Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.50169 * 1 3 3 C 1.49443 * 106.59050 * 2 1 4 4 C 1.51189 * 114.17989 * 305.92704 * 3 2 1 5 5 C 1.53158 * 110.71074 * 260.70003 * 4 3 2 6 6 C 1.52931 * 109.39555 * 148.46174 * 5 4 3 7 7 C 1.52915 * 109.72650 * 229.89955 * 6 5 4 8 8 N 1.47838 * 109.09905 * 101.95401 * 7 6 5 9 9 C 1.37112 * 121.87319 * 90.53615 * 8 7 6 10 10 H 1.08010 * 119.99996 * 325.35437 * 9 8 7 11 11 C 1.38808 * 120.00447 * 145.35006 * 9 8 7 12 12 N 1.31622 * 120.00132 * 333.00526 * 11 9 8 13 13 Si 1.86803 * 119.99885 * 152.99699 * 11 9 8 14 14 H 1.48499 * 109.47193 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46992 * 240.00374 * 13 11 9 16 16 H 1.48501 * 109.46631 * 120.00554 * 13 11 9 17 17 C 1.47823 * 116.68936 * 270.15975 * 8 7 6 18 18 C 1.54016 * 108.69606 * 83.79158 * 17 8 7 19 19 C 1.49355 * 107.42806 * 246.32845 * 2 1 3 20 20 H 1.09003 * 109.46875 * 177.31616 * 1 2 3 21 21 H 1.08993 * 109.47311 * 297.32311 * 1 2 3 22 22 H 1.08999 * 109.46923 * 57.32129 * 1 2 3 23 23 H 1.09704 * 107.15272 * 68.05617 * 3 2 1 24 24 H 1.09517 * 107.07291 * 183.76449 * 3 2 1 25 25 H 1.07827 * 114.86519 * 25.93760 * 4 3 2 26 26 H 1.10919 * 108.00260 * 144.00784 * 4 3 2 27 27 H 1.09347 * 109.12667 * 267.62750 * 5 4 3 28 28 H 1.08644 * 110.21304 * 27.56958 * 5 4 3 29 29 H 1.08980 * 109.63192 * 350.32924 * 6 5 4 30 30 H 1.09120 * 109.35471 * 110.08196 * 6 5 4 31 31 H 1.08915 * 109.92557 * 341.60788 * 7 6 5 32 32 H 1.09236 * 109.69681 * 221.38795 * 7 6 5 33 33 H 0.97001 * 119.99804 * 354.46995 * 12 11 9 34 34 H 1.08756 * 110.01002 * 203.42555 * 17 8 7 35 35 H 1.08781 * 109.79595 * 324.63325 * 17 8 7 36 36 H 1.08528 * 107.49317 * 355.20127 * 18 17 8 37 37 H 1.09264 * 107.36141 * 113.38599 * 18 17 8 38 38 H 1.09912 * 106.64613 * 261.67764 * 19 2 1 39 39 H 1.08918 * 108.04282 * 145.83907 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.5017 0.0000 0.0000 3 6 1.9284 1.4322 0.0000 4 6 1.3296 2.2568 -1.1169 5 6 2.3259 2.4118 -2.2697 6 6 1.5625 2.5049 -3.5916 7 6 2.1559 1.5211 -4.6007 8 7 1.2841 0.3301 -4.6851 9 6 0.2541 0.2492 -5.5865 10 1 -0.3062 1.1351 -5.8472 11 6 -0.0686 -0.9710 -6.1642 12 7 0.8538 -1.9005 -6.2975 13 14 -1.8120 -1.2941 -6.7523 14 1 -2.6523 -0.0981 -6.4903 15 1 -2.3713 -2.4616 -6.0248 16 1 -1.7978 -1.5791 -8.2096 17 6 1.5820 -0.7782 -3.7534 18 6 0.9078 -0.4808 -2.4009 19 6 1.9490 -0.5721 -1.3051 20 1 -0.3633 -1.0266 -0.0481 21 1 -0.3633 0.4717 0.9129 22 1 -0.3633 0.5549 -0.8650 23 1 1.6454 1.8541 0.9723 24 1 3.0214 1.4421 -0.0687 25 1 0.3862 1.8942 -1.4925 26 1 1.1317 3.2747 -0.7233 27 1 2.9009 3.3307 -2.1253 28 1 3.0056 1.5647 -2.2949 29 1 0.5117 2.2688 -3.4250 30 1 1.6452 3.5189 -3.9863 31 1 3.1550 1.2234 -4.2855 32 1 2.2130 1.9923 -5.5845 33 1 1.7755 -1.7057 -6.0666 34 1 1.1935 -1.7130 -4.1507 35 1 2.6567 -0.8552 -3.6041 36 1 0.4640 0.5073 -2.4679 37 1 0.1262 -1.2302 -2.2545 38 1 2.1887 -1.6287 -1.1201 39 1 2.8677 -0.0657 -1.5983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885790905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 29.521332 kcal Electronic energy + Delta-G solvation = -17354.604926 eV Core-core repulsion = 14912.034522 eV Total energy + Delta-G solvation = -2442.570404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.92194 -35.91019 -34.12052 -31.84768 -30.05830 -28.84805 -26.66870 -25.13335 -23.45217 -22.70388 -20.56762 -19.84569 -19.54540 -17.29441 -16.12532 -15.15278 -14.50253 -14.21434 -13.92782 -13.74318 -13.54898 -13.32694 -12.77387 -12.41738 -11.93826 -11.65571 -11.52293 -11.32720 -11.07132 -10.96600 -10.72322 -10.66820 -10.57322 -10.34752 -10.15938 -10.06704 -9.74577 -9.47232 -9.34897 -8.36342 -8.30460 -6.78270 -6.03507 -3.30337 3.50098 3.52303 3.66184 4.41927 4.58055 4.90783 5.07280 5.17658 5.28498 5.43102 5.48654 5.53743 5.63902 5.75982 5.79101 5.82144 5.92770 5.98665 6.08494 6.13236 6.22730 6.35344 6.38960 6.45111 6.51426 6.56030 6.63553 6.69991 6.84079 7.01749 7.06588 7.11585 7.14620 7.37256 8.08249 8.58838 9.11374 9.83373 10.36325 11.18061 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.009236 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.252899 B = 3030.934847 C = 3364.592450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.485 5.485 3 C 0.026 3.974 4 C -0.148 4.148 5 C -0.115 4.115 6 C -0.139 4.139 7 C 0.139 3.861 8 N -0.596 5.596 9 C -0.344 4.344 10 H 0.051 0.949 11 C -0.020 4.020 12 N -0.907 5.907 13 Si 1.065 2.935 14 H -0.292 1.292 15 H -0.290 1.290 16 H -0.294 1.294 17 C 0.138 3.862 18 C -0.167 4.167 19 C 0.027 3.973 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.269 0.731 34 H 0.076 0.924 35 H 0.025 0.975 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 6.103 10.214 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 N -0.206 5.206 3 C -0.103 4.103 4 C -0.187 4.187 5 C -0.153 4.153 6 C -0.179 4.179 7 C 0.013 3.987 8 N -0.319 5.319 9 C -0.473 4.473 10 H 0.068 0.932 11 C -0.224 4.224 12 N -0.546 5.546 13 Si 0.895 3.105 14 H -0.218 1.218 15 H -0.216 1.216 16 H -0.221 1.221 17 C 0.011 3.989 18 C -0.208 4.208 19 C -0.101 4.101 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.613 4.632 10.033 11.068 hybrid contribution 0.655 1.740 -0.056 1.860 sum 1.268 6.372 9.977 11.906 Atomic orbital electron populations 1.23370 0.89724 1.02215 1.01083 1.68888 1.09044 1.12484 1.30176 1.22779 1.00354 0.89603 0.97563 1.22062 1.00094 0.99967 0.96568 1.21908 0.97736 1.00859 0.94776 1.22413 1.00837 0.99070 0.95596 1.21320 0.92064 0.89100 0.96203 1.44690 1.34153 1.14697 1.38339 1.19820 1.08851 0.97399 1.21187 0.93170 1.25866 1.05142 0.94831 0.96517 1.70716 1.02344 1.37630 1.43918 0.83548 0.75442 0.75354 0.76187 1.21798 1.21650 1.22116 1.21390 0.95441 0.94153 0.87961 1.22725 0.98545 1.02905 0.96593 1.22861 0.98580 1.00121 0.88515 0.91616 0.92416 0.92746 0.91906 0.91258 0.90028 0.93275 0.93340 0.91714 0.91201 0.93871 0.94773 0.93987 0.92021 0.90632 0.95663 0.89658 0.93150 0.92057 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.22 8.20 61.90 0.51 0.29 16 2 N -0.48 -7.26 6.27 -236.59 -1.48 -8.75 16 3 C 0.03 0.35 5.11 -3.32 -0.02 0.33 16 4 C -0.15 -2.07 4.27 -27.56 -0.12 -2.19 16 5 C -0.12 -1.72 4.79 -26.68 -0.13 -1.85 16 6 C -0.14 -2.45 5.28 -26.81 -0.14 -2.60 16 7 C 0.14 2.89 5.96 -3.35 -0.02 2.87 16 8 N -0.60 -14.46 2.01 -170.59 -0.34 -14.80 16 9 C -0.34 -9.43 9.60 -14.98 -0.14 -9.58 16 10 H 0.05 1.42 7.96 -52.48 -0.42 1.00 16 11 C -0.02 -0.57 4.83 -17.43 -0.08 -0.66 16 12 N -0.91 -26.89 12.27 55.49 0.68 -26.21 16 13 Si 1.06 25.28 30.00 -169.99 -5.10 20.18 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.14 3.11 5.16 -2.79 -0.01 3.09 16 18 C -0.17 -3.18 3.59 -26.99 -0.10 -3.28 16 19 C 0.03 0.45 4.66 -3.24 -0.02 0.43 16 20 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.83 4.20 -51.93 -0.22 0.61 16 23 H 0.06 0.77 8.20 -51.53 -0.42 0.35 16 24 H 0.07 0.91 7.41 -51.64 -0.38 0.53 16 25 H 0.08 1.28 3.50 -52.58 -0.18 1.09 16 26 H 0.05 0.62 8.29 -50.83 -0.42 0.19 16 27 H 0.05 0.65 8.17 -51.73 -0.42 0.22 16 28 H 0.06 1.02 4.68 -52.13 -0.24 0.78 16 29 H 0.07 1.38 6.04 -51.94 -0.31 1.06 16 30 H 0.04 0.70 8.15 -51.86 -0.42 0.28 16 31 H 0.03 0.67 6.94 -51.98 -0.36 0.31 16 32 H 0.04 0.91 8.10 -51.80 -0.42 0.49 16 33 H 0.27 8.06 7.24 -40.82 -0.30 7.76 16 34 H 0.08 1.97 5.73 -52.07 -0.30 1.67 16 35 H 0.03 0.54 7.06 -52.05 -0.37 0.17 16 36 H 0.09 1.67 2.53 -52.19 -0.13 1.54 16 37 H 0.05 1.00 7.71 -51.78 -0.40 0.60 16 38 H 0.06 1.01 8.22 -51.41 -0.42 0.59 16 39 H 0.06 1.07 5.06 -51.98 -0.26 0.80 16 LS Contribution 274.58 15.07 4.14 4.14 Total: -1.00 -28.47 274.58 -8.42 -36.89 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.04 Total: 1.68 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.27 Total: -13.13 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.15 Total: -49.76 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.18 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.47 -8.42 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885790905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.408 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds