Wall clock time and date at job start Mon Mar 30 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00255 * 2 1 4 4 C 1.50697 * 109.47051 * 66.04657 * 3 2 1 5 5 H 1.07996 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99815 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00386 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99772 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47378 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47138 * 119.99889 * 8 6 4 11 11 H 1.48504 * 109.46992 * 239.99563 * 8 6 4 12 12 C 1.46895 * 110.99963 * 236.04511 * 2 1 3 13 13 H 1.09001 * 109.47414 * 63.95606 * 12 2 1 14 14 C 1.53000 * 109.47320 * 183.95239 * 12 2 1 15 15 C 1.53002 * 109.47320 * 180.02562 * 14 12 2 16 16 C 1.53008 * 109.46995 * 299.99845 * 15 14 12 17 17 C 1.53005 * 109.46774 * 60.00238 * 16 15 14 18 18 H 1.08990 * 109.47398 * 60.00139 * 17 16 15 19 19 C 1.53000 * 109.46867 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.46769 * 294.99558 * 19 17 16 21 21 C 1.53002 * 109.47165 * 299.99658 * 17 16 15 22 22 H 1.09007 * 109.47449 * 183.95723 * 1 2 3 23 23 H 1.09002 * 109.47439 * 303.95314 * 1 2 3 24 24 H 1.08996 * 109.47543 * 63.95347 * 1 2 3 25 25 H 1.08995 * 109.47024 * 186.04776 * 3 2 1 26 26 H 1.09003 * 109.46861 * 306.04866 * 3 2 1 27 27 H 0.97002 * 120.00399 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47224 * 299.99820 * 14 12 2 29 29 H 1.09000 * 109.47090 * 60.00421 * 14 12 2 30 30 H 1.09000 * 109.47312 * 59.99788 * 15 14 12 31 31 H 1.08998 * 109.47141 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.47044 * 300.00107 * 16 15 14 33 33 H 1.09001 * 109.47171 * 180.02562 * 16 15 14 34 34 H 1.09002 * 109.47398 * 54.99853 * 19 17 16 35 35 H 1.09001 * 109.47194 * 175.00033 * 19 17 16 36 36 H 1.00908 * 110.99847 * 180.02562 * 20 19 17 37 37 H 1.00899 * 111.00283 * 303.95539 * 20 19 17 38 38 H 1.08994 * 109.47359 * 180.02562 * 21 17 16 39 39 H 1.09000 * 109.47312 * 300.00535 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0269 3.3494 1.5284 7 7 2.7121 4.0019 0.6149 8 14 1.5831 4.1867 3.1383 9 1 0.8158 3.2442 3.9915 10 1 2.8250 4.5943 3.8430 11 1 0.7552 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1375 13 1 1.7043 -0.2799 -2.0688 14 6 3.5216 -0.8264 -1.0492 15 6 4.0700 -1.6236 -2.2344 16 6 3.5006 -3.0435 -2.2011 17 6 1.9743 -2.9830 -2.2895 18 1 1.6833 -2.4966 -3.2204 19 6 1.4049 -4.4027 -2.2555 20 7 1.8352 -5.1316 -3.4562 21 6 1.4260 -2.1857 -1.1043 22 1 -0.3634 -1.0253 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4512 -0.9232 25 1 3.0797 1.3443 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 2.9867 4.9180 0.7769 28 1 3.9273 0.1850 -1.0734 29 1 3.8127 -1.3125 -0.1181 30 1 3.7789 -1.1372 -3.1654 31 1 5.1572 -1.6670 -2.1712 32 1 3.7917 -3.5299 -1.2701 33 1 3.8916 -3.6116 -3.0451 34 1 1.7688 -4.9190 -1.3671 35 1 0.3162 -4.3570 -2.2289 36 1 1.4714 -6.0728 -3.4576 37 1 1.5656 -4.6389 -4.2944 38 1 0.3387 -2.1431 -1.1670 39 1 1.7171 -2.6722 -0.1733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724024113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:32 Heat of formation + Delta-G solvation = -19.323723 kcal Electronic energy + Delta-G solvation = -16369.674092 eV Core-core repulsion = 13924.985608 eV Total energy + Delta-G solvation = -2444.688484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02266 -36.05662 -33.90751 -32.42820 -30.47042 -29.04219 -27.13364 -24.83444 -24.27969 -21.87581 -21.25051 -19.82106 -19.11230 -16.43631 -16.05229 -14.86099 -14.77108 -14.58420 -14.37194 -14.18462 -13.71758 -13.22560 -12.84705 -12.62033 -12.13198 -11.90853 -11.74117 -11.39765 -11.10222 -10.93420 -10.78103 -10.63906 -10.55734 -10.48772 -10.20226 -10.00118 -9.77672 -9.32851 -9.09076 -8.78190 -8.37888 -7.14464 -5.99025 -3.99573 3.32795 3.40084 3.45151 4.39304 4.48249 4.80165 4.95695 5.01066 5.32962 5.36439 5.43967 5.51765 5.65980 5.78293 5.84378 5.86780 5.91464 5.99561 6.06932 6.19347 6.26220 6.35451 6.47415 6.56045 6.57788 6.63478 6.75648 6.83757 6.92079 6.99206 7.27767 7.40496 7.41780 7.86122 8.17250 8.28760 8.63312 9.08646 9.64241 11.11952 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052197 B = 0.005725 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.303978 B = 4889.678485 C = 5224.884469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.538 5.538 3 C 0.188 3.812 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.089 3.911 13 H 0.024 0.976 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.083 4.083 18 H 0.063 0.937 19 C 0.066 3.934 20 N -0.850 5.850 21 C -0.106 4.106 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.037 0.963 26 H -0.013 1.013 27 H 0.260 0.740 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.337 0.663 37 H 0.338 0.662 38 H 0.057 0.943 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -14.438 -6.848 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.262 5.262 3 C 0.063 3.937 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.020 4.020 13 H 0.042 0.958 14 C -0.151 4.151 15 C -0.157 4.157 16 C -0.139 4.139 17 C -0.102 4.102 18 H 0.081 0.919 19 C -0.065 4.065 20 N -0.379 5.379 21 C -0.145 4.145 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.026 0.974 25 H 0.055 0.945 26 H 0.005 0.995 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.785 -14.370 -6.152 15.651 hybrid contribution -1.553 1.016 -0.149 1.862 sum -2.338 -13.354 -6.300 14.950 Atomic orbital electron populations 1.22239 0.89317 0.99440 1.00268 1.62144 1.06502 1.17646 1.39929 1.19808 0.95909 0.81623 0.96328 1.21230 1.34470 0.96851 1.01765 0.91896 1.24986 0.95405 0.97374 0.96915 1.69971 1.38615 1.11355 1.34010 0.86470 0.78138 0.79305 0.83682 1.19689 1.21025 1.21182 1.21473 0.94846 0.93070 0.92596 0.95761 1.21625 0.94756 1.00735 0.97941 1.21569 0.99642 0.95747 0.98751 1.21456 0.94161 0.96457 1.01855 1.21152 0.96373 0.93882 0.98842 0.91878 1.21861 0.96504 0.94755 0.93359 1.58724 1.68137 1.06227 1.04792 1.21654 0.99470 0.95475 0.97869 0.93466 0.90908 0.97428 0.94475 0.99504 0.93058 0.91171 0.91515 0.92641 0.92301 0.92421 0.91528 0.91041 0.95828 0.85114 0.84982 0.92421 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 8.92 60.06 0.54 1.26 16 2 N -0.54 -11.90 4.62 -236.33 -1.09 -13.00 16 3 C 0.19 5.00 4.54 -4.98 -0.02 4.98 16 4 C -0.50 -14.42 8.46 -34.44 -0.29 -14.71 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.09 1.65 1.94 -67.71 -0.13 1.52 16 13 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 14 C -0.11 -2.00 5.00 -26.73 -0.13 -2.13 16 15 C -0.12 -1.71 5.92 -26.73 -0.16 -1.86 16 16 C -0.10 -1.31 5.09 -26.72 -0.14 -1.45 16 17 C -0.08 -1.04 2.33 -90.62 -0.21 -1.26 16 18 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 19 C 0.07 0.70 6.17 -3.82 -0.02 0.68 16 20 N -0.85 -7.82 9.08 -10.37 -0.09 -7.91 16 21 C -0.11 -1.59 4.12 -26.73 -0.11 -1.70 16 22 H 0.05 0.81 6.24 -51.93 -0.32 0.48 16 23 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 24 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.04 1.04 5.83 -51.93 -0.30 0.74 16 26 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.07 1.41 6.20 -51.93 -0.32 1.09 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.34 2.48 9.08 -39.29 -0.36 2.12 16 37 H 0.34 2.81 8.99 -39.29 -0.35 2.46 16 38 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -30.02 297.97 -8.66 -38.68 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.90 Total: 0.42 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -0.78 Total: -13.22 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.45 Total: -47.25 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.02 -8.66 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724024113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.361 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds