Wall clock time and date at job start Mon Mar 30 2020 03:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00218 * 2 1 4 4 C 1.46905 * 111.00164 * 123.95354 * 2 1 3 5 5 C 1.53000 * 109.46813 * 66.04399 * 4 2 1 6 6 C 1.53009 * 109.46774 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.45726 * 54.98334 * 6 5 4 8 8 N 1.46839 * 109.46556 * 295.00319 * 6 5 4 9 9 C 1.46846 * 111.19921 * 178.25531 * 8 6 5 10 10 C 1.53039 * 109.52521 * 61.73889 * 9 8 6 11 11 C 1.53118 * 109.27610 * 300.82426 * 10 9 8 12 12 C 1.53040 * 109.45150 * 174.95112 * 6 5 4 13 13 H 1.09003 * 109.50343 * 299.17477 * 12 6 5 14 14 C 1.50699 * 109.50267 * 59.25263 * 12 6 5 15 15 H 1.07997 * 120.00060 * 5.46018 * 14 12 6 16 16 C 1.37881 * 119.99990 * 185.46410 * 14 12 6 17 17 N 1.31513 * 120.00114 * 9.24275 * 16 14 12 18 18 Si 1.86804 * 119.99755 * 189.24094 * 16 14 12 19 19 H 1.48505 * 109.46782 * 94.98962 * 18 16 14 20 20 H 1.48495 * 109.47063 * 214.98778 * 18 16 14 21 21 H 1.48492 * 109.47405 * 334.99365 * 18 16 14 22 22 H 1.09005 * 109.47072 * 296.04309 * 1 2 3 23 23 H 1.08998 * 109.47488 * 56.04492 * 1 2 3 24 24 H 1.09003 * 109.47476 * 176.04714 * 1 2 3 25 25 H 1.09004 * 109.46815 * 183.95263 * 3 2 1 26 26 H 1.09000 * 109.46789 * 303.95456 * 3 2 1 27 27 H 1.08997 * 109.47072 * 63.95707 * 3 2 1 28 28 H 1.09001 * 109.46942 * 306.04778 * 4 2 1 29 29 H 1.08999 * 109.47260 * 186.04410 * 4 2 1 30 30 H 1.09001 * 109.47056 * 60.00450 * 5 4 2 31 31 H 1.08999 * 109.47216 * 300.00038 * 5 4 2 32 32 H 1.00909 * 110.99740 * 302.34657 * 8 6 5 33 33 H 1.08997 * 109.46298 * 181.75661 * 9 8 6 34 34 H 1.09002 * 109.45856 * 301.72175 * 9 8 6 35 35 H 1.08998 * 109.50312 * 60.75911 * 10 9 8 36 36 H 1.08991 * 109.50299 * 180.88452 * 10 9 8 37 37 H 1.09001 * 109.52626 * 297.74894 * 11 10 9 38 38 H 1.09002 * 109.57403 * 177.59018 * 11 10 9 39 39 H 0.96991 * 119.99923 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1803 -3.0405 2.1549 7 1 1.8162 -2.6054 3.0857 8 7 3.6479 -2.9975 2.1358 9 6 4.2153 -3.7186 3.2824 10 6 3.8055 -5.1915 3.2139 11 6 2.2777 -5.2924 3.2288 12 6 1.7097 -4.4932 2.0528 13 1 0.6206 -4.5258 2.0820 14 6 2.1964 -5.0897 0.7573 15 1 2.8555 -4.5235 0.1159 16 6 1.8001 -6.3585 0.3907 17 7 0.8606 -6.9766 1.0724 18 14 2.5978 -7.1993 -1.0743 19 1 3.7083 -8.0657 -0.6035 20 1 1.5878 -8.0286 -1.7795 21 1 3.1317 -6.1722 -2.0044 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5610 -0.3872 2.0628 29 1 3.0797 -0.6611 1.1756 30 1 2.0657 -2.6213 0.0451 31 1 0.5471 -2.3475 0.9323 32 1 4.0090 -3.3600 1.2661 33 1 5.3023 -3.6425 3.2575 34 1 3.8417 -3.2803 4.2079 35 1 4.1904 -5.6340 2.2951 36 1 4.2137 -5.7231 4.0734 37 1 1.8948 -4.8852 4.1646 38 1 1.9798 -6.3369 3.1371 39 1 0.5821 -7.8692 0.8147 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710005188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:50 Heat of formation + Delta-G solvation = -12.855268 kcal Electronic energy + Delta-G solvation = -16745.715626 eV Core-core repulsion = 14301.307635 eV Total energy + Delta-G solvation = -2444.407991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.45109 -36.91945 -32.76540 -32.16325 -29.98765 -28.24831 -27.32817 -24.95070 -24.02243 -22.11083 -21.02538 -19.79518 -19.07984 -15.91305 -15.28270 -15.10794 -14.81455 -14.44179 -14.00407 -13.95323 -13.37201 -13.06374 -12.55327 -12.23988 -11.99172 -11.74717 -11.59493 -11.42693 -11.30555 -10.92480 -10.81896 -10.70697 -10.39303 -10.19426 -10.03447 -9.87547 -9.54261 -9.31800 -8.70003 -8.30666 -8.04565 -7.25184 -6.01141 -4.01337 3.30032 3.38317 3.41314 4.29975 4.44650 5.23153 5.33087 5.35714 5.44668 5.58922 5.64420 5.81104 5.87198 5.91379 5.98301 6.05076 6.13266 6.20174 6.26724 6.33349 6.49340 6.56621 6.62753 6.70420 6.88464 6.98543 7.16728 7.28962 7.34418 7.40541 7.44649 7.63935 7.75680 7.91238 8.11464 8.36940 8.46288 9.00661 9.61124 11.08165 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.008866 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.172156 B = 3157.286755 C = 3780.115653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.549 5.549 3 C 0.027 3.973 4 C 0.061 3.939 5 C -0.093 4.093 6 C 0.096 3.904 7 H 0.048 0.952 8 N -0.681 5.681 9 C 0.064 3.936 10 C -0.143 4.143 11 C -0.103 4.103 12 C 0.018 3.982 13 H 0.032 0.968 14 C -0.504 4.504 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.881 3.119 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.273 1.273 22 H 0.019 0.981 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.342 0.658 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.017 0.983 38 H 0.070 0.930 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 10.193 1.182 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.122 4.122 4 C -0.066 4.066 5 C -0.131 4.131 6 C -0.014 4.014 7 H 0.067 0.933 8 N -0.311 5.311 9 C -0.066 4.066 10 C -0.182 4.182 11 C -0.141 4.141 12 C -0.002 4.002 13 H 0.051 0.949 14 C -0.542 4.542 15 H 0.075 0.925 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.709 3.291 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.198 1.198 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.089 0.911 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.326 10.438 1.059 10.746 hybrid contribution -0.116 -1.259 -0.239 1.287 sum 2.210 9.179 0.820 9.477 Atomic orbital electron populations 1.22413 0.87988 1.02712 0.99472 1.62015 1.07655 1.12956 1.44650 1.22336 1.00689 0.89509 0.99640 1.22223 1.00480 0.94624 0.89274 1.21473 1.00140 0.91643 0.99825 1.21514 0.87235 0.96711 0.95960 0.93348 1.60941 1.07243 1.56924 1.05959 1.21835 0.97758 0.92577 0.94413 1.22091 0.98564 0.96883 1.00674 1.21471 0.93290 1.02727 0.96595 1.19296 0.96927 0.89927 0.94026 0.94946 1.21011 1.28940 0.99790 1.04433 0.92518 1.24918 0.94625 0.97747 0.96346 1.69961 1.28085 1.13846 1.40770 0.86755 0.79313 0.79839 0.83216 1.20942 1.21466 1.19756 0.96240 0.92170 0.90614 0.91560 0.92051 0.96303 0.96125 0.90036 0.90467 0.92506 0.83909 0.92658 0.92758 0.91365 0.94627 0.96468 0.91126 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.32 60.06 0.56 0.87 16 2 N -0.55 -8.35 5.02 -251.25 -1.26 -9.61 16 3 C 0.03 0.33 9.57 60.07 0.57 0.91 16 4 C 0.06 1.00 4.85 -3.82 -0.02 0.98 16 5 C -0.09 -1.75 4.40 -26.73 -0.12 -1.87 16 6 C 0.10 1.93 2.16 -67.72 -0.15 1.78 16 7 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 8 N -0.68 -12.79 5.91 -106.76 -0.63 -13.42 16 9 C 0.06 1.15 6.55 -3.83 -0.03 1.13 16 10 C -0.14 -2.89 5.82 -26.65 -0.16 -3.05 16 11 C -0.10 -2.36 5.37 -26.61 -0.14 -2.50 16 12 C 0.02 0.43 2.00 -91.69 -0.18 0.24 16 13 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 14 C -0.50 -12.89 6.07 -34.44 -0.21 -13.10 16 15 H 0.06 1.44 5.86 -52.49 -0.31 1.14 16 16 C 0.07 1.75 5.19 -17.82 -0.09 1.66 16 17 N -0.89 -25.18 12.17 55.43 0.67 -24.50 16 18 Si 0.88 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.06 0.73 8.12 -51.93 -0.42 0.30 16 24 H 0.08 1.12 6.47 -51.93 -0.34 0.79 16 25 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 26 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.02 0.34 8.12 -51.93 -0.42 -0.09 16 29 H 0.08 1.36 7.67 -51.93 -0.40 0.96 16 30 H 0.08 1.62 6.86 -51.93 -0.36 1.26 16 31 H 0.06 1.10 6.55 -51.93 -0.34 0.76 16 32 H 0.34 6.78 7.22 -39.29 -0.28 6.50 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.51 7.35 -51.93 -0.38 1.12 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 1.83 6.87 -51.93 -0.36 1.48 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -26.91 296.01 -8.70 -35.61 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.96 Total: 4.41 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 0.04 Total: -12.94 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -1.22 Total: -47.53 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.91 -8.70 -35.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710005188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.753 kcal (2) G-P(sol) polarization free energy of solvation -26.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds