Wall clock time and date at job start Mon Mar 30 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46855 * 2 1 4 4 C 1.46900 * 110.99785 * 158.41591 * 3 2 1 5 5 H 1.09000 * 109.46845 * 173.01885 * 4 3 2 6 6 C 1.52993 * 109.47387 * 53.01243 * 4 3 2 7 7 C 1.53001 * 109.47072 * 293.01191 * 4 3 2 8 8 C 1.50703 * 109.47117 * 297.02792 * 7 4 3 9 9 H 1.08000 * 120.00249 * 0.02562 * 8 7 4 10 10 C 1.37882 * 120.00096 * 179.97438 * 8 7 4 11 11 N 1.31520 * 119.99714 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00201 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47164 * 60.00141 * 12 10 8 14 14 H 1.48503 * 109.47103 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47096 * 299.99950 * 12 10 8 16 16 C 1.46902 * 111.00009 * 282.36812 * 3 2 1 17 17 H 1.09003 * 110.76552 * 304.82839 * 16 3 2 18 18 C 1.55141 * 110.70674 * 68.02965 * 16 3 2 19 19 C 1.54906 * 101.68534 * 154.01765 * 18 16 3 20 20 N 1.47886 * 104.77624 * 322.97738 * 19 18 16 21 21 C 1.47440 * 108.58372 * 24.04535 * 20 19 18 22 22 H 1.09006 * 109.46634 * 185.93336 * 1 2 3 23 23 H 1.08994 * 109.47177 * 305.93684 * 1 2 3 24 24 H 1.09003 * 109.47155 * 65.94301 * 1 2 3 25 25 H 1.09004 * 109.46914 * 240.00408 * 2 1 3 26 26 H 1.08996 * 109.46934 * 120.00247 * 2 1 3 27 27 H 1.09000 * 109.47652 * 300.00148 * 6 4 3 28 28 H 1.09010 * 109.46934 * 60.00316 * 6 4 3 29 29 H 1.08997 * 109.47218 * 179.97438 * 6 4 3 30 30 H 1.09006 * 109.46927 * 57.02379 * 7 4 3 31 31 H 1.09000 * 109.47272 * 177.02616 * 7 4 3 32 32 H 0.96992 * 119.99867 * 179.97438 * 11 10 8 33 33 H 1.08999 * 110.98920 * 272.12611 * 18 16 3 34 34 H 1.09000 * 110.98765 * 35.90664 * 18 16 3 35 35 H 1.08999 * 110.37518 * 81.77836 * 19 18 16 36 36 H 1.09007 * 110.36951 * 204.11883 * 19 18 16 37 37 H 1.00901 * 111.01491 * 146.33161 * 20 19 18 38 38 H 1.08999 * 109.88427 * 239.63506 * 21 20 19 39 39 H 1.08997 * 110.02625 * 118.52428 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3975 1.4563 0.5045 5 1 3.7785 2.4697 0.3787 6 6 4.2780 0.4795 -0.2773 7 6 3.4170 1.0848 1.9886 8 6 2.6089 2.0896 2.7686 9 1 2.1290 2.9108 2.2570 10 6 2.4813 1.9601 4.1354 11 7 3.0644 0.9592 4.7583 12 14 1.4791 3.2051 5.1022 13 1 0.0782 3.2029 4.6093 14 1 1.4982 2.8446 6.5426 15 1 2.0646 4.5580 4.9232 16 6 1.9181 1.9793 -1.3396 17 1 2.4387 1.3658 -2.0750 18 6 0.4326 2.1753 -1.7416 19 6 0.5324 3.3472 -2.7498 20 7 1.5882 4.2264 -2.2027 21 6 2.4716 3.4198 -1.3409 22 1 -0.3633 -1.0222 0.1062 23 1 -0.3633 0.6031 0.8320 24 1 -0.3633 0.4189 -0.9384 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8970 -0.5339 -0.1514 28 1 4.2642 0.7442 -1.3347 29 1 5.3004 0.5327 0.0968 30 1 2.9869 0.0919 2.1203 31 1 4.4453 1.0863 2.3501 32 1 2.9750 0.8682 5.7198 33 1 0.0366 1.2803 -2.2213 34 1 -0.1720 2.4533 -0.8784 35 1 0.8192 2.9775 -3.7342 36 1 -0.4161 3.8815 -2.8056 37 1 2.1113 4.6682 -2.9439 38 1 2.4665 3.8198 -0.3270 39 1 3.4871 3.4265 -1.7369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709956884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:12 Heat of formation + Delta-G solvation = 8.010666 kcal Electronic energy + Delta-G solvation = -16963.795147 eV Core-core repulsion = 14520.291971 eV Total energy + Delta-G solvation = -2443.503176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26617 -36.41076 -33.03233 -31.70628 -29.75539 -28.98837 -27.25822 -26.60198 -23.19955 -21.96230 -21.31354 -20.30156 -18.23776 -16.70439 -16.11833 -15.78962 -14.76719 -14.34501 -14.15999 -13.67309 -13.11466 -13.03040 -12.57085 -12.30000 -12.03116 -11.80101 -11.64171 -11.47600 -11.26980 -11.21519 -10.98615 -10.62660 -10.55467 -10.50926 -10.28486 -10.04795 -9.70288 -9.13009 -8.93072 -8.28089 -8.20385 -7.47430 -5.84568 -3.81790 3.45060 3.48094 3.52844 4.30640 4.56653 4.61357 4.87944 5.06915 5.30609 5.45577 5.52103 5.56066 5.69220 5.76515 5.79949 5.80821 5.94567 6.00202 6.06530 6.10029 6.16130 6.24006 6.39413 6.44522 6.55666 6.61483 6.73434 6.83925 6.95635 7.06490 7.47724 7.58332 7.73321 7.95775 8.06825 8.16889 8.62705 9.24214 9.79770 11.27501 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.008868 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.732033 B = 3156.670167 C = 3430.482803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.055 3.945 3 N -0.497 5.497 4 C 0.082 3.918 5 H 0.072 0.928 6 C -0.182 4.182 7 C 0.031 3.969 8 C -0.487 4.487 9 H 0.061 0.939 10 C 0.050 3.950 11 N -0.906 5.906 12 Si 0.889 3.111 13 H -0.278 1.278 14 H -0.292 1.292 15 H -0.279 1.279 16 C 0.063 3.937 17 H 0.035 0.965 18 C -0.121 4.121 19 C 0.044 3.956 20 N -0.682 5.682 21 C 0.052 3.948 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.018 0.982 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.257 0.743 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.332 0.668 38 H 0.095 0.905 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 0.510 -14.149 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.073 4.073 3 N -0.220 5.220 4 C -0.026 4.026 5 H 0.090 0.910 6 C -0.241 4.241 7 C -0.006 4.006 8 C -0.525 4.525 9 H 0.079 0.921 10 C -0.149 4.149 11 N -0.547 5.547 12 Si 0.718 3.282 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.205 1.205 16 C -0.047 4.047 17 H 0.053 0.947 18 C -0.159 4.159 19 C -0.086 4.086 20 N -0.311 5.311 21 C -0.077 4.077 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.339 0.984 -13.112 13.567 hybrid contribution 0.565 -0.444 -0.619 0.948 sum -2.775 0.541 -13.731 14.019 Atomic orbital electron populations 1.22124 0.95990 1.00652 1.02695 1.22024 0.95479 0.89540 1.00280 1.62231 1.22569 1.17818 1.19409 1.21999 0.84900 0.97819 0.97871 0.90956 1.22536 1.01394 1.01070 0.99142 1.19200 0.96962 0.97173 0.87262 1.21125 1.29718 1.10374 0.91307 0.92075 1.24999 0.96205 0.95671 0.98026 1.69956 1.45053 1.30771 1.08887 0.86701 0.80989 0.81877 0.78642 1.20366 1.21773 1.20498 1.22834 0.95534 0.95059 0.91276 0.94700 1.23022 0.97052 0.96655 0.99144 1.22862 0.96098 0.93620 0.95999 1.61889 1.14668 1.31229 1.23278 1.22732 0.93625 0.91742 0.99609 0.93685 0.91404 0.92406 0.96400 0.89767 0.92939 0.94531 0.92585 0.96341 0.96430 0.93344 0.91134 0.89145 0.94695 0.90650 0.85309 0.88671 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.20 37.16 0.34 -2.15 16 2 C 0.05 0.97 4.23 -3.82 -0.02 0.95 16 3 N -0.50 -9.30 3.94 -216.56 -0.85 -10.16 16 4 C 0.08 1.65 2.03 -67.72 -0.14 1.51 16 5 H 0.07 1.48 6.23 -51.93 -0.32 1.16 16 6 C -0.18 -3.14 8.54 37.15 0.32 -2.83 16 7 C 0.03 0.78 4.39 -27.88 -0.12 0.66 16 8 C -0.49 -13.61 8.79 -34.44 -0.30 -13.92 16 9 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 10 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 11 N -0.91 -27.41 13.29 55.43 0.74 -26.68 16 12 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C 0.06 0.99 2.18 -65.89 -0.14 0.85 16 17 H 0.04 0.54 7.00 -51.93 -0.36 0.18 16 18 C -0.12 -1.69 4.55 -24.59 -0.11 -1.80 16 19 C 0.04 0.54 7.58 -2.28 -0.02 0.52 16 20 N -0.68 -9.35 7.39 -110.76 -0.82 -10.17 16 21 C 0.05 0.81 5.90 -2.84 -0.02 0.79 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.06 0.80 4.33 -51.93 -0.23 0.58 16 25 H 0.02 0.29 7.32 -51.93 -0.38 -0.09 16 26 H 0.08 1.70 5.77 -51.93 -0.30 1.40 16 27 H 0.05 0.90 6.74 -51.93 -0.35 0.55 16 28 H 0.04 0.56 6.95 -51.92 -0.36 0.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.50 6.19 -51.93 -0.32 0.18 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 0.88 6.48 -51.93 -0.34 0.54 16 34 H 0.09 1.44 7.61 -51.93 -0.40 1.05 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 37 H 0.33 3.78 8.91 -39.29 -0.35 3.43 16 38 H 0.10 1.77 7.30 -51.93 -0.38 1.39 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -29.67 292.19 -8.44 -38.11 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.59 Total: 1.22 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.31 Total: -14.06 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.94 Total: -47.01 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.67 -8.44 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709956884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.121 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds