Wall clock time and date at job start Mon Mar 30 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00099 * 2 1 4 4 C 1.50704 * 109.46944 * 66.04524 * 3 2 1 5 5 H 1.07998 * 119.99766 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99794 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99776 * 0.02562 * 6 4 3 8 8 Si 1.86791 * 119.99861 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47086 * 60.00296 * 8 6 4 10 10 H 1.48501 * 109.47041 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47585 * 300.00282 * 8 6 4 12 12 C 1.46898 * 111.00102 * 236.04326 * 2 1 3 13 13 H 1.09004 * 109.47163 * 178.95051 * 12 2 1 14 14 C 1.53004 * 109.46860 * 58.95653 * 12 2 1 15 15 C 1.52997 * 109.47024 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47504 * 59.99687 * 15 14 12 17 17 C 1.53004 * 109.47236 * 300.00184 * 16 15 14 18 18 H 1.09004 * 109.46741 * 300.00111 * 17 16 15 19 19 C 1.52997 * 109.47236 * 180.02562 * 17 16 15 20 20 N 1.46899 * 109.47254 * 64.99771 * 19 17 16 21 21 C 1.52997 * 109.47024 * 59.99522 * 17 16 15 22 22 H 1.09010 * 109.47414 * 183.95541 * 1 2 3 23 23 H 1.09001 * 109.47201 * 303.95267 * 1 2 3 24 24 H 1.08996 * 109.47416 * 63.95378 * 1 2 3 25 25 H 1.08993 * 109.46900 * 186.04551 * 3 2 1 26 26 H 1.08998 * 109.46908 * 306.04617 * 3 2 1 27 27 H 0.97000 * 119.99586 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46741 * 299.99657 * 14 12 2 29 29 H 1.09000 * 109.47403 * 59.99792 * 14 12 2 30 30 H 1.09002 * 109.47016 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.47325 * 299.99623 * 15 14 12 32 32 H 1.09001 * 109.47630 * 180.02562 * 16 15 14 33 33 H 1.09004 * 109.47346 * 59.99924 * 16 15 14 34 34 H 1.09002 * 109.47153 * 304.99767 * 19 17 16 35 35 H 1.09001 * 109.46832 * 184.99958 * 19 17 16 36 36 H 1.00900 * 111.00464 * 179.97438 * 20 19 17 37 37 H 1.00902 * 111.00582 * 303.95797 * 20 19 17 38 38 H 1.09004 * 109.46881 * 60.00674 * 21 17 16 39 39 H 1.09002 * 109.47016 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3492 1.5289 7 7 2.7128 4.0015 0.6154 8 14 1.5826 4.1869 3.1380 9 1 2.1733 3.4293 4.2704 10 1 2.1149 5.5732 3.1381 11 1 0.1053 4.2244 3.2847 12 6 1.9954 -0.7660 -1.1375 13 1 3.0849 -0.7342 -1.1240 14 6 1.4837 -0.1557 -2.4439 15 6 2.0314 -0.9539 -3.6287 16 6 1.5618 -2.4064 -3.5260 17 6 2.0735 -3.0167 -2.2196 18 1 3.1630 -2.9852 -2.2062 19 6 1.6045 -4.4694 -2.1172 20 7 2.2270 -5.2615 -3.1863 21 6 1.5258 -2.2185 -1.0348 22 1 -0.3634 -1.0253 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3634 0.4512 -0.9232 25 1 3.0796 1.3444 -0.1082 26 1 1.5611 1.9273 -0.8309 27 1 2.9880 4.9174 0.7777 28 1 0.3942 -0.1875 -2.4575 29 1 1.8179 0.8792 -2.5169 30 1 1.6665 -0.5193 -4.5593 31 1 3.1209 -0.9225 -3.6153 32 1 1.9524 -2.9751 -4.3698 33 1 0.4723 -2.4378 -3.5393 34 1 0.5200 -4.5091 -2.2199 35 1 1.8928 -4.8768 -1.1481 36 1 1.9331 -6.2256 -3.1400 37 1 2.0276 -4.8656 -4.0927 38 1 0.4363 -2.2500 -1.0482 39 1 1.8907 -2.6530 -0.1042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724024117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:37 Heat of formation + Delta-G solvation = -40.709439 kcal Electronic energy + Delta-G solvation = -16419.557772 eV Core-core repulsion = 13973.941934 eV Total energy + Delta-G solvation = -2445.615838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56415 -37.56617 -35.14796 -34.27258 -31.64692 -30.38574 -28.88206 -26.74410 -25.71249 -23.60565 -22.89773 -20.91241 -20.29268 -18.53096 -17.08898 -16.75516 -16.26750 -15.94770 -15.73633 -15.41950 -15.05983 -14.78368 -14.25624 -14.01664 -13.97964 -13.46860 -13.09175 -12.86127 -12.63800 -12.59776 -12.47114 -12.35794 -12.10319 -11.96308 -11.76776 -11.37573 -11.28706 -11.07648 -10.93644 -10.59658 -9.53392 -8.88489 -8.20019 -6.30697 1.40090 1.43763 1.51668 2.40172 3.11755 3.29712 3.67276 3.82823 3.86863 4.04021 4.18933 4.33625 4.37244 4.53063 4.59437 4.60535 4.66082 4.68840 4.76607 4.85134 4.93242 5.06562 5.08973 5.16371 5.18147 5.24707 5.28725 5.32901 5.39377 5.51260 5.58349 5.66023 6.07224 6.30243 6.38661 6.67056 6.70263 6.86399 7.39110 8.90697 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.053593 B = 0.005639 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.334883 B = 4964.017434 C = 5210.928823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.546 5.546 3 C 0.211 3.789 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.084 3.916 13 H 0.052 0.948 14 C -0.146 4.146 15 C -0.109 4.109 16 C -0.105 4.105 17 C -0.079 4.079 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.859 5.859 21 C -0.092 4.092 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.014 0.986 25 H -0.006 1.006 26 H -0.034 1.034 27 H 0.264 0.736 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.350 0.650 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 -15.476 -8.114 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.269 5.269 3 C 0.085 3.915 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.025 4.025 13 H 0.071 0.929 14 C -0.185 4.185 15 C -0.147 4.147 16 C -0.142 4.142 17 C -0.099 4.099 18 H 0.083 0.917 19 C -0.058 4.058 20 N -0.391 5.391 21 C -0.130 4.130 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.012 0.988 26 H -0.016 1.016 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.699 -15.349 -7.349 17.415 hybrid contribution -1.059 1.369 -0.298 1.756 sum -4.758 -13.980 -7.648 16.630 Atomic orbital electron populations 1.22253 0.87956 1.01245 0.99600 1.62240 1.08149 1.15135 1.41335 1.19302 0.93069 0.84222 0.94898 1.21496 1.34922 0.97584 1.02494 0.91935 1.25936 0.94971 0.98039 1.00759 1.70093 1.39355 1.11892 1.36282 0.85425 0.78868 0.77149 0.79108 1.19339 1.20785 1.19128 1.21727 0.98241 0.94430 0.88069 0.92934 1.22127 1.00895 0.98622 0.96856 1.21426 1.00385 0.95914 0.96945 1.21545 1.00696 0.94599 0.97384 1.21088 1.00392 0.93917 0.94469 0.91732 1.21695 0.96088 0.92399 0.95586 1.58697 1.66579 1.06731 1.07068 1.21492 1.00804 0.92390 0.98349 0.90123 0.92930 0.96727 0.98822 1.01602 0.92719 0.91836 0.95162 0.91258 0.92607 0.90179 0.91703 0.94712 0.91360 0.83711 0.84058 0.91323 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 8.63 127.69 1.10 2.58 16 2 N -0.55 -24.43 4.74 -901.62 -4.27 -28.71 16 3 C 0.21 11.72 4.16 85.56 0.36 12.08 16 4 C -0.53 -30.81 8.46 25.60 0.22 -30.59 16 5 H 0.06 3.57 7.12 -2.91 -0.02 3.55 16 6 C 0.00 0.04 5.46 84.66 0.46 0.51 16 7 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 8 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.08 3.10 2.23 44.92 0.10 3.20 16 13 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 14 C -0.15 -4.99 4.51 30.59 0.14 -4.85 16 15 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 16 C -0.10 -2.17 4.98 30.59 0.15 -2.01 16 17 C -0.08 -1.81 2.40 -10.79 -0.03 -1.83 16 18 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 19 C 0.07 1.35 6.25 86.30 0.54 1.89 16 20 N -0.86 -13.72 9.62 -186.72 -1.80 -15.52 16 21 C -0.09 -2.59 4.28 30.59 0.13 -2.46 16 22 H 0.08 2.58 6.33 -2.38 -0.02 2.57 16 23 H 0.05 2.24 6.76 -2.39 -0.02 2.23 16 24 H 0.01 0.56 6.28 -2.39 -0.02 0.55 16 25 H -0.01 -0.39 8.00 -2.39 -0.02 -0.41 16 26 H -0.03 -2.01 6.94 -2.39 -0.02 -2.02 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.06 2.10 6.39 -2.39 -0.02 2.08 16 29 H 0.03 1.23 6.75 -2.39 -0.02 1.22 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.08 1.35 6.68 -2.39 -0.02 1.33 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.35 4.25 9.08 -89.69 -0.81 3.43 16 37 H 0.35 4.73 7.25 -89.69 -0.65 4.08 16 38 H 0.07 1.81 6.42 -2.39 -0.02 1.80 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -65.71 293.09 -0.84 -66.55 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.43 Total: 12.12 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 3.35 Total: -24.15 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -5.79 Total: -101.70 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.71 -0.84 -66.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724024117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.841 kcal (2) G-P(sol) polarization free energy of solvation -65.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds