Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00510 * 2 1 4 4 H 1.09005 * 109.47027 * 34.99426 * 3 2 1 5 5 C 1.53005 * 109.46781 * 275.00227 * 3 2 1 6 6 C 1.52999 * 109.47034 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47632 * 59.99582 * 6 5 3 8 8 C 1.53001 * 109.46910 * 300.00279 * 7 6 5 9 9 H 1.08994 * 109.47235 * 299.99656 * 8 7 6 10 10 N 1.46898 * 109.46948 * 179.97438 * 8 7 6 11 11 C 1.46901 * 111.00443 * 306.04832 * 10 8 7 12 12 C 1.46906 * 110.99820 * 70.00145 * 10 8 7 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 8 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47212 * 89.99910 * 17 15 13 19 19 H 1.48494 * 109.47103 * 209.99646 * 17 15 13 20 20 H 1.48502 * 109.46911 * 329.99720 * 17 15 13 21 21 C 1.52999 * 109.47465 * 155.00130 * 3 2 1 22 22 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46645 * 300.00495 * 1 2 3 24 24 H 1.08992 * 109.47106 * 59.99888 * 1 2 3 25 25 H 1.00900 * 110.99608 * 236.03919 * 2 1 3 26 26 H 1.09002 * 109.46971 * 299.99844 * 5 3 2 27 27 H 1.08997 * 109.47446 * 59.99740 * 5 3 2 28 28 H 1.08998 * 109.47407 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47116 * 299.99758 * 6 5 3 30 30 H 1.08991 * 109.47416 * 179.97438 * 7 6 5 31 31 H 1.09002 * 109.46727 * 59.99937 * 7 6 5 32 32 H 1.09002 * 109.47401 * 183.95136 * 11 10 8 33 33 H 1.09001 * 109.46874 * 63.95149 * 11 10 8 34 34 H 1.09004 * 109.46970 * 303.95282 * 11 10 8 35 35 H 1.08997 * 109.46995 * 289.99871 * 12 10 8 36 36 H 1.09001 * 109.46848 * 49.99877 * 12 10 8 37 37 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.47238 * 59.99883 * 21 3 2 39 39 H 1.08999 * 109.47126 * 299.99714 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3398 2.0123 0.5894 5 6 2.0609 1.8925 -1.4371 6 6 2.6087 3.3210 -1.4371 7 6 4.0119 3.3293 -0.8273 8 6 3.9465 2.8082 0.6098 9 1 3.2905 3.4488 1.1991 10 7 5.2938 2.8155 1.1951 11 6 6.2401 2.0780 0.3475 12 6 5.7580 4.1893 1.4304 13 6 7.0234 4.1588 2.2483 14 1 7.4412 3.2134 2.5616 15 6 7.6477 5.3377 2.5966 16 7 7.1391 6.4889 2.2147 17 14 9.2166 5.2999 3.6098 18 1 10.3904 5.2358 2.7025 19 1 9.2993 6.5282 4.4401 20 1 9.2072 4.1056 4.4923 21 6 3.3988 1.3789 0.6096 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8305 -0.5262 -0.7813 26 1 2.7166 1.2515 -2.0265 27 1 1.0612 1.8871 -1.8714 28 1 2.6549 3.6925 -2.4608 29 1 1.9527 3.9617 -0.8478 30 1 4.4023 4.3469 -0.8277 31 1 4.6679 2.6886 -1.4166 32 1 7.2129 2.0391 0.8377 33 1 6.3374 2.5834 -0.6133 34 1 5.8722 1.0642 0.1891 35 1 5.9548 4.6750 0.4747 36 1 4.9904 4.7449 1.9692 37 1 7.5781 7.3183 2.4600 38 1 4.0545 0.7380 0.0202 39 1 3.3523 1.0077 1.6333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712698861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = -31.037515 kcal Electronic energy + Delta-G solvation = -16431.839384 eV Core-core repulsion = 13986.642952 eV Total energy + Delta-G solvation = -2445.196432 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56869 -37.75402 -35.25287 -34.27137 -31.26247 -29.98025 -28.86788 -26.74992 -25.69317 -23.78557 -22.97907 -21.60225 -20.31344 -18.52976 -17.15760 -16.70846 -16.10484 -15.85820 -15.55856 -15.22862 -15.14442 -14.69338 -14.42886 -14.07021 -13.68365 -13.33936 -13.14220 -13.02318 -12.72574 -12.63459 -12.54931 -12.35016 -12.12403 -12.06234 -11.83952 -11.56111 -11.37357 -11.24804 -11.05759 -10.60063 -9.28126 -8.87435 -8.19688 -6.29988 1.40606 1.42317 1.54186 2.40711 3.11549 3.14759 3.50528 3.74424 3.99163 4.08507 4.17619 4.25395 4.46804 4.49509 4.57496 4.58078 4.64240 4.69317 4.75168 4.77714 4.95747 5.05979 5.08099 5.09141 5.12337 5.16045 5.21703 5.28895 5.32528 5.45874 5.53412 5.67469 6.07355 6.12299 6.38896 6.55335 6.71200 6.87300 7.39882 8.91221 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050272 B = 0.005687 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.832864 B = 4922.625703 C = 5128.652789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.698 5.698 3 C 0.095 3.905 4 H 0.068 0.932 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.145 4.145 8 C 0.084 3.916 9 H 0.053 0.947 10 N -0.546 5.546 11 C 0.040 3.960 12 C 0.211 3.789 13 C -0.525 4.525 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.265 1.265 21 C -0.081 4.081 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.348 0.652 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.014 0.986 34 H 0.079 0.921 35 H -0.034 1.034 36 H -0.005 1.005 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -11.191 -8.173 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.328 5.328 3 C -0.016 4.016 4 H 0.087 0.913 5 C -0.173 4.173 6 C -0.144 4.144 7 C -0.184 4.184 8 C -0.025 4.025 9 H 0.072 0.928 10 N -0.268 5.268 11 C -0.108 4.108 12 C 0.085 3.915 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.189 1.189 21 C -0.120 4.120 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.166 0.834 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.097 0.903 35 H -0.016 1.016 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.110 -11.345 -6.994 17.351 hybrid contribution 0.746 1.412 -1.068 1.922 sum -10.364 -9.933 -8.062 16.464 Atomic orbital electron populations 1.22240 0.86926 1.02511 1.00448 1.60426 1.08621 1.13276 1.50507 1.21463 0.95356 0.89449 0.95288 0.91348 1.22158 1.01472 0.96383 0.97326 1.21366 0.94837 0.97373 1.00815 1.22136 0.98602 0.99999 0.97695 1.21725 0.90509 0.97423 0.92840 0.92826 1.62197 1.02102 1.16265 1.46266 1.22228 0.96566 0.97738 0.94295 1.19323 0.94313 0.84575 0.93305 1.21520 1.08918 0.92820 1.33074 0.92005 1.25922 1.01423 0.94889 0.97445 1.70094 1.41740 0.98069 1.47736 0.85377 0.78881 0.77771 0.78563 1.19717 1.20697 1.18947 1.21375 0.95396 0.94128 1.01098 0.90291 0.92401 0.95219 0.83354 0.91125 0.90729 0.91056 0.92371 0.94885 0.91519 0.92937 0.96728 0.90288 1.01613 0.98643 0.92729 0.91567 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.50 127.69 1.34 1.79 16 2 N -0.70 -14.02 6.60 -514.62 -3.40 -17.42 16 3 C 0.10 2.22 2.47 44.92 0.11 2.33 16 4 H 0.07 1.72 7.80 -2.38 -0.02 1.70 16 5 C -0.13 -2.74 5.17 30.60 0.16 -2.58 16 6 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 7 C -0.15 -4.81 4.45 30.59 0.14 -4.67 16 8 C 0.08 3.09 2.19 44.93 0.10 3.19 16 9 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 10 N -0.55 -24.47 4.70 -901.50 -4.24 -28.71 16 11 C 0.04 1.58 8.48 127.69 1.08 2.66 16 12 C 0.21 11.67 4.29 85.55 0.37 12.03 16 13 C -0.53 -30.71 8.52 25.60 0.22 -30.50 16 14 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 15 C 0.00 0.05 5.46 84.65 0.46 0.52 16 16 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 17 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.08 -2.40 4.74 30.61 0.15 -2.26 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 24 H 0.03 0.42 7.44 -2.39 -0.02 0.40 16 25 H 0.35 5.91 8.56 -89.69 -0.77 5.15 16 26 H 0.07 1.35 8.13 -2.39 -0.02 1.34 16 27 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.03 1.30 6.91 -2.39 -0.02 1.28 16 31 H 0.07 2.12 6.41 -2.39 -0.02 2.11 16 32 H 0.05 2.24 6.86 -2.39 -0.02 2.22 16 33 H 0.01 0.56 6.46 -2.39 -0.02 0.55 16 34 H 0.08 2.59 6.30 -2.38 -0.02 2.57 16 35 H -0.03 -2.00 7.06 -2.39 -0.02 -2.02 16 36 H 0.00 -0.28 7.93 -2.39 -0.02 -0.29 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 38 H 0.07 1.86 6.47 -2.39 -0.02 1.85 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -64.99 295.38 -0.78 -65.77 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.24 Total: 10.35 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.30 Total: -19.93 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -7.35 Total: -103.42 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -64.99 -0.78 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712698861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.735 kcal (2) G-P(sol) polarization free energy of solvation -64.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds