Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47016 * 2 1 4 4 C 1.46896 * 111.00118 * 173.35483 * 3 2 1 5 5 H 1.08997 * 109.47257 * 313.15514 * 4 3 2 6 6 C 1.53002 * 109.47266 * 73.15341 * 4 3 2 7 7 C 1.52996 * 109.47131 * 193.15224 * 4 3 2 8 8 C 1.50696 * 109.47424 * 63.69622 * 7 4 3 9 9 H 1.08004 * 119.99477 * 354.97459 * 8 7 4 10 10 C 1.37879 * 120.00699 * 174.97279 * 8 7 4 11 11 N 1.31512 * 120.00438 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99477 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47576 * 270.00104 * 12 10 8 14 14 H 1.48506 * 109.47373 * 30.00367 * 12 10 8 15 15 H 1.48508 * 109.46987 * 150.00128 * 12 10 8 16 16 C 1.46905 * 111.00076 * 297.30920 * 3 2 1 17 17 H 1.08993 * 110.62939 * 204.29263 * 16 3 2 18 18 C 1.55144 * 110.70218 * 327.58630 * 16 3 2 19 19 C 1.54910 * 101.65300 * 154.03855 * 18 16 3 20 20 N 1.47849 * 104.79228 * 322.92868 * 19 18 16 21 21 C 1.47441 * 108.56992 * 24.09541 * 20 19 18 22 22 H 1.09000 * 109.47377 * 307.95785 * 1 2 3 23 23 H 1.08996 * 109.47854 * 67.96399 * 1 2 3 24 24 H 1.09004 * 109.47181 * 187.96317 * 1 2 3 25 25 H 1.08998 * 109.47074 * 240.00363 * 2 1 3 26 26 H 1.09001 * 109.47622 * 119.99975 * 2 1 3 27 27 H 1.09000 * 109.46708 * 306.32420 * 6 4 3 28 28 H 1.08997 * 109.47354 * 66.32147 * 6 4 3 29 29 H 1.09001 * 109.47446 * 186.32650 * 6 4 3 30 30 H 1.09002 * 109.47285 * 303.69234 * 7 4 3 31 31 H 1.09004 * 109.47134 * 183.69301 * 7 4 3 32 32 H 0.97000 * 120.00258 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.99237 * 272.12423 * 18 16 3 34 34 H 1.08994 * 110.99421 * 35.94677 * 18 16 3 35 35 H 1.08995 * 110.37389 * 204.10422 * 19 18 16 36 36 H 1.08998 * 110.47076 * 81.80149 * 19 18 16 37 37 H 1.00903 * 111.00193 * 146.36667 * 20 19 18 38 38 H 1.08994 * 109.89045 * 239.60258 * 21 20 19 39 39 H 1.09001 * 109.88883 * 118.41214 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4793 1.4273 0.1587 5 1 3.7758 0.7646 0.9717 6 6 4.1470 0.9712 -1.1402 7 6 3.9160 2.8576 0.4816 8 6 3.3311 3.2746 1.8063 9 1 2.6452 2.6200 2.3237 10 6 3.6715 4.4915 2.3580 11 7 3.1614 4.8550 3.5144 12 14 4.8583 5.6231 1.4635 13 1 6.2480 5.3209 1.8911 14 1 4.7343 5.4125 -0.0013 15 1 4.5362 7.0357 1.7895 16 6 1.6018 2.0911 -1.2186 17 1 2.2776 2.9188 -1.4336 18 6 1.5264 1.1131 -2.4206 19 6 0.4859 1.8139 -3.3294 20 7 -0.5028 2.3925 -2.3947 21 6 0.1485 2.5932 -1.0873 22 1 -0.3634 0.6321 0.8103 23 1 -0.3635 0.3855 -0.9525 24 1 -0.3634 -1.0178 0.1424 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.7510 -0.0022 -1.4298 28 1 3.9420 1.6959 -1.9281 29 1 5.2236 0.8947 -0.9880 30 1 3.5624 3.5306 -0.2997 31 1 5.0038 2.9023 0.5346 32 1 3.4006 5.7113 3.9023 33 1 2.4915 1.0342 -2.9210 34 1 1.1710 0.1324 -2.1044 35 1 0.0070 1.0887 -3.9872 36 1 0.9603 2.6013 -3.9151 37 1 -0.8728 3.2608 -2.7515 38 1 -0.3738 2.0206 -0.3209 39 1 0.1441 3.6522 -0.8294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709956885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = 24.580245 kcal Electronic energy + Delta-G solvation = -17171.339887 eV Core-core repulsion = 14728.555222 eV Total energy + Delta-G solvation = -2442.784665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81531 -36.15199 -33.20674 -31.81469 -29.57237 -28.88303 -27.91006 -27.06423 -23.09966 -21.78800 -21.04414 -20.27624 -18.59923 -16.86887 -16.55864 -15.72706 -15.18119 -14.30956 -13.87940 -13.36380 -13.31366 -12.82102 -12.57094 -12.46045 -12.20450 -12.04259 -11.95182 -11.65013 -11.32336 -11.24398 -11.09491 -10.87554 -10.57876 -10.35212 -10.12143 -10.00619 -9.62360 -9.52193 -9.01151 -8.42682 -8.20868 -7.48460 -5.90955 -3.84828 3.33752 3.41957 3.43896 4.30831 4.53426 4.57898 5.03313 5.06401 5.27250 5.40071 5.47496 5.55814 5.60192 5.69405 5.74642 5.81278 5.87117 5.89042 5.96076 6.02115 6.09240 6.23932 6.33563 6.42990 6.46273 6.54155 6.56380 6.74435 6.79198 7.03967 7.11135 7.35307 7.52165 7.80906 7.85607 7.98985 8.73194 9.23473 9.72273 11.23032 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.008783 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.126851 B = 3187.065691 C = 3254.292616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.045 3.955 3 N -0.497 5.497 4 C 0.094 3.906 5 H 0.076 0.924 6 C -0.186 4.186 7 C -0.004 4.004 8 C -0.490 4.490 9 H 0.081 0.919 10 C 0.061 3.939 11 N -0.907 5.907 12 Si 0.872 3.128 13 H -0.280 1.280 14 H -0.271 1.271 15 H -0.290 1.290 16 C 0.074 3.926 17 H 0.086 0.914 18 C -0.178 4.178 19 C 0.048 3.952 20 N -0.685 5.685 21 C 0.038 3.962 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.012 0.988 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.334 0.666 38 H 0.100 0.900 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -7.605 -12.424 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.083 4.083 3 N -0.219 5.219 4 C -0.014 4.014 5 H 0.094 0.906 6 C -0.244 4.244 7 C -0.042 4.042 8 C -0.528 4.528 9 H 0.099 0.901 10 C -0.138 4.138 11 N -0.547 5.547 12 Si 0.700 3.300 13 H -0.206 1.206 14 H -0.195 1.195 15 H -0.216 1.216 16 C -0.036 4.036 17 H 0.104 0.896 18 C -0.217 4.217 19 C -0.082 4.082 20 N -0.314 5.314 21 C -0.091 4.091 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.866 -7.832 -11.686 14.590 hybrid contribution 1.693 1.191 -1.284 2.436 sum -2.172 -6.641 -12.971 14.733 Atomic orbital electron populations 1.22225 0.95424 1.00703 1.03582 1.22189 0.95867 0.90353 0.99874 1.62138 1.12181 1.12848 1.34735 1.21715 0.85095 1.00012 0.94562 0.90613 1.22729 1.01166 1.00248 1.00295 1.19660 0.95378 0.91067 0.98050 1.21067 1.26320 1.03045 1.02373 0.90098 1.25018 0.96196 0.97821 0.94778 1.69908 1.45082 1.21950 1.17795 0.86920 0.81947 0.80462 0.80659 1.20590 1.19547 1.21635 1.22821 0.96700 0.96352 0.87762 0.89570 1.23803 0.98899 1.01313 0.97647 1.22716 0.92562 0.97934 0.94992 1.61950 1.34481 1.31434 1.03584 1.23059 0.93615 1.00777 0.91613 0.91517 0.90528 0.93639 0.94933 0.91463 0.93566 0.92836 0.92825 0.96997 0.96849 0.93087 0.91126 0.89141 0.91141 0.94505 0.85125 0.88206 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 7.97 37.16 0.30 -2.03 16 2 C 0.05 0.70 4.87 -3.83 -0.02 0.68 16 3 N -0.50 -9.13 4.12 -216.56 -0.89 -10.02 16 4 C 0.09 1.83 2.24 -67.72 -0.15 1.68 16 5 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 6 C -0.19 -2.94 7.48 37.16 0.28 -2.66 16 7 C 0.00 -0.10 3.48 -27.89 -0.10 -0.19 16 8 C -0.49 -13.82 9.37 -34.44 -0.32 -14.14 16 9 H 0.08 2.50 7.95 -52.48 -0.42 2.08 16 10 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 11 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 12 Si 0.87 21.94 27.37 -169.99 -4.65 17.29 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.55 6.69 56.52 0.38 -6.18 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 C 0.07 1.24 2.15 -65.89 -0.14 1.09 16 17 H 0.09 1.62 5.59 -51.93 -0.29 1.33 16 18 C -0.18 -2.42 4.32 -24.59 -0.11 -2.53 16 19 C 0.05 0.59 7.57 -2.29 -0.02 0.57 16 20 N -0.69 -9.22 6.94 -110.79 -0.77 -9.99 16 21 C 0.04 0.62 6.27 -2.84 -0.02 0.60 16 22 H 0.07 1.06 7.24 -51.93 -0.38 0.68 16 23 H 0.08 1.10 4.48 -51.93 -0.23 0.87 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.03 0.47 4.63 -51.93 -0.24 0.23 16 26 H 0.07 1.06 7.97 -51.93 -0.41 0.65 16 27 H 0.05 0.65 6.28 -51.93 -0.33 0.33 16 28 H 0.05 0.84 5.79 -51.93 -0.30 0.54 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.01 0.29 5.76 -51.93 -0.30 -0.01 16 31 H 0.01 0.31 7.29 -51.93 -0.38 -0.06 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 0.93 6.10 -51.93 -0.32 0.61 16 34 H 0.09 1.23 4.27 -51.93 -0.22 1.01 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.33 3.98 8.91 -39.29 -0.35 3.63 16 38 H 0.10 1.69 4.51 -51.93 -0.23 1.45 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 278.21 15.07 4.19 4.19 Total: -1.00 -29.95 278.21 -7.82 -37.77 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.08 Total: 3.49 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.40 Total: -15.23 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.89 Total: -47.52 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.65 Total: 17.29 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.95 -7.82 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709956885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.352 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds