
17 N -0.70 -12.54 6.85 -513.99 -3.52 -16.06 16
18 C 0.06 1.20 6.55 86.33 0.57 1.77 16
19 C -0.12 -2.80 5.08 30.65 0.16 -2.64 16
20 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
21 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16
22 H 0.08 2.67 6.47 -2.39 -0.02 2.66 16
23 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16
24 H 0.00 0.06 7.93 -2.39 -0.02 0.04 16
25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16
26 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16
27 H 0.06 2.25 6.43 -2.39 -0.02 2.23 16
28 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16
29 H 0.07 1.83 6.55 -2.38 -0.02 1.81 16
30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
34 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16
35 H 0.35 4.78 8.90 -89.69 -0.80 3.98 16
36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16
37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
39 H 0.06 1.53 6.71 -2.39 -0.02 1.51 16
Total: -1.00 -65.29 301.49 -1.19 -66.48
By element:
Atomic # 1 Polarization: 7.88 SS G_CDS: 0.20 Total: 8.08 kcal
Atomic # 6 Polarization: -22.95 SS G_CDS: 4.22 Total: -18.73 kcal
Atomic # 7 Polarization: -95.19 SS G_CDS: -7.64 Total: -102.83 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal
Total: -65.29 -1.19 -66.48 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000702624403.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.315 kcal
(2) G-P(sol) polarization free energy of solvation -65.294 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds