Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46907 * 2 1 4 4 C 1.46903 * 111.00037 * 163.84934 * 3 2 1 5 5 C 1.50695 * 109.47225 * 293.95829 * 4 3 2 6 6 H 1.08000 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00119 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99772 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47031 * 60.00110 * 9 7 5 11 11 H 1.48507 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47538 * 300.00285 * 9 7 5 13 13 C 1.46901 * 111.00371 * 287.80541 * 3 2 1 14 14 C 1.52999 * 109.47554 * 163.95201 * 13 3 2 15 15 H 1.09002 * 110.28537 * 55.18214 * 14 13 3 16 16 C 1.54251 * 110.32656 * 177.31084 * 14 13 3 17 17 C 1.54375 * 105.06173 * 118.89625 * 16 14 13 18 18 N 1.48555 * 104.59273 * 23.85461 * 17 16 14 19 19 C 1.46907 * 110.99876 * 200.95995 * 18 17 16 20 20 C 1.48558 * 104.22225 * 320.51357 * 18 17 16 21 21 H 1.09002 * 109.47036 * 59.88687 * 1 2 3 22 22 H 1.08997 * 109.46806 * 179.88691 * 1 2 3 23 23 H 1.09001 * 109.47000 * 299.88967 * 1 2 3 24 24 H 1.08996 * 109.47332 * 119.99709 * 2 1 3 25 25 H 1.09002 * 109.47178 * 240.00038 * 2 1 3 26 26 H 1.09003 * 109.47074 * 53.95627 * 4 3 2 27 27 H 1.08996 * 109.47560 * 173.95251 * 4 3 2 28 28 H 0.96999 * 120.00153 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46859 * 283.95612 * 13 3 2 30 30 H 1.08995 * 109.46765 * 43.95043 * 13 3 2 31 31 H 1.09000 * 110.32505 * 237.79534 * 16 14 13 32 32 H 1.09004 * 110.32699 * 359.97438 * 16 14 13 33 33 H 1.08998 * 110.41379 * 142.63367 * 17 16 14 34 34 H 1.09002 * 110.40983 * 264.95692 * 17 16 14 35 35 H 1.08995 * 109.47266 * 60.12589 * 19 18 17 36 36 H 1.09007 * 109.46995 * 180.12655 * 19 18 17 37 37 H 1.08995 * 109.46821 * 300.12518 * 19 18 17 38 38 H 1.08991 * 110.41393 * 280.70340 * 20 18 17 39 39 H 1.09005 * 110.40622 * 158.26072 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4371 1.4423 0.3815 5 6 3.5891 1.0082 1.8166 6 1 2.7196 0.7192 2.3882 7 6 4.8381 0.9802 2.3998 8 7 5.8968 1.3327 1.7038 9 14 5.0263 0.4428 4.1789 10 1 4.5279 -0.9477 4.3313 11 1 6.4594 0.4994 4.5641 12 1 4.2415 1.3488 5.0554 13 6 1.7998 2.0212 -1.3057 14 6 1.9400 3.5381 -1.1641 15 1 2.9066 3.7891 -0.7271 16 6 1.7792 4.2216 -2.5375 17 6 0.5499 5.1430 -2.3857 18 7 0.4583 5.4073 -0.9267 19 6 -0.8958 5.8381 -0.5538 20 6 0.7943 4.1040 -0.2978 21 1 -0.3633 0.5156 -0.8890 22 1 -0.3633 -1.0277 -0.0020 23 1 -0.3633 0.5121 0.8910 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 4.0137 0.7778 -0.2620 27 1 3.8025 2.4631 0.2700 28 1 6.7756 1.3126 2.1139 29 1 2.5379 1.6529 -2.0182 30 1 0.7985 1.7807 -1.6630 31 1 2.6661 4.8096 -2.7740 32 1 1.6008 3.4764 -3.3128 33 1 0.7027 6.0738 -2.9317 34 1 -0.3492 4.6386 -2.7397 35 1 -1.6097 5.0557 -0.8109 36 1 -0.9344 6.0269 0.5191 37 1 -1.1478 6.7513 -1.0928 38 1 -0.0668 3.4364 -0.3232 39 1 1.1312 4.2526 0.7281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703111973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = -19.676446 kcal Electronic energy + Delta-G solvation = -16452.049644 eV Core-core repulsion = 14007.345865 eV Total energy + Delta-G solvation = -2444.703779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23473 -38.20977 -34.80686 -33.66734 -31.54094 -30.22723 -28.58674 -26.95753 -25.00617 -24.21425 -22.21086 -21.56398 -20.64906 -18.60334 -17.08048 -16.88567 -16.39587 -15.77974 -15.57518 -15.32088 -15.06104 -14.70815 -14.22262 -13.92524 -13.84984 -13.21747 -12.94232 -12.79844 -12.72443 -12.59734 -12.37009 -12.34591 -12.27798 -11.99366 -11.91411 -11.73303 -11.63315 -11.14527 -11.12333 -10.57775 -9.39927 -8.96344 -8.19151 -6.28607 1.40188 1.43542 1.51296 2.40617 3.12749 3.15906 3.28300 3.75572 3.92148 4.02491 4.22388 4.32339 4.44562 4.53784 4.56327 4.59384 4.63396 4.73110 4.74329 4.79655 4.88733 4.98388 5.01980 5.03530 5.10513 5.15897 5.19350 5.30805 5.36822 5.40935 5.47160 5.67141 5.93088 6.09418 6.16525 6.40511 6.69539 6.88193 7.40708 8.91892 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.007021 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.952809 B = 3986.918910 C = 4256.556822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.053 3.947 3 N -0.539 5.539 4 C 0.210 3.790 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.067 3.933 14 C -0.087 4.087 15 H 0.045 0.955 16 C -0.116 4.116 17 C 0.038 3.962 18 N -0.541 5.541 19 C 0.016 3.984 20 C 0.065 3.935 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.017 0.983 26 H -0.046 1.046 27 H 0.007 0.993 28 H 0.264 0.736 29 H 0.015 0.985 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 4.079 -7.478 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 N -0.263 5.263 4 C 0.084 3.916 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.062 4.062 14 C -0.106 4.106 15 H 0.064 0.936 16 C -0.154 4.154 17 C -0.089 4.089 18 N -0.265 5.265 19 C -0.133 4.133 20 C -0.062 4.062 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.035 0.965 26 H -0.028 1.028 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.938 4.794 -6.938 15.444 hybrid contribution 0.747 -1.330 0.144 1.532 sum -12.191 3.463 -6.795 14.380 Atomic orbital electron populations 1.21692 0.93257 1.01915 1.01889 1.22010 0.96737 0.89160 0.99634 1.62076 1.19550 1.17157 1.27513 1.19346 0.83489 0.94283 0.94486 1.21446 0.92984 1.43951 0.97583 0.91979 1.25905 0.95476 0.95553 1.02758 1.70085 0.99159 1.49597 1.38759 0.85472 0.76985 0.79112 0.79270 1.19163 1.20882 1.19430 1.22212 1.00339 0.93740 0.89868 1.21795 0.98416 0.94115 0.96315 0.93635 1.22340 0.98745 0.98478 0.95874 1.23121 0.97251 0.99656 0.88920 1.65356 1.26670 1.27590 1.06873 1.22515 0.87990 1.00773 1.01983 1.22770 0.96687 0.88969 0.97807 0.92274 0.91006 0.92835 0.92277 0.96490 1.02823 0.97498 0.92771 0.96651 0.89545 0.91309 0.89878 0.89024 0.92676 0.94819 0.91673 0.89924 0.93279 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.98 71.98 0.72 -3.06 16 2 C 0.05 2.04 5.53 86.30 0.48 2.52 16 3 N -0.54 -23.33 4.22 -900.80 -3.80 -27.13 16 4 C 0.21 11.45 4.57 85.55 0.39 11.85 16 5 C -0.52 -30.09 8.28 25.60 0.21 -29.88 16 6 H 0.06 3.51 7.26 -2.91 -0.02 3.49 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 C 0.07 2.39 3.92 86.30 0.34 2.73 16 14 C -0.09 -3.01 3.09 -9.90 -0.03 -3.04 16 15 H 0.05 1.94 6.52 -2.39 -0.02 1.93 16 16 C -0.12 -3.07 6.65 31.48 0.21 -2.86 16 17 C 0.04 0.88 6.49 86.45 0.56 1.44 16 18 N -0.54 -15.12 5.66 -907.65 -5.14 -20.26 16 19 C 0.02 0.35 9.53 127.69 1.22 1.56 16 20 C 0.07 2.15 5.86 86.45 0.51 2.65 16 21 H 0.06 1.53 6.56 -2.39 -0.02 1.51 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 2.58 6.59 -2.39 -0.02 2.56 16 25 H 0.02 0.64 8.05 -2.39 -0.02 0.62 16 26 H -0.05 -2.74 8.12 -2.39 -0.02 -2.76 16 27 H 0.01 0.41 6.37 -2.39 -0.02 0.40 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.02 0.58 8.05 -2.39 -0.02 0.56 16 30 H 0.09 2.62 6.20 -2.39 -0.01 2.60 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.91 7.71 -2.39 -0.02 1.89 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.11 7.98 -2.39 -0.02 1.09 16 35 H 0.03 0.68 7.97 -2.39 -0.02 0.66 16 36 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.53 7.55 -2.39 -0.02 1.51 16 39 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -64.91 303.59 -0.58 -65.49 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.98 Total: 7.62 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.06 Total: -15.58 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -8.65 Total: -104.63 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.91 -0.58 -65.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703111973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.812 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds