Wall clock time and date at job start Mon Mar 30 2020 03:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00218 * 2 1 4 4 C 1.46905 * 111.00164 * 123.95354 * 2 1 3 5 5 C 1.53000 * 109.46813 * 66.04399 * 4 2 1 6 6 C 1.53009 * 109.46774 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.45726 * 54.98334 * 6 5 4 8 8 N 1.46839 * 109.46556 * 295.00319 * 6 5 4 9 9 C 1.46846 * 111.19921 * 178.25531 * 8 6 5 10 10 C 1.53039 * 109.52521 * 61.73889 * 9 8 6 11 11 C 1.53118 * 109.27610 * 300.82426 * 10 9 8 12 12 C 1.53040 * 109.45150 * 174.95112 * 6 5 4 13 13 H 1.09003 * 109.50343 * 299.17477 * 12 6 5 14 14 C 1.50699 * 109.50267 * 59.25263 * 12 6 5 15 15 H 1.07997 * 120.00060 * 5.46018 * 14 12 6 16 16 C 1.37881 * 119.99990 * 185.46410 * 14 12 6 17 17 N 1.31513 * 120.00114 * 9.24275 * 16 14 12 18 18 Si 1.86804 * 119.99755 * 189.24094 * 16 14 12 19 19 H 1.48505 * 109.46782 * 94.98962 * 18 16 14 20 20 H 1.48495 * 109.47063 * 214.98778 * 18 16 14 21 21 H 1.48492 * 109.47405 * 334.99365 * 18 16 14 22 22 H 1.09005 * 109.47072 * 296.04309 * 1 2 3 23 23 H 1.08998 * 109.47488 * 56.04492 * 1 2 3 24 24 H 1.09003 * 109.47476 * 176.04714 * 1 2 3 25 25 H 1.09004 * 109.46815 * 183.95263 * 3 2 1 26 26 H 1.09000 * 109.46789 * 303.95456 * 3 2 1 27 27 H 1.08997 * 109.47072 * 63.95707 * 3 2 1 28 28 H 1.09001 * 109.46942 * 306.04778 * 4 2 1 29 29 H 1.08999 * 109.47260 * 186.04410 * 4 2 1 30 30 H 1.09001 * 109.47056 * 60.00450 * 5 4 2 31 31 H 1.08999 * 109.47216 * 300.00038 * 5 4 2 32 32 H 1.00909 * 110.99740 * 302.34657 * 8 6 5 33 33 H 1.08997 * 109.46298 * 181.75661 * 9 8 6 34 34 H 1.09002 * 109.45856 * 301.72175 * 9 8 6 35 35 H 1.08998 * 109.50312 * 60.75911 * 10 9 8 36 36 H 1.08991 * 109.50299 * 180.88452 * 10 9 8 37 37 H 1.09001 * 109.52626 * 297.74894 * 11 10 9 38 38 H 1.09002 * 109.57403 * 177.59018 * 11 10 9 39 39 H 0.96991 * 119.99923 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1803 -3.0405 2.1549 7 1 1.8162 -2.6054 3.0857 8 7 3.6479 -2.9975 2.1358 9 6 4.2153 -3.7186 3.2824 10 6 3.8055 -5.1915 3.2139 11 6 2.2777 -5.2924 3.2288 12 6 1.7097 -4.4932 2.0528 13 1 0.6206 -4.5258 2.0820 14 6 2.1964 -5.0897 0.7573 15 1 2.8555 -4.5235 0.1159 16 6 1.8001 -6.3585 0.3907 17 7 0.8606 -6.9766 1.0724 18 14 2.5978 -7.1993 -1.0743 19 1 3.7083 -8.0657 -0.6035 20 1 1.5878 -8.0286 -1.7795 21 1 3.1317 -6.1722 -2.0044 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5610 -0.3872 2.0628 29 1 3.0797 -0.6611 1.1756 30 1 2.0657 -2.6213 0.0451 31 1 0.5471 -2.3475 0.9323 32 1 4.0090 -3.3600 1.2661 33 1 5.3023 -3.6425 3.2575 34 1 3.8417 -3.2803 4.2079 35 1 4.1904 -5.6340 2.2951 36 1 4.2137 -5.7231 4.0734 37 1 1.8948 -4.8852 4.1646 38 1 1.9798 -6.3369 3.1371 39 1 0.5821 -7.8692 0.8147 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710005188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:49 Heat of formation + Delta-G solvation = -30.702463 kcal Electronic energy + Delta-G solvation = -16746.489539 eV Core-core repulsion = 14301.307635 eV Total energy + Delta-G solvation = -2445.181903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08557 -38.17586 -34.73542 -33.68949 -31.79556 -29.75706 -28.39209 -26.87903 -25.45502 -23.70432 -22.44375 -21.31642 -20.87766 -17.86885 -16.78609 -16.54138 -16.39737 -15.84811 -15.46631 -15.33359 -15.10132 -14.70375 -14.15129 -13.72504 -13.53418 -13.17168 -12.93524 -12.87221 -12.73953 -12.55492 -12.46176 -12.41303 -12.03396 -11.96006 -11.71481 -11.46499 -11.28940 -11.06767 -10.61262 -10.36052 -9.19056 -8.89722 -8.08911 -6.13237 1.38668 1.42023 1.50209 2.44526 3.15239 3.23572 3.67989 4.18228 4.23449 4.32489 4.36568 4.46117 4.55087 4.57420 4.69457 4.71505 4.76270 4.86634 4.91239 4.93979 4.98495 5.05677 5.07319 5.15014 5.26880 5.38635 5.49137 5.54269 5.60574 5.66602 5.84197 5.97196 6.20646 6.26650 6.34088 6.50182 6.76903 6.96855 7.51596 9.00326 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.008866 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.172156 B = 3157.286755 C = 3780.115653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.567 5.567 3 C 0.027 3.973 4 C 0.075 3.925 5 C -0.082 4.082 6 C 0.106 3.894 7 H 0.054 0.946 8 N -0.669 5.669 9 C 0.068 3.932 10 C -0.136 4.136 11 C -0.101 4.101 12 C 0.016 3.984 13 H -0.009 1.009 14 C -0.496 4.496 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.923 5.923 18 Si 0.938 3.062 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.265 1.265 22 H 0.026 0.974 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.338 0.662 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 11.894 1.128 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.121 4.121 4 C -0.052 4.052 5 C -0.121 4.121 6 C -0.005 4.005 7 H 0.072 0.928 8 N -0.298 5.298 9 C -0.062 4.062 10 C -0.175 4.175 11 C -0.139 4.139 12 C -0.004 4.004 13 H 0.009 0.991 14 C -0.535 4.535 15 H 0.077 0.923 16 C -0.184 4.184 17 N -0.563 5.563 18 Si 0.765 3.235 19 H -0.207 1.207 20 H -0.219 1.219 21 H -0.189 1.189 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.831 12.159 1.001 12.788 hybrid contribution -0.618 -1.766 -0.202 1.882 sum 3.213 10.393 0.799 10.908 Atomic orbital electron populations 1.22409 0.87386 1.01988 1.00710 1.61977 1.08412 1.14712 1.44034 1.22391 1.00982 0.87933 1.00751 1.21978 1.00465 0.92761 0.90007 1.21308 0.99009 0.93632 0.98119 1.21344 0.88216 0.94206 0.96693 0.92780 1.60965 1.05935 1.56741 1.06170 1.21924 0.99465 0.90459 0.94377 1.22021 0.95999 0.99029 1.00483 1.21376 0.95695 1.00244 0.96606 1.19291 0.94429 0.92785 0.93886 0.99121 1.21250 1.27866 0.99509 1.04829 0.92332 1.25614 0.95222 0.98695 0.98851 1.70096 1.29674 1.14021 1.42546 0.85841 0.78267 0.78881 0.80518 1.20658 1.21880 1.18907 0.95505 0.90286 0.92468 0.91120 0.90462 0.95533 0.95777 0.89957 0.92694 0.93831 0.84420 0.89783 0.91525 0.93475 0.92650 0.95457 0.94846 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.32 127.69 1.19 1.80 16 2 N -0.57 -16.21 5.02 -948.83 -4.76 -20.97 16 3 C 0.03 0.60 9.57 127.69 1.22 1.82 16 4 C 0.08 2.35 4.85 86.30 0.42 2.76 16 5 C -0.08 -3.09 4.40 30.60 0.13 -2.96 16 6 C 0.11 4.19 2.16 44.94 0.10 4.29 16 7 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 8 N -0.67 -23.80 5.91 -491.68 -2.91 -26.70 16 9 C 0.07 2.22 6.55 86.33 0.57 2.79 16 10 C -0.14 -5.31 5.82 30.65 0.18 -5.13 16 11 C -0.10 -4.68 5.37 30.67 0.16 -4.51 16 12 C 0.02 0.78 2.00 -11.49 -0.02 0.75 16 13 H -0.01 -0.53 8.09 -2.39 -0.02 -0.55 16 14 C -0.50 -25.74 6.07 25.60 0.16 -25.58 16 15 H 0.06 2.98 5.86 -2.91 -0.02 2.96 16 16 C 0.01 0.77 5.19 84.66 0.44 1.21 16 17 N -0.92 -54.03 12.17 21.45 0.26 -53.77 16 18 Si 0.94 43.62 29.55 68.60 2.03 45.64 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 22 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 24 H 0.06 1.69 6.47 -2.39 -0.02 1.67 16 25 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.08 1.45 8.12 -2.39 -0.02 1.44 16 27 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.08 2.55 7.67 -2.39 -0.02 2.54 16 30 H 0.05 2.30 6.86 -2.39 -0.02 2.28 16 31 H 0.04 1.73 6.55 -2.39 -0.02 1.71 16 32 H 0.34 12.79 7.22 -89.69 -0.65 12.14 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 2.03 7.35 -2.39 -0.02 2.01 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.03 1.77 6.87 -2.39 -0.02 1.76 16 39 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -58.14 296.01 -0.48 -58.62 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.35 Total: 19.92 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.54 Total: -22.75 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -7.41 Total: -101.44 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.14 -0.48 -58.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710005188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -58.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds