Wall clock time and date at job start Mon Mar 30 2020 03:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46907 * 2 1 4 4 C 1.46903 * 111.00037 * 163.84934 * 3 2 1 5 5 C 1.50695 * 109.47225 * 293.95829 * 4 3 2 6 6 H 1.08000 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00119 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99772 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47031 * 60.00110 * 9 7 5 11 11 H 1.48507 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47538 * 300.00285 * 9 7 5 13 13 C 1.46901 * 111.00371 * 287.80541 * 3 2 1 14 14 C 1.52999 * 109.47554 * 163.95201 * 13 3 2 15 15 H 1.09002 * 110.28537 * 55.18214 * 14 13 3 16 16 C 1.54251 * 110.32656 * 177.31084 * 14 13 3 17 17 C 1.54375 * 105.06173 * 118.89625 * 16 14 13 18 18 N 1.48555 * 104.59273 * 23.85461 * 17 16 14 19 19 C 1.46907 * 110.99876 * 200.95995 * 18 17 16 20 20 C 1.48558 * 104.22225 * 320.51357 * 18 17 16 21 21 H 1.09002 * 109.47036 * 59.88687 * 1 2 3 22 22 H 1.08997 * 109.46806 * 179.88691 * 1 2 3 23 23 H 1.09001 * 109.47000 * 299.88967 * 1 2 3 24 24 H 1.08996 * 109.47332 * 119.99709 * 2 1 3 25 25 H 1.09002 * 109.47178 * 240.00038 * 2 1 3 26 26 H 1.09003 * 109.47074 * 53.95627 * 4 3 2 27 27 H 1.08996 * 109.47560 * 173.95251 * 4 3 2 28 28 H 0.96999 * 120.00153 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46859 * 283.95612 * 13 3 2 30 30 H 1.08995 * 109.46765 * 43.95043 * 13 3 2 31 31 H 1.09000 * 110.32505 * 237.79534 * 16 14 13 32 32 H 1.09004 * 110.32699 * 359.97438 * 16 14 13 33 33 H 1.08998 * 110.41379 * 142.63367 * 17 16 14 34 34 H 1.09002 * 110.40983 * 264.95692 * 17 16 14 35 35 H 1.08995 * 109.47266 * 60.12589 * 19 18 17 36 36 H 1.09007 * 109.46995 * 180.12655 * 19 18 17 37 37 H 1.08995 * 109.46821 * 300.12518 * 19 18 17 38 38 H 1.08991 * 110.41393 * 280.70340 * 20 18 17 39 39 H 1.09005 * 110.40622 * 158.26072 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4371 1.4423 0.3815 5 6 3.5891 1.0082 1.8166 6 1 2.7196 0.7192 2.3882 7 6 4.8381 0.9802 2.3998 8 7 5.8968 1.3327 1.7038 9 14 5.0263 0.4428 4.1789 10 1 4.5279 -0.9477 4.3313 11 1 6.4594 0.4994 4.5641 12 1 4.2415 1.3488 5.0554 13 6 1.7998 2.0212 -1.3057 14 6 1.9400 3.5381 -1.1641 15 1 2.9066 3.7891 -0.7271 16 6 1.7792 4.2216 -2.5375 17 6 0.5499 5.1430 -2.3857 18 7 0.4583 5.4073 -0.9267 19 6 -0.8958 5.8381 -0.5538 20 6 0.7943 4.1040 -0.2978 21 1 -0.3633 0.5156 -0.8890 22 1 -0.3633 -1.0277 -0.0020 23 1 -0.3633 0.5121 0.8910 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 4.0137 0.7778 -0.2620 27 1 3.8025 2.4631 0.2700 28 1 6.7756 1.3126 2.1139 29 1 2.5379 1.6529 -2.0182 30 1 0.7985 1.7807 -1.6630 31 1 2.6661 4.8096 -2.7740 32 1 1.6008 3.4764 -3.3128 33 1 0.7027 6.0738 -2.9317 34 1 -0.3492 4.6386 -2.7397 35 1 -1.6097 5.0557 -0.8109 36 1 -0.9344 6.0269 0.5191 37 1 -1.1478 6.7513 -1.0928 38 1 -0.0668 3.4364 -0.3232 39 1 1.1312 4.2526 0.7281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703111973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:58 Heat of formation + Delta-G solvation = 0.501325 kcal Electronic energy + Delta-G solvation = -16451.174670 eV Core-core repulsion = 14007.345865 eV Total energy + Delta-G solvation = -2443.828806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.94178 -36.62820 -32.75973 -32.31778 -30.04315 -28.79109 -26.92888 -25.58746 -23.52693 -22.38923 -20.98738 -20.16102 -19.14530 -16.52118 -15.71437 -15.35025 -14.77019 -14.27688 -14.05506 -13.88371 -13.68361 -13.38151 -12.77980 -12.31603 -12.08099 -11.80063 -11.65216 -11.36664 -11.21874 -11.20172 -11.00652 -10.71570 -10.63533 -10.53419 -10.45777 -10.09334 -9.99735 -9.55070 -9.11932 -8.39150 -8.29626 -7.18109 -5.99257 -4.00095 3.35338 3.39490 3.42409 4.27083 4.44918 4.80937 4.95461 5.11010 5.29993 5.36206 5.49792 5.54619 5.54839 5.70008 5.75313 5.91305 5.92303 5.96638 6.00971 6.05385 6.10945 6.16895 6.27275 6.31416 6.40868 6.58158 6.72000 6.81715 6.82479 7.07660 7.23365 7.36872 7.40823 7.84718 8.16072 8.27032 8.60622 9.07541 9.63746 11.11621 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.007021 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.952809 B = 3986.918910 C = 4256.556822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.535 5.535 4 C 0.192 3.808 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.063 3.937 14 C -0.085 4.085 15 H 0.087 0.913 16 C -0.121 4.121 17 C 0.033 3.967 18 N -0.522 5.522 19 C 0.016 3.984 20 C 0.056 3.944 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.015 0.985 26 H -0.012 1.012 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 4.088 -7.137 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.260 5.260 4 C 0.067 3.933 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.066 4.066 14 C -0.105 4.105 15 H 0.105 0.895 16 C -0.160 4.160 17 C -0.095 4.095 18 N -0.246 5.246 19 C -0.133 4.133 20 C -0.072 4.072 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.033 0.967 26 H 0.005 0.995 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.805 4.801 -6.585 13.534 hybrid contribution 0.101 -1.353 0.091 1.359 sum -10.704 3.449 -6.495 12.987 Atomic orbital electron populations 1.21805 0.96867 1.00033 1.01388 1.21942 0.93890 0.90577 1.00802 1.62114 1.22946 1.15657 1.25251 1.19743 0.80986 0.96945 0.95608 1.21132 0.92750 1.44002 0.96627 0.91983 1.24979 0.95887 0.95671 0.98034 1.69947 0.98626 1.48566 1.36694 0.86592 0.76833 0.79100 0.85051 1.20366 1.21401 1.20188 1.22139 0.99215 0.93487 0.91752 1.21876 1.00148 0.94338 0.94096 0.89493 1.22358 0.97860 0.98045 0.97705 1.23076 0.97413 0.98955 0.90026 1.65400 1.24646 1.28885 1.05699 1.22457 0.89323 0.99722 1.01787 1.23007 0.97031 0.87691 0.99430 0.93893 0.93521 0.92342 0.89679 0.96664 0.99466 0.94822 0.92923 0.95806 0.92401 0.91189 0.91642 0.90778 0.94377 0.95723 0.91344 0.91904 0.93852 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.98 37.16 0.37 -1.89 16 2 C 0.06 1.10 5.53 -3.82 -0.02 1.07 16 3 N -0.54 -11.37 4.22 -236.07 -1.00 -12.36 16 4 C 0.19 4.98 4.57 -4.98 -0.02 4.96 16 5 C -0.51 -14.18 8.28 -34.44 -0.29 -14.47 16 6 H 0.06 1.72 7.26 -52.49 -0.38 1.34 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.14 3.92 -3.82 -0.01 1.12 16 14 C -0.09 -1.46 3.09 -89.24 -0.28 -1.73 16 15 H 0.09 1.74 6.52 -51.93 -0.34 1.40 16 16 C -0.12 -1.69 6.65 -25.36 -0.17 -1.86 16 17 C 0.03 0.43 6.49 -2.19 -0.01 0.42 16 18 N -0.52 -7.71 5.66 -238.24 -1.35 -9.06 16 19 C 0.02 0.20 9.53 60.07 0.57 0.77 16 20 C 0.06 0.92 5.86 -2.18 -0.01 0.91 16 21 H 0.04 0.63 6.56 -51.93 -0.34 0.29 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.08 1.83 6.59 -51.93 -0.34 1.49 16 25 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 26 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 27 H 0.03 0.93 6.37 -51.93 -0.33 0.60 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.44 8.05 -51.93 -0.42 0.03 16 30 H 0.06 0.95 6.20 -51.93 -0.32 0.62 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.46 7.98 -51.93 -0.41 0.05 16 35 H 0.02 0.28 7.97 -51.93 -0.41 -0.13 16 36 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.71 7.55 -51.93 -0.39 0.32 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 303.59 15.07 4.57 4.57 Total: -1.00 -29.27 303.59 -9.05 -38.32 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -7.03 Total: -2.89 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.03 Total: -9.22 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -1.61 Total: -47.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.27 -9.05 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703111973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.818 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds