Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47016 * 2 1 4 4 C 1.46896 * 111.00118 * 173.35483 * 3 2 1 5 5 H 1.08997 * 109.47257 * 313.15514 * 4 3 2 6 6 C 1.53002 * 109.47266 * 73.15341 * 4 3 2 7 7 C 1.52996 * 109.47131 * 193.15224 * 4 3 2 8 8 C 1.50696 * 109.47424 * 63.69622 * 7 4 3 9 9 H 1.08004 * 119.99477 * 354.97459 * 8 7 4 10 10 C 1.37879 * 120.00699 * 174.97279 * 8 7 4 11 11 N 1.31512 * 120.00438 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99477 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47576 * 270.00104 * 12 10 8 14 14 H 1.48506 * 109.47373 * 30.00367 * 12 10 8 15 15 H 1.48508 * 109.46987 * 150.00128 * 12 10 8 16 16 C 1.46905 * 111.00076 * 297.30920 * 3 2 1 17 17 H 1.08993 * 110.62939 * 204.29263 * 16 3 2 18 18 C 1.55144 * 110.70218 * 327.58630 * 16 3 2 19 19 C 1.54910 * 101.65300 * 154.03855 * 18 16 3 20 20 N 1.47849 * 104.79228 * 322.92868 * 19 18 16 21 21 C 1.47441 * 108.56992 * 24.09541 * 20 19 18 22 22 H 1.09000 * 109.47377 * 307.95785 * 1 2 3 23 23 H 1.08996 * 109.47854 * 67.96399 * 1 2 3 24 24 H 1.09004 * 109.47181 * 187.96317 * 1 2 3 25 25 H 1.08998 * 109.47074 * 240.00363 * 2 1 3 26 26 H 1.09001 * 109.47622 * 119.99975 * 2 1 3 27 27 H 1.09000 * 109.46708 * 306.32420 * 6 4 3 28 28 H 1.08997 * 109.47354 * 66.32147 * 6 4 3 29 29 H 1.09001 * 109.47446 * 186.32650 * 6 4 3 30 30 H 1.09002 * 109.47285 * 303.69234 * 7 4 3 31 31 H 1.09004 * 109.47134 * 183.69301 * 7 4 3 32 32 H 0.97000 * 120.00258 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.99237 * 272.12423 * 18 16 3 34 34 H 1.08994 * 110.99421 * 35.94677 * 18 16 3 35 35 H 1.08995 * 110.37389 * 204.10422 * 19 18 16 36 36 H 1.08998 * 110.47076 * 81.80149 * 19 18 16 37 37 H 1.00903 * 111.00193 * 146.36667 * 20 19 18 38 38 H 1.08994 * 109.89045 * 239.60258 * 21 20 19 39 39 H 1.09001 * 109.88883 * 118.41214 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4793 1.4273 0.1587 5 1 3.7758 0.7646 0.9717 6 6 4.1470 0.9712 -1.1402 7 6 3.9160 2.8576 0.4816 8 6 3.3311 3.2746 1.8063 9 1 2.6452 2.6200 2.3237 10 6 3.6715 4.4915 2.3580 11 7 3.1614 4.8550 3.5144 12 14 4.8583 5.6231 1.4635 13 1 6.2480 5.3209 1.8911 14 1 4.7343 5.4125 -0.0013 15 1 4.5362 7.0357 1.7895 16 6 1.6018 2.0911 -1.2186 17 1 2.2776 2.9188 -1.4336 18 6 1.5264 1.1131 -2.4206 19 6 0.4859 1.8139 -3.3294 20 7 -0.5028 2.3925 -2.3947 21 6 0.1485 2.5932 -1.0873 22 1 -0.3634 0.6321 0.8103 23 1 -0.3635 0.3855 -0.9525 24 1 -0.3634 -1.0178 0.1424 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.7510 -0.0022 -1.4298 28 1 3.9420 1.6959 -1.9281 29 1 5.2236 0.8947 -0.9880 30 1 3.5624 3.5306 -0.2997 31 1 5.0038 2.9023 0.5346 32 1 3.4006 5.7113 3.9023 33 1 2.4915 1.0342 -2.9210 34 1 1.1710 0.1324 -2.1044 35 1 0.0070 1.0887 -3.9872 36 1 0.9603 2.6013 -3.9151 37 1 -0.8728 3.2608 -2.7515 38 1 -0.3738 2.0206 -0.3209 39 1 0.1441 3.6522 -0.8294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709956885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = 2.405185 kcal Electronic energy + Delta-G solvation = -17172.301470 eV Core-core repulsion = 14728.555222 eV Total energy + Delta-G solvation = -2443.746248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09797 -37.47515 -35.04122 -33.57830 -30.87472 -30.08738 -29.64635 -28.33200 -24.88046 -23.13178 -22.31905 -21.63359 -20.02217 -18.76300 -18.08149 -16.97425 -16.50656 -16.28477 -15.22548 -14.78774 -14.62584 -14.41211 -14.02161 -13.95864 -13.67253 -13.52912 -13.16055 -13.03231 -12.84540 -12.67069 -12.31314 -12.25682 -12.23585 -11.82891 -11.57443 -11.47270 -11.32035 -11.29627 -10.93380 -10.67337 -9.33125 -8.81299 -8.17711 -6.16215 1.34292 1.35936 1.46585 2.40314 3.01374 3.19488 3.44189 3.85557 3.94570 4.03001 4.22747 4.30588 4.35416 4.45840 4.51989 4.55859 4.57757 4.72904 4.75732 4.90002 4.95217 4.98950 5.07856 5.09594 5.12086 5.19689 5.24684 5.30631 5.37247 5.55497 5.57521 5.75252 5.90336 6.39726 6.47724 6.51701 6.59830 6.93201 7.44287 8.99735 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.008783 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.126851 B = 3187.065691 C = 3254.292616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 N -0.527 5.527 4 C 0.097 3.903 5 H 0.061 0.939 6 C -0.173 4.173 7 C 0.000 4.000 8 C -0.488 4.488 9 H 0.037 0.963 10 C -0.003 4.003 11 N -0.957 5.957 12 Si 0.942 3.058 13 H -0.269 1.269 14 H -0.253 1.253 15 H -0.290 1.290 16 C 0.072 3.928 17 H 0.064 0.936 18 C -0.167 4.167 19 C 0.049 3.951 20 N -0.681 5.681 21 C 0.042 3.958 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.011 0.989 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.343 0.657 38 H 0.089 0.911 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -8.467 -15.279 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 N -0.250 5.250 4 C -0.012 4.012 5 H 0.079 0.921 6 C -0.232 4.232 7 C -0.038 4.038 8 C -0.526 4.526 9 H 0.055 0.945 10 C -0.198 4.198 11 N -0.600 5.600 12 Si 0.767 3.233 13 H -0.194 1.194 14 H -0.176 1.176 15 H -0.216 1.216 16 C -0.038 4.038 17 H 0.082 0.918 18 C -0.205 4.205 19 C -0.080 4.080 20 N -0.311 5.311 21 C -0.088 4.088 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.159 0.841 38 H 0.107 0.893 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.175 -8.713 -14.570 17.271 hybrid contribution 1.388 1.414 -0.333 2.009 sum -1.787 -7.299 -14.903 16.691 Atomic orbital electron populations 1.22134 0.94577 1.01565 1.02762 1.22222 0.96453 0.88908 1.00465 1.62022 1.11665 1.14875 1.36419 1.21504 0.86407 0.97004 0.96269 0.92100 1.22573 1.01344 1.01279 0.97969 1.19596 0.95193 0.93863 0.95140 1.21300 1.25043 1.02245 1.04026 0.94454 1.25938 0.98421 0.99828 0.95627 1.70081 1.47306 1.22718 1.19910 0.85781 0.79567 0.77773 0.80154 1.19413 1.17635 1.21631 1.22749 0.96043 0.96440 0.88530 0.91825 1.23716 0.99994 1.00594 0.96233 1.22803 0.92098 0.98476 0.94642 1.61942 1.34381 1.32070 1.02755 1.22918 0.93754 0.99122 0.92987 0.93886 0.90259 0.91384 0.92691 0.92327 0.91401 0.92382 0.91975 0.97036 0.96354 0.93103 0.89973 0.88673 0.89129 0.93583 0.84057 0.89331 0.95220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 7.97 71.98 0.57 -3.65 16 2 C 0.05 1.39 4.87 86.30 0.42 1.81 16 3 N -0.53 -19.25 4.12 -839.07 -3.45 -22.70 16 4 C 0.10 3.69 2.24 44.92 0.10 3.79 16 5 H 0.06 2.46 7.91 -2.39 -0.02 2.45 16 6 C -0.17 -4.99 7.48 71.98 0.54 -4.45 16 7 C 0.00 -0.02 3.48 29.85 0.10 0.08 16 8 C -0.49 -28.34 9.37 25.60 0.24 -28.10 16 9 H 0.04 2.43 7.95 -2.91 -0.02 2.41 16 10 C 0.00 -0.20 5.47 84.66 0.46 0.26 16 11 N -0.96 -61.74 13.96 21.45 0.30 -61.44 16 12 Si 0.94 45.46 27.37 68.60 1.88 47.34 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.25 -11.34 6.69 99.48 0.67 -10.67 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 C 0.07 2.35 2.15 46.10 0.10 2.45 16 17 H 0.06 2.34 5.59 -2.39 -0.01 2.32 16 18 C -0.17 -4.02 4.32 31.98 0.14 -3.88 16 19 C 0.05 1.05 7.57 86.77 0.66 1.71 16 20 N -0.68 -17.06 6.94 -504.44 -3.50 -20.56 16 21 C 0.04 1.34 6.27 86.65 0.54 1.88 16 22 H 0.04 1.38 7.24 -2.39 -0.02 1.36 16 23 H 0.08 2.14 4.48 -2.39 -0.01 2.13 16 24 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.06 1.40 4.63 -2.39 -0.01 1.39 16 26 H 0.06 1.82 7.97 -2.39 -0.02 1.81 16 27 H 0.07 1.67 6.28 -2.39 -0.01 1.65 16 28 H 0.06 1.63 5.79 -2.39 -0.01 1.62 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.01 0.54 5.76 -2.39 -0.01 0.53 16 31 H 0.02 0.83 7.29 -2.39 -0.02 0.82 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.08 1.82 6.10 -2.39 -0.01 1.81 16 34 H 0.10 2.23 4.27 -2.39 -0.01 2.22 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.34 7.59 8.91 -89.69 -0.80 6.79 16 38 H 0.09 3.04 4.51 -2.39 -0.01 3.03 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -66.27 278.21 -0.70 -66.97 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.20 Total: 18.49 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.88 Total: -28.10 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -6.66 Total: -104.71 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -66.27 -0.70 -66.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709956885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.378 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds