Wall clock time and date at job start Mon Mar 30 2020 03:33:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46894 * 1
3 3 C 1.46903 * 111.00255 * 2 1
4 4 C 1.50697 * 109.47051 * 66.04657 * 3 2 1
5 5 H 1.07996 * 120.00186 * 359.97438 * 4 3 2
6 6 C 1.37874 * 119.99815 * 180.02562 * 4 3 2
7 7 N 1.31513 * 120.00386 * 359.97438 * 6 4 3
8 8 Si 1.86805 * 119.99772 * 180.02562 * 6 4 3
9 9 H 1.48499 * 109.47378 * 359.97438 * 8 6 4
10 10 H 1.48497 * 109.47138 * 119.99889 * 8 6 4
11 11 H 1.48504 * 109.46992 * 239.99563 * 8 6 4
12 12 C 1.46895 * 110.99963 * 236.04511 * 2 1 3
13 13 H 1.09001 * 109.47414 * 63.95606 * 12 2 1
14 14 C 1.53000 * 109.47320 * 183.95239 * 12 2 1
15 15 C 1.53002 * 109.47320 * 180.02562 * 14 12 2
16 16 C 1.53008 * 109.46995 * 299.99845 * 15 14 12
17 17 C 1.53005 * 109.46774 * 60.00238 * 16 15 14
18 18 H 1.08990 * 109.47398 * 60.00139 * 17 16 15
19 19 C 1.53000 * 109.46867 * 180.02562 * 17 16 15
20 20 N 1.46901 * 109.46769 * 294.99558 * 19 17 16
21 21 C 1.53002 * 109.47165 * 299.99658 * 17 16 15
22 22 H 1.09007 * 109.47449 * 183.95723 * 1 2 3
23 23 H 1.09002 * 109.47439 * 303.95314 * 1 2 3
24 24 H 1.08996 * 109.47543 * 63.95347 * 1 2 3
25 25 H 1.08995 * 109.47024 * 186.04776 * 3 2 1
26 26 H 1.09003 * 109.46861 * 306.04866 * 3 2 1
27 27 H 0.97002 * 120.00399 * 180.02562 * 7 6 4
28 28 H 1.08996 * 109.47224 * 299.99820 * 14 12 2
29 29 H 1.09000 * 109.47090 * 60.00421 * 14 12 2
30 30 H 1.09000 * 109.47312 * 59.99788 * 15 14 12
31 31 H 1.08998 * 109.47141 * 180.02562 * 15 14 12
32 32 H 1.09000 * 109.47044 * 300.00107 * 16 15 14
33 33 H 1.09001 * 109.47171 * 180.02562 * 16 15 14
34 34 H 1.09002 * 109.47398 * 54.99853 * 19 17 16
35 35 H 1.09001 * 109.47194 * 175.00033 * 19 17 16
36 36 H 1.00908 * 110.99847 * 180.02562 * 20 19 17
37 37 H 1.00899 * 111.00283 * 303.95539 * 20 19 17
38 38 H 1.08994 * 109.47359 * 180.02562 * 21 17 16
39 39 H 1.09000 * 109.47312 * 300.00535 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 1.2984
5 1 1.0740 1.5115 2.0484
6 6 2.0269 3.3494 1.5284
7 7 2.7121 4.0019 0.6149
8 14 1.5831 4.1867 3.1383
9 1 0.8158 3.2442 3.9915
10 1 2.8250 4.5943 3.8430
11 1 0.7552 5.3877 2.8597
12 6 1.9954 -0.7660 -1.1375
13 1 1.7043 -0.2799 -2.0688
14 6 3.5216 -0.8264 -1.0492
15 6 4.0700 -1.6236 -2.2344
16 6 3.5006 -3.0435 -2.2011
17 6 1.9743 -2.9830 -2.2895
18 1 1.6833 -2.4966 -3.2204
19 6 1.4049 -4.4027 -2.2555
20 7 1.8352 -5.1316 -3.4562
21 6 1.4260 -2.1857 -1.1043
22 1 -0.3634 -1.0253 0.0709
23 1 -0.3634 0.5740 0.8524
24 1 -0.3634 0.4512 -0.9232
25 1 3.0797 1.3443 -0.1083
26 1 1.5611 1.9274 -0.8309
27 1 2.9867 4.9180 0.7769
28 1 3.9273 0.1850 -1.0734
29 1 3.8127 -1.3125 -0.1181
30 1 3.7789 -1.1372 -3.1654
31 1 5.1572 -1.6670 -2.1712
32 1 3.7917 -3.5299 -1.2701
33 1 3.8916 -3.6116 -3.0451
34 1 1.7688 -4.9190 -1.3671
35 1 0.3162 -4.3570 -2.2289
36 1 1.4714 -6.0728 -3.4576
37 1 1.5656 -4.6389 -4.2944
38 1 0.3387 -2.1431 -1.1670
39 1 1.7171 -2.6722 -0.1733
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724024113.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:31
Heat of formation + Delta-G solvation = -40.621644 kcal
Electronic energy + Delta-G solvation = -16370.597639 eV
Core-core repulsion = 13924.985608 eV
Total energy + Delta-G solvation = -2445.612031 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.37087 -37.50257 -35.16007 -34.42528 -31.66438 -30.49534 -29.02315 -26.61004
-25.37663 -23.65089 -22.52264 -21.03051 -20.61395 -18.56576 -17.18294 -16.64291
-16.06914 -15.86642 -15.54857 -15.47889 -15.25120 -14.76057 -14.42020 -14.08318
-13.76534 -13.26219 -13.22809 -12.86735 -12.80818 -12.55092 -12.43931 -12.17468
-12.12849 -11.93679 -11.81650 -11.37900 -11.28249 -11.00348 -10.79711 -10.56276
-9.50124 -8.99553 -8.20592 -6.30544 1.39867 1.40630 1.54437 2.39869
3.11467 3.24091 3.68526 3.77449 3.92364 4.16072 4.21544 4.36588
4.43994 4.54529 4.57017 4.63535 4.69589 4.71847 4.78641 4.84656
4.95267 5.01912 5.12630 5.16012 5.25501 5.31429 5.33728 5.38667
5.41485 5.50445 5.60852 5.68113 6.07914 6.29103 6.37613 6.67163
6.69522 6.86509 7.39063 8.90863
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.052197 B = 0.005725 C = 0.005358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 536.303978 B = 4889.678485 C = 5224.884469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.546 5.546
3 C 0.204 3.796
4 C -0.523 4.523
5 H 0.062 0.938
6 C 0.000 4.000
7 N -0.936 5.936
8 Si 0.970 3.030
9 H -0.263 1.263
10 H -0.278 1.278
11 H -0.278 1.278
12 C 0.086 3.914
13 H 0.011 0.989
14 C -0.109 4.109
15 C -0.112 4.112
16 C -0.094 4.094
17 C -0.077 4.077
18 H 0.063 0.937
19 C 0.073 3.927
20 N -0.854 5.854
21 C -0.096 4.096
22 H 0.084 0.916
23 H 0.055 0.945
24 H 0.004 0.996
25 H 0.015 0.985
26 H -0.048 1.048
27 H 0.264 0.736
28 H 0.034 0.966
29 H 0.060 0.940
30 H 0.055 0.945
31 H 0.069 0.931
32 H 0.057 0.943
33 H 0.079 0.921
34 H 0.071 0.929
35 H 0.031 0.969
36 H 0.350 0.650
37 H 0.344 0.656
38 H 0.065 0.935
39 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.437 -16.156 -6.564 17.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 N -0.270 5.270
3 C 0.078 3.922
4 C -0.561 4.561
5 H 0.081 0.919
6 C -0.198 4.198
7 N -0.577 5.577
8 Si 0.795 3.205
9 H -0.187 1.187
10 H -0.203 1.203
11 H -0.204 1.204
12 C -0.022 4.022
13 H 0.029 0.971
14 C -0.147 4.147
15 C -0.150 4.150
16 C -0.131 4.131
17 C -0.097 4.097
18 H 0.081 0.919
19 C -0.058 4.058
20 N -0.384 5.384
21 C -0.134 4.134
22 H 0.102 0.898
23 H 0.074 0.926
24 H 0.023 0.977
25 H 0.033 0.967
26 H -0.030 1.030
27 H 0.073 0.927
28 H 0.053 0.947
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.088 0.912
32 H 0.076 0.924
33 H 0.097 0.903
34 H 0.089 0.911
35 H 0.049 0.951
36 H 0.163 0.837
37 H 0.157 0.843
38 H 0.084 0.916
39 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -1.470 -16.121 -5.880 17.223
hybrid contribution -1.325 1.538 -0.288 2.051
sum -2.796 -14.583 -6.168 16.079
Atomic orbital electron populations
1.22253 0.87952 1.01413 0.99347 1.62104 1.07850 1.15064 1.41947
1.19449 0.94436 0.83808 0.94500 1.21532 1.34695 0.97538 1.02380
0.91939 1.25932 0.95030 0.98048 1.00747 1.70101 1.39500 1.11854
1.36213 0.85321 0.78099 0.78172 0.78939 1.18675 1.20331 1.20392
1.21625 0.95364 0.94675 0.90563 0.97090 1.21569 0.94446 0.99293
0.99419 1.21527 1.00313 0.96320 0.96867 1.21399 0.94302 0.95059
1.02387 1.21087 0.96107 0.94988 0.97500 0.91874 1.21704 0.96754
0.93259 0.94055 1.58671 1.68320 1.06932 1.04513 1.21560 0.99782
0.92936 0.99109 0.89782 0.92609 0.97702 0.96712 1.03043 0.92725
0.94683 0.92122 0.92621 0.91186 0.92379 0.90263 0.91055 0.95116
0.83714 0.84314 0.91627 0.91420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.54 8.92 127.69 1.14 2.68 16
2 N -0.55 -24.61 4.62 -901.62 -4.17 -28.78 16
3 C 0.20 11.36 4.54 85.56 0.39 11.75 16
4 C -0.52 -30.61 8.46 25.60 0.22 -30.39 16
5 H 0.06 3.58 7.12 -2.91 -0.02 3.56 16
6 C 0.00 0.01 5.46 84.65 0.46 0.47 16
7 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16
8 Si 0.97 45.17 29.54 68.60 2.03 47.20 16
9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16
10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16
11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
12 C 0.09 3.21 1.94 44.92 0.09 3.30 16
13 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
14 C -0.11 -3.98 5.00 30.60 0.15 -3.83 16
15 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16
16 C -0.09 -2.22 5.09 30.60 0.16 -2.06 16
17 C -0.08 -1.77 2.33 -10.79 -0.03 -1.79 16
18 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
19 C 0.07 1.33 6.17 86.30 0.53 1.86 16
20 N -0.85 -13.05 9.08 -186.71 -1.70 -14.75 16
21 C -0.10 -2.70 4.12 30.60 0.13 -2.58 16
22 H 0.08 2.71 6.24 -2.38 -0.01 2.70 16
23 H 0.06 2.40 6.76 -2.39 -0.02 2.38 16
24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16
25 H 0.01 0.88 5.83 -2.39 -0.01 0.87 16
26 H -0.05 -2.94 8.12 -2.39 -0.02 -2.96 16
27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16
28 H 0.03 1.49 6.20 -2.39 -0.01 1.48 16
29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.08 1.73 7.75 -2.39 -0.02 1.71 16
34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16
36 H 0.35 4.05 9.08 -89.69 -0.81 3.23 16
37 H 0.34 4.69 8.99 -89.69 -0.81 3.89 16
38 H 0.07 1.75 6.35 -2.39 -0.02 1.74 16
39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
Total: -1.00 -65.57 297.97 -0.73 -66.31
By element:
Atomic # 1 Polarization: 11.58 SS G_CDS: -0.60 Total: 10.98 kcal
Atomic # 6 Polarization: -26.95 SS G_CDS: 3.42 Total: -23.53 kcal
Atomic # 7 Polarization: -95.38 SS G_CDS: -5.58 Total: -100.95 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal
Total: -65.57 -0.73 -66.31 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724024113.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.685 kcal
(2) G-P(sol) polarization free energy of solvation -65.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.889 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.622 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds