Wall clock time and date at job start Mon Mar 30 2020 03:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47512 * 2 1 4 4 C 1.34889 * 117.00257 * 180.02562 * 3 2 1 5 5 O 1.21573 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.47010 * 119.99956 * 179.72402 * 4 3 2 7 7 N 1.31030 * 125.13206 * 0.29572 * 6 4 3 8 8 C 1.29453 * 117.68901 * 179.97438 * 7 6 4 9 9 C 1.39299 * 114.86646 * 0.02562 * 8 7 6 10 10 C 1.39630 * 126.13622 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00146 * 359.97438 * 10 9 8 12 12 C 1.40546 * 119.99657 * 179.97438 * 10 9 8 13 13 N 1.30544 * 120.00338 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99715 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47295 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46810 * 120.00025 * 14 12 10 17 17 H 1.48494 * 109.47131 * 239.99865 * 14 12 10 18 18 S 1.76089 * 125.13211 * 179.97438 * 6 4 3 19 19 H 1.08997 * 109.47042 * 60.00234 * 1 2 3 20 20 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47213 * 299.99849 * 1 2 3 22 22 H 1.09003 * 109.46990 * 239.99475 * 2 1 3 23 23 H 1.09003 * 109.47267 * 120.00152 * 2 1 3 24 24 H 1.08000 * 122.56809 * 179.97438 * 8 7 6 25 25 H 0.96992 * 119.99828 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3513 1.5456 -0.0005 5 8 4.0919 0.5815 -0.0005 6 6 3.9133 2.9040 -0.0067 7 7 3.2113 4.0104 -0.0064 8 6 3.8569 5.1325 -0.0118 9 6 5.2444 5.0099 -0.0179 10 6 6.1639 6.0607 -0.0239 11 1 5.8156 7.0830 -0.0245 12 6 7.5426 5.7879 -0.0291 13 7 7.9636 4.5523 -0.0279 14 14 8.7727 7.1938 -0.0379 15 1 8.0451 8.4883 -0.0374 16 1 9.6307 7.1082 1.1712 17 1 9.6203 7.1023 -1.2537 18 16 5.6313 3.2900 -0.0075 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.3579 6.0903 -0.0125 25 1 8.9151 4.3641 -0.0311 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716328096.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:01 Heat of formation + Delta-G solvation = -98.236351 kcal Electronic energy + Delta-G solvation = -12927.248455 eV Core-core repulsion = 10416.672988 eV Total energy + Delta-G solvation = -2510.575467 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00125 -39.22406 -37.32649 -36.43648 -32.65044 -31.77791 -28.51888 -25.61204 -24.10878 -22.67877 -20.95169 -20.15317 -18.27080 -17.88086 -17.40690 -17.05729 -16.20047 -15.23561 -15.14224 -14.58061 -14.26100 -14.10574 -13.84180 -13.58025 -13.17624 -13.13893 -12.82457 -12.46003 -11.97805 -11.66385 -11.61670 -11.46000 -11.38094 -10.11239 -10.04006 -9.39162 -9.15469 -6.91442 0.03907 1.10462 1.27529 1.36224 1.63207 1.70558 1.71755 2.06859 2.37098 2.46264 2.98003 3.92159 4.00119 4.14054 4.32736 4.60222 4.64992 4.85326 4.90929 4.96227 5.14047 5.43845 5.55357 5.74967 6.04543 6.09777 6.94193 7.56716 7.66686 Molecular weight = 227.04amu Principal moments of inertia in cm(-1) A = 0.076832 B = 0.006482 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.344836 B = 4318.450818 C = 4662.334538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 O -0.360 6.360 4 C 0.555 3.445 5 O -0.576 6.576 6 C -0.305 4.305 7 N -0.388 5.388 8 C -0.137 4.137 9 C -0.037 4.037 10 C -0.297 4.297 11 H 0.143 0.857 12 C 0.000 4.000 13 N -0.753 5.753 14 Si 1.029 2.971 15 H -0.235 1.235 16 H -0.259 1.259 17 H -0.259 1.259 18 S 0.107 5.893 19 H 0.065 0.935 20 H 0.110 0.890 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.172 0.828 25 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 2.404 -0.019 2.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 O -0.277 6.277 4 C 0.406 3.594 5 O -0.472 6.472 6 C -0.553 4.553 7 N -0.102 5.102 8 C -0.307 4.307 9 C -0.162 4.162 10 C -0.336 4.336 11 H 0.161 0.839 12 C -0.226 4.226 13 N -0.377 5.377 14 Si 0.844 3.156 15 H -0.157 1.157 16 H -0.183 1.183 17 H -0.183 1.183 18 S 0.358 5.642 19 H 0.084 0.916 20 H 0.128 0.872 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.189 0.811 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.220 0.860 -0.008 0.888 hybrid contribution 0.001 0.655 -0.007 0.655 sum 0.220 1.515 -0.015 1.531 Atomic orbital electron populations 1.21788 0.89789 1.04521 1.03419 1.23302 0.97505 0.79755 1.02003 1.86678 1.23233 1.33064 1.84734 1.19738 0.80200 0.87529 0.71914 1.90679 1.61087 1.42421 1.52967 1.24815 0.96188 0.92191 1.42081 1.65286 1.41154 0.98323 1.05445 1.22057 0.89520 0.96002 1.23127 1.24109 0.97262 0.96579 0.98204 1.20455 0.90378 0.95869 1.26893 0.83901 1.27877 1.02056 1.01025 0.91596 1.68899 1.21492 1.23103 1.24209 0.84411 0.75554 0.76039 0.79600 1.15733 1.18310 1.18303 1.85029 1.01654 1.00650 1.76878 0.91619 0.87170 0.91620 0.91855 0.91848 0.81098 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 10.29 71.98 0.74 -2.69 15 2 C 0.05 1.70 6.20 71.98 0.45 2.15 15 3 O -0.36 -17.03 10.21 -58.03 -0.59 -17.62 15 4 C 0.56 30.11 7.95 70.12 0.56 30.67 15 5 O -0.58 -32.15 16.71 19.59 0.33 -31.83 15 6 C -0.31 -17.33 7.45 87.11 0.65 -16.68 15 7 N -0.39 -21.47 10.45 -187.18 -1.96 -23.43 15 8 C -0.14 -6.92 11.36 85.30 0.97 -5.95 15 9 C -0.04 -1.83 6.25 22.86 0.14 -1.69 15 10 C -0.30 -12.63 9.33 23.17 0.22 -12.42 15 11 H 0.14 5.11 7.85 -2.91 -0.02 5.09 15 12 C 0.00 0.00 5.51 85.45 0.47 0.47 15 13 N -0.75 -32.24 10.74 21.93 0.24 -32.00 15 14 Si 1.03 27.27 29.57 68.60 2.03 29.30 15 15 H -0.24 -5.69 7.11 99.48 0.71 -4.98 15 16 H -0.26 -6.72 7.11 99.48 0.71 -6.01 15 17 H -0.26 -6.72 7.11 99.48 0.71 -6.01 15 18 S 0.11 5.82 20.27 -56.49 -1.14 4.68 15 19 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.11 1.91 8.14 -2.39 -0.02 1.90 15 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 22 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.06 2.16 8.14 -2.39 -0.02 2.15 15 24 H 0.17 7.42 8.06 -2.91 -0.02 7.40 15 25 H 0.32 11.91 8.29 -92.71 -0.77 11.14 15 Total: -1.00 -65.34 248.51 4.30 -61.04 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.21 Total: 16.01 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.19 Total: -6.15 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -1.72 Total: -55.43 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.26 Total: -49.45 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: 2.03 Total: 29.30 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.14 Total: 4.68 kcal Total: -65.34 4.30 -61.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716328096.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.200 kcal (2) G-P(sol) polarization free energy of solvation -65.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds