Wall clock time and date at job start Mon Mar 30 2020 03:35:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46895 * 111.00510 * 2 1
4 4 H 1.09005 * 109.47027 * 34.99426 * 3 2 1
5 5 C 1.53005 * 109.46781 * 275.00227 * 3 2 1
6 6 C 1.52999 * 109.47034 * 179.97438 * 5 3 2
7 7 C 1.52999 * 109.47632 * 59.99582 * 6 5 3
8 8 C 1.53001 * 109.46910 * 300.00279 * 7 6 5
9 9 H 1.08994 * 109.47235 * 299.99656 * 8 7 6
10 10 N 1.46898 * 109.46948 * 179.97438 * 8 7 6
11 11 C 1.46901 * 111.00443 * 306.04832 * 10 8 7
12 12 C 1.46906 * 110.99820 * 70.00145 * 10 8 7
13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 8
14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10
15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10
16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12
17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12
18 18 H 1.48502 * 109.47212 * 89.99910 * 17 15 13
19 19 H 1.48494 * 109.47103 * 209.99646 * 17 15 13
20 20 H 1.48502 * 109.46911 * 329.99720 * 17 15 13
21 21 C 1.52999 * 109.47465 * 155.00130 * 3 2 1
22 22 H 1.08998 * 109.47129 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.46645 * 300.00495 * 1 2 3
24 24 H 1.08992 * 109.47106 * 59.99888 * 1 2 3
25 25 H 1.00900 * 110.99608 * 236.03919 * 2 1 3
26 26 H 1.09002 * 109.46971 * 299.99844 * 5 3 2
27 27 H 1.08997 * 109.47446 * 59.99740 * 5 3 2
28 28 H 1.08998 * 109.47407 * 180.02562 * 6 5 3
29 29 H 1.09002 * 109.47116 * 299.99758 * 6 5 3
30 30 H 1.08991 * 109.47416 * 179.97438 * 7 6 5
31 31 H 1.09002 * 109.46727 * 59.99937 * 7 6 5
32 32 H 1.09002 * 109.47401 * 183.95136 * 11 10 8
33 33 H 1.09001 * 109.46874 * 63.95149 * 11 10 8
34 34 H 1.09004 * 109.46970 * 303.95282 * 11 10 8
35 35 H 1.08997 * 109.46995 * 289.99871 * 12 10 8
36 36 H 1.09001 * 109.46848 * 49.99877 * 12 10 8
37 37 H 0.96999 * 119.99606 * 179.97438 * 16 15 13
38 38 H 1.08994 * 109.47238 * 59.99883 * 21 3 2
39 39 H 1.08999 * 109.47126 * 299.99714 * 21 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 1 1.3398 2.0123 0.5894
5 6 2.0609 1.8925 -1.4371
6 6 2.6087 3.3210 -1.4371
7 6 4.0119 3.3293 -0.8273
8 6 3.9465 2.8082 0.6098
9 1 3.2905 3.4488 1.1991
10 7 5.2938 2.8155 1.1951
11 6 6.2401 2.0780 0.3475
12 6 5.7580 4.1893 1.4304
13 6 7.0234 4.1588 2.2483
14 1 7.4412 3.2134 2.5616
15 6 7.6477 5.3377 2.5966
16 7 7.1391 6.4889 2.2147
17 14 9.2166 5.2999 3.6098
18 1 10.3904 5.2358 2.7025
19 1 9.2993 6.5282 4.4401
20 1 9.2072 4.1056 4.4923
21 6 3.3988 1.3789 0.6096
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 1.8305 -0.5262 -0.7813
26 1 2.7166 1.2515 -2.0265
27 1 1.0612 1.8871 -1.8714
28 1 2.6549 3.6925 -2.4608
29 1 1.9527 3.9617 -0.8478
30 1 4.4023 4.3469 -0.8277
31 1 4.6679 2.6886 -1.4166
32 1 7.2129 2.0391 0.8377
33 1 6.3374 2.5834 -0.6133
34 1 5.8722 1.0642 0.1891
35 1 5.9548 4.6750 0.4747
36 1 4.9904 4.7449 1.9692
37 1 7.5781 7.3183 2.4600
38 1 4.0545 0.7380 0.0202
39 1 3.3523 1.0077 1.6333
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000712698861.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:21
Heat of formation + Delta-G solvation = -31.037515 kcal
Electronic energy + Delta-G solvation = -16431.839384 eV
Core-core repulsion = 13986.642952 eV
Total energy + Delta-G solvation = -2445.196432 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.56869 -37.75402 -35.25287 -34.27137 -31.26247 -29.98025 -28.86788 -26.74992
-25.69317 -23.78557 -22.97907 -21.60225 -20.31344 -18.52976 -17.15760 -16.70846
-16.10484 -15.85820 -15.55856 -15.22862 -15.14442 -14.69338 -14.42886 -14.07021
-13.68365 -13.33936 -13.14220 -13.02318 -12.72574 -12.63459 -12.54931 -12.35016
-12.12403 -12.06234 -11.83952 -11.56111 -11.37357 -11.24804 -11.05759 -10.60063
-9.28126 -8.87435 -8.19688 -6.29988 1.40606 1.42317 1.54186 2.40711
3.11549 3.14759 3.50528 3.74424 3.99163 4.08507 4.17619 4.25395
4.46804 4.49509 4.57496 4.58078 4.64240 4.69317 4.75168 4.77714
4.95747 5.05979 5.08099 5.09141 5.12337 5.16045 5.21703 5.28895
5.32528 5.45874 5.53412 5.67469 6.07355 6.12299 6.38896 6.55335
6.71200 6.87300 7.39882 8.91221
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.050272 B = 0.005687 C = 0.005458
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 556.832864 B = 4922.625703 C = 5128.652789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.698 5.698
3 C 0.095 3.905
4 H 0.068 0.932
5 C -0.134 4.134
6 C -0.105 4.105
7 C -0.145 4.145
8 C 0.084 3.916
9 H 0.053 0.947
10 N -0.546 5.546
11 C 0.040 3.960
12 C 0.211 3.789
13 C -0.525 4.525
14 H 0.062 0.938
15 C 0.001 3.999
16 N -0.936 5.936
17 Si 0.970 3.030
18 H -0.272 1.272
19 H -0.281 1.281
20 H -0.265 1.265
21 C -0.081 4.081
22 H 0.078 0.922
23 H 0.057 0.943
24 H 0.029 0.971
25 H 0.348 0.652
26 H 0.070 0.930
27 H 0.074 0.926
28 H 0.071 0.929
29 H 0.058 0.942
30 H 0.032 0.968
31 H 0.066 0.934
32 H 0.052 0.948
33 H 0.014 0.986
34 H 0.079 0.921
35 H -0.034 1.034
36 H -0.005 1.005
37 H 0.264 0.736
38 H 0.066 0.934
39 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.150 -11.191 -8.173 17.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 N -0.328 5.328
3 C -0.016 4.016
4 H 0.087 0.913
5 C -0.173 4.173
6 C -0.144 4.144
7 C -0.184 4.184
8 C -0.025 4.025
9 H 0.072 0.928
10 N -0.268 5.268
11 C -0.108 4.108
12 C 0.085 3.915
13 C -0.563 4.563
14 H 0.080 0.920
15 C -0.197 4.197
16 N -0.576 5.576
17 Si 0.794 3.206
18 H -0.197 1.197
19 H -0.207 1.207
20 H -0.189 1.189
21 C -0.120 4.120
22 H 0.097 0.903
23 H 0.076 0.924
24 H 0.048 0.952
25 H 0.166 0.834
26 H 0.089 0.911
27 H 0.093 0.907
28 H 0.089 0.911
29 H 0.076 0.924
30 H 0.051 0.949
31 H 0.085 0.915
32 H 0.071 0.929
33 H 0.033 0.967
34 H 0.097 0.903
35 H -0.016 1.016
36 H 0.014 0.986
37 H 0.073 0.927
38 H 0.084 0.916
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -11.110 -11.345 -6.994 17.351
hybrid contribution 0.746 1.412 -1.068 1.922
sum -10.364 -9.933 -8.062 16.464
Atomic orbital electron populations
1.22240 0.86926 1.02511 1.00448 1.60426 1.08621 1.13276 1.50507
1.21463 0.95356 0.89449 0.95288 0.91348 1.22158 1.01472 0.96383
0.97326 1.21366 0.94837 0.97373 1.00815 1.22136 0.98602 0.99999
0.97695 1.21725 0.90509 0.97423 0.92840 0.92826 1.62197 1.02102
1.16265 1.46266 1.22228 0.96566 0.97738 0.94295 1.19323 0.94313
0.84575 0.93305 1.21520 1.08918 0.92820 1.33074 0.92005 1.25922
1.01423 0.94889 0.97445 1.70094 1.41740 0.98069 1.47736 0.85377
0.78881 0.77771 0.78563 1.19717 1.20697 1.18947 1.21375 0.95396
0.94128 1.01098 0.90291 0.92401 0.95219 0.83354 0.91125 0.90729
0.91056 0.92371 0.94885 0.91519 0.92937 0.96728 0.90288 1.01613
0.98643 0.92729 0.91567 0.92425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 10.50 127.69 1.34 1.79 16
2 N -0.70 -14.02 6.60 -514.62 -3.40 -17.42 16
3 C 0.10 2.22 2.47 44.92 0.11 2.33 16
4 H 0.07 1.72 7.80 -2.38 -0.02 1.70 16
5 C -0.13 -2.74 5.17 30.60 0.16 -2.58 16
6 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16
7 C -0.15 -4.81 4.45 30.59 0.14 -4.67 16
8 C 0.08 3.09 2.19 44.93 0.10 3.19 16
9 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16
10 N -0.55 -24.47 4.70 -901.50 -4.24 -28.71 16
11 C 0.04 1.58 8.48 127.69 1.08 2.66 16
12 C 0.21 11.67 4.29 85.55 0.37 12.03 16
13 C -0.53 -30.71 8.52 25.60 0.22 -30.50 16
14 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16
15 C 0.00 0.05 5.46 84.65 0.46 0.52 16
16 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16
17 Si 0.97 45.20 29.54 68.60 2.03 47.23 16
18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16
19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
21 C -0.08 -2.40 4.74 30.61 0.15 -2.26 16
22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
23 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16
24 H 0.03 0.42 7.44 -2.39 -0.02 0.40 16
25 H 0.35 5.91 8.56 -89.69 -0.77 5.15 16
26 H 0.07 1.35 8.13 -2.39 -0.02 1.34 16
27 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16
28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
30 H 0.03 1.30 6.91 -2.39 -0.02 1.28 16
31 H 0.07 2.12 6.41 -2.39 -0.02 2.11 16
32 H 0.05 2.24 6.86 -2.39 -0.02 2.22 16
33 H 0.01 0.56 6.46 -2.39 -0.02 0.55 16
34 H 0.08 2.59 6.30 -2.38 -0.02 2.57 16
35 H -0.03 -2.00 7.06 -2.39 -0.02 -2.02 16
36 H 0.00 -0.28 7.93 -2.39 -0.02 -0.29 16
37 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16
38 H 0.07 1.86 6.47 -2.39 -0.02 1.85 16
39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
Total: -1.00 -64.99 295.38 -0.78 -65.77
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: 0.24 Total: 10.35 kcal
Atomic # 6 Polarization: -24.23 SS G_CDS: 4.30 Total: -19.93 kcal
Atomic # 7 Polarization: -96.07 SS G_CDS: -7.35 Total: -103.42 kcal
Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal
Total: -64.99 -0.78 -65.77 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000712698861.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.735 kcal
(2) G-P(sol) polarization free energy of solvation -64.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.255 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds