Wall clock time and date at job start Mon Mar 30 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00134 * 2 1 4 4 C 1.50705 * 109.46943 * 293.94882 * 3 2 1 5 5 H 1.08002 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00195 * 179.97438 * 4 3 2 7 7 N 1.31525 * 119.99760 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00301 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47102 * 60.00356 * 8 6 4 10 10 H 1.48503 * 109.46957 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47036 * 300.00458 * 8 6 4 12 12 C 1.46905 * 110.99937 * 123.95067 * 2 1 3 13 13 C 1.52998 * 109.46981 * 66.04910 * 12 2 1 14 14 C 1.52996 * 109.47089 * 180.02562 * 13 12 2 15 15 C 1.53118 * 109.52328 * 174.99886 * 14 13 12 16 16 C 1.53034 * 109.28068 * 177.55504 * 15 14 13 17 17 N 1.46848 * 109.52504 * 300.82023 * 16 15 14 18 18 C 1.46847 * 111.19556 * 61.74015 * 17 16 15 19 19 C 1.53044 * 109.52516 * 298.25761 * 18 17 16 20 20 H 1.08995 * 109.47060 * 296.05040 * 1 2 3 21 21 H 1.09003 * 109.46735 * 56.04526 * 1 2 3 22 22 H 1.08998 * 109.47160 * 176.04494 * 1 2 3 23 23 H 1.08996 * 109.47377 * 53.94803 * 3 2 1 24 24 H 1.08998 * 109.47154 * 173.95552 * 3 2 1 25 25 H 0.96994 * 119.99919 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47126 * 306.04427 * 12 2 1 27 27 H 1.09002 * 109.46614 * 186.04812 * 12 2 1 28 28 H 1.08997 * 109.47326 * 59.99326 * 13 12 2 29 29 H 1.09006 * 109.47071 * 299.99847 * 13 12 2 30 30 H 1.08992 * 109.57558 * 54.83791 * 14 13 12 31 31 H 1.09001 * 109.50624 * 57.61525 * 15 14 13 32 32 H 1.08998 * 109.50047 * 297.49982 * 15 14 13 33 33 H 1.09000 * 109.46341 * 180.80474 * 16 15 14 34 34 H 1.08999 * 109.46274 * 60.83372 * 16 15 14 35 35 H 1.00901 * 111.00066 * 185.83397 * 17 16 15 36 36 H 1.08999 * 109.46628 * 58.27319 * 18 17 16 37 37 H 1.09003 * 109.46158 * 178.24166 * 18 17 16 38 38 H 1.08996 * 109.50067 * 299.23984 * 19 18 17 39 39 H 1.08993 * 109.50192 * 179.12052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5114 -2.0486 6 6 2.0269 3.3494 -1.5287 7 7 2.7120 4.0019 -0.6151 8 14 1.5820 4.1871 -3.1379 9 1 0.1048 4.2236 -3.2851 10 1 2.1143 5.5735 -3.1379 11 1 2.1737 3.4301 -4.2701 12 6 1.9954 -0.7659 1.1377 13 6 1.6315 -2.2426 0.9704 14 6 2.1792 -3.0402 2.1556 15 6 1.7103 -4.4943 2.0542 16 6 2.3108 -5.3005 3.2081 17 7 3.7763 -5.2343 3.1426 18 6 4.2523 -3.8524 3.2854 19 6 3.7098 -3.0030 2.1337 20 1 -0.3633 0.4513 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3444 0.1082 25 1 2.9866 4.9179 -0.7771 26 1 1.5611 -0.3871 2.0628 27 1 3.0797 -0.6610 1.1757 28 1 2.0657 -2.6213 0.0452 29 1 0.5471 -2.3475 0.9324 30 1 1.8175 -2.6050 3.0871 31 1 2.0391 -4.9174 1.1050 32 1 0.6225 -4.5307 2.1122 33 1 1.9904 -6.3394 3.1307 34 1 1.9706 -4.8854 4.1568 35 1 4.1968 -5.8350 3.8358 36 1 3.9030 -3.4441 4.2337 37 1 5.3421 -3.8397 3.2641 38 1 4.0700 -3.4026 1.1858 39 1 4.0505 -1.9741 2.2486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702624403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:50 Heat of formation + Delta-G solvation = -38.167383 kcal Electronic energy + Delta-G solvation = -15909.878504 eV Core-core repulsion = 13464.372898 eV Total energy + Delta-G solvation = -2445.505607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.94540 -38.26736 -35.17370 -34.17850 -31.72133 -30.34245 -28.78649 -27.08010 -24.81651 -23.83350 -22.58624 -21.37050 -20.56076 -18.49407 -17.58405 -16.80613 -16.27844 -16.01705 -15.51017 -15.33991 -15.06287 -14.89050 -14.30873 -13.88395 -13.76241 -13.67515 -13.14996 -12.94364 -12.83758 -12.66228 -12.53342 -12.22769 -12.10603 -12.05607 -11.76544 -11.54158 -11.39134 -11.06066 -10.89681 -10.61907 -9.36856 -9.02404 -8.21061 -6.31899 1.40863 1.44734 1.52645 2.40325 3.11004 3.31269 3.34169 3.81923 3.91994 3.95974 4.25430 4.33396 4.40503 4.50527 4.54983 4.59030 4.63835 4.73477 4.75126 4.77506 4.95221 4.98576 5.02320 5.08829 5.14111 5.18201 5.24855 5.27656 5.33054 5.38831 5.57883 5.64867 6.04497 6.10081 6.33241 6.55520 6.64791 6.84255 7.38029 8.90112 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.056283 B = 0.004659 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.364475 B = 6007.969193 C = 6283.433172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.551 5.551 3 C 0.207 3.793 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.057 3.943 13 C -0.094 4.094 14 C -0.082 4.082 15 C -0.109 4.109 16 C 0.059 3.941 17 N -0.698 5.698 18 C 0.061 3.939 19 C -0.115 4.115 20 H 0.007 0.993 21 H 0.056 0.944 22 H 0.082 0.918 23 H -0.041 1.041 24 H 0.001 0.999 25 H 0.265 0.735 26 H 0.015 0.985 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.352 0.648 36 H 0.030 0.970 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -17.413 7.870 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.276 5.276 3 C 0.080 3.920 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.071 4.071 13 C -0.132 4.132 14 C -0.101 4.101 15 C -0.147 4.147 16 C -0.070 4.070 17 N -0.331 5.331 18 C -0.068 4.068 19 C -0.153 4.153 20 H 0.026 0.974 21 H 0.075 0.925 22 H 0.101 0.899 23 H -0.023 1.023 24 H 0.019 0.981 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.170 0.830 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.981 -17.461 6.797 18.763 hybrid contribution -0.324 1.563 1.108 1.943 sum -1.305 -15.898 7.904 17.803 Atomic orbital electron populations 1.22242 0.87677 1.01404 0.99509 1.62051 1.08251 1.15089 1.42160 1.19387 0.93520 0.84083 0.94998 1.21463 1.35055 0.97608 1.02358 0.91799 1.25961 0.94915 0.98003 1.00870 1.70091 1.39313 1.11927 1.36327 0.85395 0.78889 0.77132 0.78960 1.19100 1.20733 1.19263 1.22169 0.99283 0.94842 0.90823 1.21507 1.00915 0.92256 0.98519 1.21128 0.95414 0.95863 0.97662 1.21611 1.00255 0.93573 0.99236 1.21941 0.87470 1.00789 0.96826 1.60254 1.07443 1.09184 1.56215 1.21884 1.00037 0.88499 0.96422 1.21668 0.95312 0.99089 0.99236 0.97436 0.92539 0.89946 1.02328 0.98086 0.92642 0.96631 0.92391 0.92000 0.91442 0.91950 0.91790 0.90612 0.89425 0.95122 0.82958 0.95179 0.90181 0.92052 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.76 16 2 N -0.55 -25.04 4.75 -927.05 -4.41 -29.44 16 3 C 0.21 11.54 4.72 85.56 0.40 11.94 16 4 C -0.53 -30.82 8.46 25.60 0.22 -30.60 16 5 H 0.06 3.64 7.12 -2.91 -0.02 3.62 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 8 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.06 2.12 4.72 86.30 0.41 2.53 16 13 C -0.09 -2.72 4.61 30.59 0.14 -2.58 16 14 C -0.08 -1.94 2.25 -10.72 -0.02 -1.97 16 15 C -0.11 -2.15 5.38 30.65 0.16 -1.98 16 16 C 0.06 0.99 6.55 86.32 0.57 1.56 16 17 N -0.70 -12.54 6.85 -513.99 -3.52 -16.06 16 18 C 0.06 1.20 6.55 86.33 0.57 1.77 16 19 C -0.12 -2.80 5.08 30.65 0.16 -2.64 16 20 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 21 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16 22 H 0.08 2.67 6.47 -2.39 -0.02 2.66 16 23 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 24 H 0.00 0.06 7.93 -2.39 -0.02 0.04 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 27 H 0.06 2.25 6.43 -2.39 -0.02 2.23 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.83 6.55 -2.38 -0.02 1.81 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.35 4.78 8.90 -89.69 -0.80 3.98 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.53 6.71 -2.39 -0.02 1.51 16 Total: -1.00 -65.29 301.49 -1.19 -66.48 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.20 Total: 8.08 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.22 Total: -18.73 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -7.64 Total: -102.83 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.29 -1.19 -66.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702624403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.315 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds