Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00255 * 2 1 4 4 C 1.50697 * 109.47051 * 66.04657 * 3 2 1 5 5 H 1.07996 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99815 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00386 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99772 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47378 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47138 * 119.99889 * 8 6 4 11 11 H 1.48504 * 109.46992 * 239.99563 * 8 6 4 12 12 C 1.46895 * 110.99963 * 236.04511 * 2 1 3 13 13 H 1.09001 * 109.47414 * 63.95606 * 12 2 1 14 14 C 1.53000 * 109.47320 * 183.95239 * 12 2 1 15 15 C 1.53002 * 109.47320 * 180.02562 * 14 12 2 16 16 C 1.53008 * 109.46995 * 299.99845 * 15 14 12 17 17 C 1.53005 * 109.46774 * 60.00238 * 16 15 14 18 18 H 1.08990 * 109.47398 * 60.00139 * 17 16 15 19 19 C 1.53000 * 109.46867 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.46769 * 294.99558 * 19 17 16 21 21 C 1.53002 * 109.47165 * 299.99658 * 17 16 15 22 22 H 1.09007 * 109.47449 * 183.95723 * 1 2 3 23 23 H 1.09002 * 109.47439 * 303.95314 * 1 2 3 24 24 H 1.08996 * 109.47543 * 63.95347 * 1 2 3 25 25 H 1.08995 * 109.47024 * 186.04776 * 3 2 1 26 26 H 1.09003 * 109.46861 * 306.04866 * 3 2 1 27 27 H 0.97002 * 120.00399 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47224 * 299.99820 * 14 12 2 29 29 H 1.09000 * 109.47090 * 60.00421 * 14 12 2 30 30 H 1.09000 * 109.47312 * 59.99788 * 15 14 12 31 31 H 1.08998 * 109.47141 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.47044 * 300.00107 * 16 15 14 33 33 H 1.09001 * 109.47171 * 180.02562 * 16 15 14 34 34 H 1.09002 * 109.47398 * 54.99853 * 19 17 16 35 35 H 1.09001 * 109.47194 * 175.00033 * 19 17 16 36 36 H 1.00908 * 110.99847 * 180.02562 * 20 19 17 37 37 H 1.00899 * 111.00283 * 303.95539 * 20 19 17 38 38 H 1.08994 * 109.47359 * 180.02562 * 21 17 16 39 39 H 1.09000 * 109.47312 * 300.00535 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0269 3.3494 1.5284 7 7 2.7121 4.0019 0.6149 8 14 1.5831 4.1867 3.1383 9 1 0.8158 3.2442 3.9915 10 1 2.8250 4.5943 3.8430 11 1 0.7552 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1375 13 1 1.7043 -0.2799 -2.0688 14 6 3.5216 -0.8264 -1.0492 15 6 4.0700 -1.6236 -2.2344 16 6 3.5006 -3.0435 -2.2011 17 6 1.9743 -2.9830 -2.2895 18 1 1.6833 -2.4966 -3.2204 19 6 1.4049 -4.4027 -2.2555 20 7 1.8352 -5.1316 -3.4562 21 6 1.4260 -2.1857 -1.1043 22 1 -0.3634 -1.0253 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4512 -0.9232 25 1 3.0797 1.3443 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 2.9867 4.9180 0.7769 28 1 3.9273 0.1850 -1.0734 29 1 3.8127 -1.3125 -0.1181 30 1 3.7789 -1.1372 -3.1654 31 1 5.1572 -1.6670 -2.1712 32 1 3.7917 -3.5299 -1.2701 33 1 3.8916 -3.6116 -3.0451 34 1 1.7688 -4.9190 -1.3671 35 1 0.3162 -4.3570 -2.2289 36 1 1.4714 -6.0728 -3.4576 37 1 1.5656 -4.6389 -4.2944 38 1 0.3387 -2.1431 -1.1670 39 1 1.7171 -2.6722 -0.1733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724024113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -40.621644 kcal Electronic energy + Delta-G solvation = -16370.597639 eV Core-core repulsion = 13924.985608 eV Total energy + Delta-G solvation = -2445.612031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37087 -37.50257 -35.16007 -34.42528 -31.66438 -30.49534 -29.02315 -26.61004 -25.37663 -23.65089 -22.52264 -21.03051 -20.61395 -18.56576 -17.18294 -16.64291 -16.06914 -15.86642 -15.54857 -15.47889 -15.25120 -14.76057 -14.42020 -14.08318 -13.76534 -13.26219 -13.22809 -12.86735 -12.80818 -12.55092 -12.43931 -12.17468 -12.12849 -11.93679 -11.81650 -11.37900 -11.28249 -11.00348 -10.79711 -10.56276 -9.50124 -8.99553 -8.20592 -6.30544 1.39867 1.40630 1.54437 2.39869 3.11467 3.24091 3.68526 3.77449 3.92364 4.16072 4.21544 4.36588 4.43994 4.54529 4.57017 4.63535 4.69589 4.71847 4.78641 4.84656 4.95267 5.01912 5.12630 5.16012 5.25501 5.31429 5.33728 5.38667 5.41485 5.50445 5.60852 5.68113 6.07914 6.29103 6.37613 6.67163 6.69522 6.86509 7.39063 8.90863 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052197 B = 0.005725 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.303978 B = 4889.678485 C = 5224.884469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.546 5.546 3 C 0.204 3.796 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.086 3.914 13 H 0.011 0.989 14 C -0.109 4.109 15 C -0.112 4.112 16 C -0.094 4.094 17 C -0.077 4.077 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.854 5.854 21 C -0.096 4.096 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.004 0.996 25 H 0.015 0.985 26 H -0.048 1.048 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.350 0.650 37 H 0.344 0.656 38 H 0.065 0.935 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -16.156 -6.564 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.270 5.270 3 C 0.078 3.922 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.022 4.022 13 H 0.029 0.971 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.131 4.131 17 C -0.097 4.097 18 H 0.081 0.919 19 C -0.058 4.058 20 N -0.384 5.384 21 C -0.134 4.134 22 H 0.102 0.898 23 H 0.074 0.926 24 H 0.023 0.977 25 H 0.033 0.967 26 H -0.030 1.030 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.470 -16.121 -5.880 17.223 hybrid contribution -1.325 1.538 -0.288 2.051 sum -2.796 -14.583 -6.168 16.079 Atomic orbital electron populations 1.22253 0.87952 1.01413 0.99347 1.62104 1.07850 1.15064 1.41947 1.19449 0.94436 0.83808 0.94500 1.21532 1.34695 0.97538 1.02380 0.91939 1.25932 0.95030 0.98048 1.00747 1.70101 1.39500 1.11854 1.36213 0.85321 0.78099 0.78172 0.78939 1.18675 1.20331 1.20392 1.21625 0.95364 0.94675 0.90563 0.97090 1.21569 0.94446 0.99293 0.99419 1.21527 1.00313 0.96320 0.96867 1.21399 0.94302 0.95059 1.02387 1.21087 0.96107 0.94988 0.97500 0.91874 1.21704 0.96754 0.93259 0.94055 1.58671 1.68320 1.06932 1.04513 1.21560 0.99782 0.92936 0.99109 0.89782 0.92609 0.97702 0.96712 1.03043 0.92725 0.94683 0.92122 0.92621 0.91186 0.92379 0.90263 0.91055 0.95116 0.83714 0.84314 0.91627 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 8.92 127.69 1.14 2.68 16 2 N -0.55 -24.61 4.62 -901.62 -4.17 -28.78 16 3 C 0.20 11.36 4.54 85.56 0.39 11.75 16 4 C -0.52 -30.61 8.46 25.60 0.22 -30.39 16 5 H 0.06 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 8 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.09 3.21 1.94 44.92 0.09 3.30 16 13 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 14 C -0.11 -3.98 5.00 30.60 0.15 -3.83 16 15 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 16 C -0.09 -2.22 5.09 30.60 0.16 -2.06 16 17 C -0.08 -1.77 2.33 -10.79 -0.03 -1.79 16 18 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 19 C 0.07 1.33 6.17 86.30 0.53 1.86 16 20 N -0.85 -13.05 9.08 -186.71 -1.70 -14.75 16 21 C -0.10 -2.70 4.12 30.60 0.13 -2.58 16 22 H 0.08 2.71 6.24 -2.38 -0.01 2.70 16 23 H 0.06 2.40 6.76 -2.39 -0.02 2.38 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.01 0.88 5.83 -2.39 -0.01 0.87 16 26 H -0.05 -2.94 8.12 -2.39 -0.02 -2.96 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.03 1.49 6.20 -2.39 -0.01 1.48 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.73 7.75 -2.39 -0.02 1.71 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.35 4.05 9.08 -89.69 -0.81 3.23 16 37 H 0.34 4.69 8.99 -89.69 -0.81 3.89 16 38 H 0.07 1.75 6.35 -2.39 -0.02 1.74 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.57 297.97 -0.73 -66.31 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -0.60 Total: 10.98 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.42 Total: -23.53 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.58 Total: -100.95 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.57 -0.73 -66.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724024113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.685 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds